assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000013505.1_ASM1350v1	NC_008022	Streptococcus pyogenes MGAS10270, complete sequence	1	850515-850675	1	CRISPRCasFinder	no	cas9,cas1,cas2	cas3,DinG,csm6,cas9,cas1,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	 or Type II-C?,Type II-B,Type II-C, Type II-B,Type II-A	GTTTTAGAGCTATGCTGTTTTGAATGGTC	29	0	0	NA	NA	II-A	2	2	orTypeII-C?,TypeII-B,TypeII-C,TypeII-B,TypeII-A	cas3,DinG,csm6,cas9,cas1,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|214aa|up_7|NC_008022.1_839974_840616_+,NA	NA|319aa|up_9|NC_008022.1_837485_838442_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_8|NC_008022.1_838495_839851_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_7|NC_008022.1_839974_840616_+	NA	NA|377aa|up_6|NC_008022.1_840678_841809_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_5|NC_008022.1_841818_842571_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_4|NC_008022.1_842570_843335_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_3|NC_008022.1_843334_843967_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_2|NC_008022.1_844445_848552_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_1|NC_008022.1_848551_849421_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_0|NC_008022.1_849417_849759_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|611aa|down_0|NC_008022.1_851324_853157_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|483aa|down_1|NC_008022.1_853344_854793_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|146aa|down_2|NC_008022.1_854978_855416_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_3|NC_008022.1_855545_856565_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_4|NC_008022.1_856771_857197_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_5|NC_008022.1_857215_857707_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_6|NC_008022.1_857723_858533_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_7|NC_008022.1_858529_859357_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_8|NC_008022.1_859492_861142_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_9|NC_008022.1_861145_861934_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
GCF_000013505.1_ASM1350v1	NC_008022	Streptococcus pyogenes MGAS10270, complete sequence	2	1048793-1048894	2	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|262aa|down_6|NC_008022.1_1056723_1057509_+	NA|83aa|up_9|NC_008022.1_1036508_1036757_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|NC_008022.1_1037119_1039438_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|NC_008022.1_1039967_1041290_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|NC_008022.1_1041409_1042645_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|NC_008022.1_1043014_1043788_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NC_008022.1_1044157_1044994_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NC_008022.1_1045009_1045639_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NC_008022.1_1045648_1046290_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NC_008022.1_1046396_1046732_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NC_008022.1_1046927_1048742_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NC_008022.1_1048917_1049475_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NC_008022.1_1049692_1051195_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NC_008022.1_1051256_1052270_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NC_008022.1_1052349_1055460_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NC_008022.1_1055644_1056016_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NC_008022.1_1056015_1056714_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NC_008022.1_1056723_1057509_+	NA	NA|205aa|down_7|NC_008022.1_1057635_1058250_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|207aa|down_8|NC_008022.1_1058990_1059611_+	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|755aa|down_9|NC_008022.1_1059867_1062132_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
GCF_000013505.1_ASM1350v1	NC_008022	Streptococcus pyogenes MGAS10270, complete sequence	3	1298991-1299222	1,1,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas9,cas1,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type I-C, Type I-U?,Type I-U	TATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC,TTTCAATCCACTCACCCATGAAGGGTGAGAC	33,32,31	0	0	NA	NA	I-C:I-C:I-C	3,3,3	3	TypeI-C,TypeI-U?,TypeI-U	cas3,DinG,csm6,cas9,cas1,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|50aa|up_9|NC_008022.1_1291759_1291909_-,NA|64aa|up_7|NC_008022.1_1292680_1292872_-,NA|174aa|up_4|NC_008022.1_1294431_1294953_+,NA|188aa|down_7|NC_008022.1_1310193_1310757_-	NA|50aa|up_9|NC_008022.1_1291759_1291909_-	NA	NA|243aa|up_8|NC_008022.1_1291941_1292670_-	COG3561, COG3561, Phage anti-repressor protein [Transcription]	NA|64aa|up_7|NC_008022.1_1292680_1292872_-	NA	NA|120aa|up_6|NC_008022.1_1293667_1294027_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|127aa|up_5|NC_008022.1_1294040_1294421_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|174aa|up_4|NC_008022.1_1294431_1294953_+	NA	NA|385aa|up_3|NC_008022.1_1295071_1296226_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|369aa|up_2|NC_008022.1_1296336_1297443_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NC_008022.1_1297485_1298109_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NC_008022.1_1298121_1298832_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NC_008022.1_1299370_1299664_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas4|225aa|down_1|NC_008022.1_1300696_1301371_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_2|NC_008022.1_1301372_1302221_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_3|NC_008022.1_1302225_1304121_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|251aa|down_4|NC_008022.1_1304096_1304849_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_5|NC_008022.1_1304981_1307390_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_6|NC_008022.1_1307543_1310192_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_7|NC_008022.1_1310193_1310757_-	NA	NA|132aa|down_8|NC_008022.1_1311357_1311753_-	PRK07758, PRK07758, hypothetical protein; Provisional	NA|85aa|down_9|NC_008022.1_1311770_1312025_-	pfam08930, DUF1912, Domain of unknown function (DUF1912)
GCF_000013505.1_ASM1350v1	NC_008022	Streptococcus pyogenes MGAS10270, complete sequence	4	1886118-1886214	4	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|58aa|up_9|NC_008022.1_1881223_1881397_-,NA|538aa|up_8|NC_008022.1_1881683_1883297_-,NA|174aa|up_7|NC_008022.1_1883286_1883808_-,NA|123aa|up_6|NC_008022.1_1883817_1884186_-,NA|64aa|up_5|NC_008022.1_1884094_1884286_-,NA|111aa|up_4|NC_008022.1_1884285_1884618_-,NA|61aa|up_3|NC_008022.1_1884629_1884812_-,NA|81aa|up_2|NC_008022.1_1885032_1885275_-,NA	NA|58aa|up_9|NC_008022.1_1881223_1881397_-	NA	NA|538aa|up_8|NC_008022.1_1881683_1883297_-	NA	NA|174aa|up_7|NC_008022.1_1883286_1883808_-	NA	NA|123aa|up_6|NC_008022.1_1883817_1884186_-	NA	NA|64aa|up_5|NC_008022.1_1884094_1884286_-	NA	NA|111aa|up_4|NC_008022.1_1884285_1884618_-	NA	NA|61aa|up_3|NC_008022.1_1884629_1884812_-	NA	NA|81aa|up_2|NC_008022.1_1885032_1885275_-	NA	NA|189aa|up_1|NC_008022.1_1885331_1885898_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|NC_008022.1_1885913_1886102_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|NC_008022.1_1886270_1886714_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|NC_008022.1_1886893_1888057_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|NC_008022.1_1888213_1888825_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|NC_008022.1_1889555_1889828_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|456aa|down_4|NC_008022.1_1889844_1891212_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|NC_008022.1_1891241_1891694_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|NC_008022.1_1891690_1893667_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|NC_008022.1_1893756_1895655_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|NC_008022.1_1895778_1896096_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|NC_008022.1_1896871_1897993_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
