assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000013485.1_ASM1348v1	NC_008021	Streptococcus pyogenes MGAS9429, complete sequence	1	1045538-1045639	1	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|262aa|down_6|NC_008021.1_1053469_1054255_+	NA|83aa|up_9|NC_008021.1_1033267_1033516_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|NC_008021.1_1033879_1036198_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|NC_008021.1_1036726_1038049_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|NC_008021.1_1038168_1039404_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|NC_008021.1_1039773_1040547_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NC_008021.1_1040916_1041753_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NC_008021.1_1041768_1042398_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NC_008021.1_1042407_1043049_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NC_008021.1_1043155_1043491_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NC_008021.1_1043672_1045487_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NC_008021.1_1045662_1046220_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NC_008021.1_1046437_1047940_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NC_008021.1_1048002_1049016_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NC_008021.1_1049095_1052206_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NC_008021.1_1052390_1052762_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NC_008021.1_1052761_1053460_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NC_008021.1_1053469_1054255_+	NA	NA|205aa|down_7|NC_008021.1_1054387_1055002_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|207aa|down_8|NC_008021.1_1055742_1056363_+	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|755aa|down_9|NC_008021.1_1056619_1058884_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
GCF_000013485.1_ASM1348v1	NC_008021	Streptococcus pyogenes MGAS9429, complete sequence	2	1234060-1234560	1,2,1	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	 Type I-U?,Type I-U,Type I-C	TATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC	33,32,32	3	3	1234093-1234124|1234093-1234125|1234094-1234126	NC_008021.1_8461-8430|NC_008021.1_8461-8429|NC_008021.1_8461-8429	I-C:I-C:I-C	7,7,7	7	TypeI-U?,TypeI-U,TypeI-C	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA	NA|412aa|up_9|NC_008021.1_1223986_1225222_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|227aa|up_8|NC_008021.1_1225495_1226176_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_7|NC_008021.1_1226317_1226791_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|239aa|up_6|NC_008021.1_1226956_1227673_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|360aa|up_5|NC_008021.1_1227695_1228775_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_4|NC_008021.1_1228847_1230581_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_3|NC_008021.1_1230577_1231318_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_2|NC_008021.1_1231405_1232512_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NC_008021.1_1232554_1233178_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NC_008021.1_1233190_1233901_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NC_008021.1_1234708_1235002_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|NC_008021.1_1235012_1236038_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|NC_008021.1_1236034_1236709_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|NC_008021.1_1236710_1237559_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_4|NC_008021.1_1237563_1239459_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_5|NC_008021.1_1239458_1240187_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_6|NC_008021.1_1240319_1242728_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_7|NC_008021.1_1242881_1245530_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_8|NC_008021.1_1245531_1246095_-	pfam13238, AAA_18, AAA domain	NA|132aa|down_9|NC_008021.1_1246695_1247091_-	PRK07758, PRK07758, hypothetical protein; Provisional
