assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000013645.1_ASM1364v1	NC_007951	Paraburkholderia xenovorans LB400 chromosome 1, complete sequence	1	1087633-1087740	1	CRISPRCasFinder	no		cas3,WYL,RT,DinG,DEDDh,csa3	Orphan	TGGGGGGCGCTTCTGGAACGCCGGGCCGCCC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,DinG,DEDDh,csa3	NA,NA	NA|129aa|up_9|NC_007951.1_1072300_1072687_-	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional	NA|278aa|up_8|NC_007951.1_1072738_1073572_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|292aa|up_7|NC_007951.1_1073759_1074635_-	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication,    recombination, and repair]	NA|62aa|up_6|NC_007951.1_1074639_1074825_-	pfam11943, DUF3460, Protein of unknown function (DUF3460)	NA|612aa|up_5|NC_007951.1_1075221_1077057_+	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|1436aa|up_4|NC_007951.1_1077085_1081393_+	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|711aa|up_3|NC_007951.1_1081528_1083661_-	PRK00133, metG, methionyl-tRNA synthetase; Reviewed	NA|218aa|up_2|NC_007951.1_1084024_1084678_-	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]	NA|363aa|up_1|NC_007951.1_1085026_1086115_+	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC	NA|402aa|up_0|NC_007951.1_1086176_1087382_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|178aa|down_0|NC_007951.1_1087900_1088434_+	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|190aa|down_1|NC_007951.1_1088783_1089353_+	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|762aa|down_2|NC_007951.1_1089440_1091726_+	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|244aa|down_3|NC_007951.1_1091728_1092460_+	pfam07007, LprI, Lysozyme inhibitor LprI	NA|309aa|down_4|NC_007951.1_1092496_1093423_-	COG3781, COG3781, Predicted membrane protein [Function unknown]	NA|281aa|down_5|NC_007951.1_1093503_1094346_-	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein	NA|303aa|down_6|NC_007951.1_1094496_1095405_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|276aa|down_7|NC_007951.1_1095474_1096302_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|418aa|down_8|NC_007951.1_1096340_1097594_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|349aa|down_9|NC_007951.1_1097631_1098678_-	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold
GCF_000013645.1_ASM1364v1	NC_007951	Paraburkholderia xenovorans LB400 chromosome 1, complete sequence	2	2394432-2394609	2	CRISPRCasFinder	no		cas3,WYL,RT,DinG,DEDDh,csa3	Orphan	CTTCGTACCCGAGCGGGTACGAAAT	25	0	0	NA	NA	NA	3	3	Orphan	cas3,WYL,RT,DinG,DEDDh,csa3	NA|114aa|up_7|NC_007951.1_2381148_2381490_-,NA	NA|91aa|up_9|NC_007951.1_2378480_2378753_+	cd13831, HU, histone-like DNA-binding protein HU	NA|646aa|up_8|NC_007951.1_2379122_2381060_+	PRK10788, PRK10788, periplasmic folding chaperone; Provisional	NA|114aa|up_7|NC_007951.1_2381148_2381490_-	NA	NA|225aa|up_6|NC_007951.1_2381608_2382283_-	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|229aa|up_5|NC_007951.1_2382311_2382998_+	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|541aa|up_4|NC_007951.1_2383169_2384792_-	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|534aa|up_3|NC_007951.1_2385026_2386628_-	PRK10565, PRK10565, putative carbohydrate kinase; Provisional	NA|433aa|up_2|NC_007951.1_2386800_2388099_-	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|514aa|up_1|NC_007951.1_2388365_2389907_-	cd11007, M35_like_1, Peptidase M35-like domain of uncharacterized proteins	NA|1362aa|up_0|NC_007951.1_2390231_2394317_+	PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional	NA|86aa|down_0|NC_007951.1_2394655_2394913_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|431aa|down_1|NC_007951.1_2394902_2396195_+	cd17809, HipA_So_like, type II toxin-antitoxin sytem toxin HipA from Shewanella oneidensis and similar proteins	NA|260aa|down_2|NC_007951.1_2396344_2397124_-	PRK00059, prsA, peptidylprolyl isomerase; Provisional	NA|107aa|down_3|NC_007951.1_2397135_2397456_-	pfam01722, BolA, BolA-like protein	NA|177aa|down_4|NC_007951.1_2397457_2397988_-	PRK00259, PRK00259, intracellular septation protein A; Reviewed	NA|141aa|down_5|NC_007951.1_2398150_2398573_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|519aa|down_6|NC_007951.1_2398702_2400259_-	PRK00029, PRK00029, YdiU family protein	NA|563aa|down_7|NC_007951.1_2400456_2402145_+	PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated	NA|695aa|down_8|NC_007951.1_2402314_2404399_+	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|393aa|down_9|NC_007951.1_2404537_2405716_+	PRK07108, PRK07108, acetyl-CoA C-acyltransferase
