assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000013785.1_ASM1378v1	NC_009434	Pseudomonas stutzeri A1501, complete sequence	1	1028291-1028389	1	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,RT,DinG,cas5,cas8c,cas7,cas4,cas1,cas2	Orphan	CGAGCGGCTGCTGGTGGTGACCCG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,RT,DinG,cas5,cas8c,cas7,cas4,cas1,cas2	NA,NA	NA|228aa|up_9|NC_009434.1_1017811_1018495_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|423aa|up_8|NC_009434.1_1018484_1019753_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|226aa|up_7|NC_009434.1_1019834_1020512_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|240aa|up_6|NC_009434.1_1020514_1021234_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|136aa|up_5|NC_009434.1_1021223_1021631_+	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase	NA|718aa|up_4|NC_009434.1_1021659_1023813_+	cd16015, LTA_synthase, Lipoteichoic acid synthase like	NA|363aa|up_3|NC_009434.1_1023912_1025001_-	PRK05031, PRK05031, tRNA (uracil-5-)-methyltransferase; Validated	NA|432aa|up_2|NC_009434.1_1025092_1026388_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|188aa|up_1|NC_009434.1_1026518_1027082_+	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|325aa|up_0|NC_009434.1_1027150_1028125_+	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|171aa|down_0|NC_009434.1_1028847_1029360_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|329aa|down_1|NC_009434.1_1029356_1030343_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|734aa|down_2|NC_009434.1_1030339_1032541_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|413aa|down_3|NC_009434.1_1032951_1034190_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|360aa|down_4|NC_009434.1_1034333_1035413_+	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family	NA|349aa|down_5|NC_009434.1_1035418_1036465_+	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family	NA|135aa|down_6|NC_009434.1_1036500_1036905_-	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|126aa|down_7|NC_009434.1_1036961_1037339_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|376aa|down_8|NC_009434.1_1037335_1038463_-	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|259aa|down_9|NC_009434.1_1038559_1039336_+	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin
GCF_000013785.1_ASM1378v1	NC_009434	Pseudomonas stutzeri A1501, complete sequence	2	1445797-1445956	2	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,RT,DinG,cas5,cas8c,cas7,cas4,cas1,cas2	Orphan	CTCGCGGTGATGCAGGCCGGTAGGCCTGCCAAAGACTGAAAAGCATCGCCCCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,RT,DinG,cas5,cas8c,cas7,cas4,cas1,cas2	NA|166aa|up_3|NC_009434.1_1443617_1444115_+,NA|125aa|up_2|NC_009434.1_1444114_1444489_+,NA|130aa|up_0|NC_009434.1_1445260_1445650_+,NA	NA|459aa|up_9|NC_009434.1_1440310_1441687_+	PRK14476, PRK14476, nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional	NA|160aa|up_8|NC_009434.1_1441690_1442170_+	cd00853, NifX, NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB,  and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme	NA|160aa|up_7|NC_009434.1_1442198_1442678_+	pfam03270, DUF269, Protein of unknown function, DUF269	NA|70aa|up_6|NC_009434.1_1442692_1442902_+	pfam05082, Rop-like, Rop-like	NA|99aa|up_5|NC_009434.1_1442984_1443281_+	TIGR02936, fdxN_nitrog, ferredoxin III, nif-specific	NA|107aa|up_4|NC_009434.1_1443293_1443614_+	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)	NA|166aa|up_3|NC_009434.1_1443617_1444115_+	NA	NA|125aa|up_2|NC_009434.1_1444114_1444489_+	NA	NA|250aa|up_1|NC_009434.1_1444481_1445231_+	pfam04016, DUF364, Putative heavy-metal chelation	NA|130aa|up_0|NC_009434.1_1445260_1445650_+	NA	NA|73aa|down_0|NC_009434.1_1446146_1446365_-	pfam07862, Nif11, Nif11 domain	NA|366aa|down_1|NC_009434.1_1446527_1447625_-	TIGR02142, Molybdenum_import_ATP-binding_protein_ModC, molybdenum ABC transporter, ATP-binding protein	NA|227aa|down_2|NC_009434.1_1447637_1448318_-	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]	NA|251aa|down_3|NC_009434.1_1448324_1449077_-	cd13539, PBP2_AvModA, Substrate binding domain of ModA/WtpA from Azotobacter vinelandii and its closest homologs;the type 2 periplasmic binding protein fold	NA|269aa|down_4|NC_009434.1_1449088_1449895_-	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional	NA|108aa|down_5|NC_009434.1_1450285_1450609_+	TIGR00049, Uncharacterized_protein_in_nifU_5'region, Iron-sulfur cluster assembly accessory protein	NA|317aa|down_6|NC_009434.1_1450670_1451621_+	TIGR02000, Nitrogen_fixation_protein_NifU, Fe-S cluster assembly protein NifU	NA|403aa|down_7|NC_009434.1_1451622_1452831_+	TIGR03402, Cysteine_desulfurase_NifS, cysteine desulfurase NifS	NA|382aa|down_8|NC_009434.1_1452871_1454017_+	TIGR02660, Homocitrate_synthase, homocitrate synthase NifV	NA|248aa|down_9|NC_009434.1_1454013_1454757_+	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase
GCF_000013785.1_ASM1378v1	NC_009434	Pseudomonas stutzeri A1501, complete sequence	3	4056654-4059477	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,csa3,WYL,DEDDh,RT,DinG,cas5,cas8c,cas7,cas4,cas1,cas2	Type I-U, Type I-U?,Type I-C	GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC,GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC,GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	42,42,42	42	TypeI-U,TypeI-U?,TypeI-C	cas3,csa3,WYL,DEDDh,RT,DinG,cas5,cas8c,cas7,cas4,cas1,cas2	NA,NA|204aa|down_6|NC_009434.1_4067571_4068183_+	NA|681aa|up_9|NC_009434.1_4042676_4044719_+	cd10280, PQQ_mGDH, Membrane-bound PQQ-dependent glucose dehydrogenase	NA|491aa|up_8|NC_009434.1_4044719_4046192_-	PRK08292, PRK08292, AMP nucleosidase; Provisional	NA|470aa|up_7|NC_009434.1_4046206_4047616_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	cas3|746aa|up_6|NC_009434.1_4048800_4051038_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|225aa|up_5|NC_009434.1_4051152_4051827_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|596aa|up_4|NC_009434.1_4051823_4053611_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|290aa|up_3|NC_009434.1_4053607_4054477_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|211aa|up_2|NC_009434.1_4054496_4055129_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|347aa|up_1|NC_009434.1_4055132_4056173_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NC_009434.1_4056182_4056473_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|280aa|down_0|NC_009434.1_4059862_4060702_+	pfam00520, Ion_trans, Ion transport protein	NA|549aa|down_1|NC_009434.1_4060744_4062391_-	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional	NA|667aa|down_2|NC_009434.1_4062539_4064540_-	pfam07695, 7TMR-DISM_7TM, 7TM diverse intracellular signalling	NA|265aa|down_3|NC_009434.1_4064775_4065570_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|214aa|down_4|NC_009434.1_4065584_4066226_+	PRK00043, thiE, thiamine phosphate synthase	NA|428aa|down_5|NC_009434.1_4066279_4067563_+	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|204aa|down_6|NC_009434.1_4067571_4068183_+	NA	NA|179aa|down_7|NC_009434.1_4068300_4068837_+	sd00010, SLR, Sel1-like repeat	NA|438aa|down_8|NC_009434.1_4068940_4070254_+	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|336aa|down_9|NC_009434.1_4070385_4071393_+	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