GCF_000013645.1_ASM1364v1	NC_007951	Paraburkholderia xenovorans LB400 chromosome 1, complete sequence	3	3372291-3372362	3	CRISPRCasFinder	no		cas3,WYL,RT,DinG,DEDDh,csa3	Orphan	AGCGCTTACTCTGGTCCCATGCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,DinG,DEDDh,csa3	NA,NA	NA|202aa|up_9|NC_007951.1_3361032_3361638_-	TIGR04045, acetyltransferase_GNAT_family_protein, putative N-acetyltransferase, MSMEG_0567 N-terminal domain family	NA|371aa|up_8|NC_007951.1_3361640_3362753_-	TIGR04043, hypothetical_protein_WH5701_02349, radical SAM protein, MSMEG_0568 family	NA|349aa|up_7|NC_007951.1_3362703_3363750_-	TIGR04048, nitrilase_sll0784_family, putative nitrilase, sll0784 family	NA|161aa|up_6|NC_007951.1_3363769_3364252_-	TIGR04044, MSMEG_0572_fam, MSMEG_0572 family protein	NA|464aa|up_5|NC_007951.1_3364604_3365996_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|600aa|up_4|NC_007951.1_3366224_3368024_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|527aa|up_3|NC_007951.1_3368046_3369627_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|127aa|up_2|NC_007951.1_3369687_3370068_-	pfam18057, DUF5594, Domain of unknown function (DUF5594)	NA|117aa|up_1|NC_007951.1_3370167_3370518_-	COG4321, COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]	NA|529aa|up_0|NC_007951.1_3370663_3372250_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|238aa|down_0|NC_007951.1_3372377_3373091_-	PRK10019, PRK10019, nickel/cobalt efflux transporter RcnA	NA|133aa|down_1|NC_007951.1_3373204_3373603_-	TIGR00068, Lactoylglutathione_lyase, lactoylglutathione lyase	NA|137aa|down_2|NC_007951.1_3373996_3374407_+	pfam09391, DUF2000, Protein of unknown function (DUF2000)	NA|175aa|down_3|NC_007951.1_3374430_3374955_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|557aa|down_4|NC_007951.1_3374951_3376622_-	cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)	NA|307aa|down_5|NC_007951.1_3376618_3377539_-	cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR	NA|235aa|down_6|NC_007951.1_3377713_3378418_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|303aa|down_7|NC_007951.1_3378478_3379387_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|707aa|down_8|NC_007951.1_3379532_3381653_+	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ	NA|403aa|down_9|NC_007951.1_3381734_3382943_+	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit
GCF_000013645.1_ASM1364v1	NC_007953	Paraburkholderia xenovorans LB400 chromosome 3, complete sequence	1	273785-273856	1	CRISPRCasFinder	no			Orphan	TAAGCGCTAACTCCAGTCGACAG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,DinG,DEDDh,csa3	NA,NA|113aa|down_9|NC_007953.1_286641_286980_+	NA|316aa|up_9|NC_007953.1_262063_263011_+	TIGR01136, Cysteine_synthase, cysteine synthase	NA|319aa|up_8|NC_007953.1_263122_264079_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|438aa|up_7|NC_007953.1_264219_265533_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|509aa|up_6|NC_007953.1_265656_267183_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|299aa|up_5|NC_007953.1_267219_268116_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|337aa|up_4|NC_007953.1_268427_269438_-	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|379aa|up_3|NC_007953.1_269648_270785_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|259aa|up_2|NC_007953.1_270903_271680_+	PRK09076, PRK09076, enoyl-CoA hydratase; Provisional	NA|371aa|up_1|NC_007953.1_271699_272812_+	pfam16113, ECH_2, Enoyl-CoA hydratase/isomerase	NA|250aa|up_0|NC_007953.1_273001_273751_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|328aa|down_0|NC_007953.1_273868_274852_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|366aa|down_1|NC_007953.1_275710_276808_+	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain	NA|160aa|down_2|NC_007953.1_277154_277634_-	pfam11811, DUF3331, Domain of unknown function (DUF3331)	NA|180aa|down_3|NC_007953.1_278559_279099_+	pfam07813, LTXXQ, LTXXQ motif family protein	NA|493aa|down_4|NC_007953.1_279816_281295_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|195aa|down_5|NC_007953.1_281447_282032_-	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|235aa|down_6|NC_007953.1_282402_283107_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|514aa|down_7|NC_007953.1_283173_284715_-	TIGR04367, protein_of_the_SAM_superfamily, hopanoid C-3 methylase HpnR	NA|431aa|down_8|NC_007953.1_284805_286098_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|113aa|down_9|NC_007953.1_286641_286980_+	NA
