assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000013425.1_ASM1342v1	NC_007795	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome, complete genome	1	375413-375513	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_9|NC_007795.1_366985_367195_-,NA|128aa|up_7|NC_007795.1_368019_368403_-,NA|98aa|up_5|NC_007795.1_369356_369650_-,NA|34aa|up_0|NC_007795.1_374637_374739_+,NA|221aa|down_1|NC_007795.1_376603_377266_-,NA|179aa|down_7|NC_007795.1_383357_383894_-	NA|70aa|up_9|NC_007795.1_366985_367195_-	NA	NA|194aa|up_8|NC_007795.1_367372_367954_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NC_007795.1_368019_368403_-	NA	NA|209aa|up_6|NC_007795.1_368657_369284_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_5|NC_007795.1_369356_369650_-	NA	NA|508aa|up_4|NC_007795.1_369728_371252_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NC_007795.1_371267_371837_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NC_007795.1_372328_373084_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NC_007795.1_373164_374553_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NC_007795.1_374637_374739_+	NA	NA|319aa|down_0|NC_007795.1_375529_376486_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NC_007795.1_376603_377266_-	NA	NA|136aa|down_2|NC_007795.1_377408_377816_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_007795.1_378328_378907_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_007795.1_378906_380175_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_007795.1_380212_381679_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_007795.1_381703_383245_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NC_007795.1_383357_383894_-	NA	NA|235aa|down_8|NC_007795.1_384286_384991_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NC_007795.1_385389_385662_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000013425.1_ASM1342v1	NC_007795	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome, complete genome	2	604869-604961	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NC_007795.1_601352_601460_+,NA|169aa|down_4|NC_007795.1_608708_609215_+,NA|239aa|down_5|NC_007795.1_609376_610093_+	NA|313aa|up_9|NC_007795.1_595554_596493_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NC_007795.1_596703_597240_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NC_007795.1_597408_597885_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NC_007795.1_597924_599220_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NC_007795.1_599247_599769_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NC_007795.1_600267_601278_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NC_007795.1_601352_601460_+	NA	NA|128aa|up_2|NC_007795.1_601585_601969_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NC_007795.1_601965_603627_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NC_007795.1_604015_604651_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NC_007795.1_605089_605917_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NC_007795.1_606064_607015_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NC_007795.1_607069_607789_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NC_007795.1_607772_608573_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NC_007795.1_608708_609215_+	NA	NA|239aa|down_5|NC_007795.1_609376_610093_+	NA	NA|263aa|down_6|NC_007795.1_610261_611050_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NC_007795.1_611300_611675_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|298aa|down_8|NC_007795.1_612622_613516_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NC_007795.1_613746_613971_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_000013425.1_ASM1342v1	NC_007795	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome, complete genome	3	668129-668227	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|NC_007795.1_666156_666273_+,NA|230aa|down_2|NC_007795.1_670048_670738_-,NA|100aa|down_5|NC_007795.1_671907_672207_+	NA|336aa|up_9|NC_007795.1_657936_658944_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|NC_007795.1_659531_660329_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|NC_007795.1_660689_661334_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|NC_007795.1_662030_664181_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|142aa|up_5|NC_007795.1_664260_664686_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NC_007795.1_664875_665592_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NC_007795.1_665591_666065_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NC_007795.1_666156_666273_+	NA	NA|215aa|up_1|NC_007795.1_666417_667062_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NC_007795.1_667177_668044_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NC_007795.1_668244_669465_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NC_007795.1_669461_669950_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NC_007795.1_670048_670738_-	NA	NA|148aa|down_3|NC_007795.1_670864_671308_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|132aa|down_4|NC_007795.1_671374_671770_+	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|100aa|down_5|NC_007795.1_671907_672207_+	NA	NA|181aa|down_6|NC_007795.1_672286_672829_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|NC_007795.1_672924_673491_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|NC_007795.1_673492_673951_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|NC_007795.1_673953_674637_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_000013425.1_ASM1342v1	NC_007795	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome, complete genome	4	811557-811638	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	811581-811614|811581-811614	NC_007795.1_1286786-1286753|NC_007795.1_1375195-1375228	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NC_007795.1_810459_810573_+,NA|38aa|down_0|NC_007795.1_811871_811985_+	NA|206aa|up_9|NC_007795.1_805314_805932_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NC_007795.1_806086_806581_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NC_007795.1_806979_807402_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NC_007795.1_807549_808266_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NC_007795.1_808348_808888_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NC_007795.1_809037_809358_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NC_007795.1_809501_809858_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NC_007795.1_810015_810396_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NC_007795.1_810459_810573_+	NA	NA|293aa|up_0|NC_007795.1_810574_811453_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_0|NC_007795.1_811871_811985_+	NA	NA|129aa|down_1|NC_007795.1_812194_812581_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_2|NC_007795.1_812573_812870_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_3|NC_007795.1_813119_814145_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_4|NC_007795.1_814137_814833_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_5|NC_007795.1_814850_815672_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_6|NC_007795.1_816025_816220_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_7|NC_007795.1_816452_817304_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_8|NC_007795.1_817631_818393_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_9|NC_007795.1_818490_819798_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_000013425.1_ASM1342v1	NC_007795	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome, complete genome	5	860412-860694	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	9	860442-860467|860442-860467|860442-860467|860442-860467|860442-860467|860442-860467|860556-860581|860556-860581|860556-860581	NC_007795.1_768306-768281|NC_007795.1_860386-860411|NC_007795.1_730502-730527|NC_007795.1_1078585-1078610|NC_007795.1_2778823-2778798|NC_007795.1_2778879-2778854|NC_007795.1_768362-768337|NC_007795.1_768418-768393|NC_007795.1_336800-336825	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NC_007795.1_849300_850797_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NC_007795.1_850789_851119_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NC_007795.1_851130_851559_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NC_007795.1_851551_853957_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NC_007795.1_854087_854471_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NC_007795.1_854534_855128_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|115aa|up_3|NC_007795.1_855576_855921_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NC_007795.1_856282_857410_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NC_007795.1_857717_858908_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NC_007795.1_859016_860261_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NC_007795.1_860763_861693_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NC_007795.1_861934_863314_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NC_007795.1_863303_864509_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NC_007795.1_864859_866191_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NC_007795.1_866515_867091_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NC_007795.1_867095_867620_+	TIGR02227, Inactive_signal_peptidase_IA	NA|156aa|down_6|NC_007795.1_867743_868211_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NC_007795.1_868370_871847_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NC_007795.1_871847_875501_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NC_007795.1_875666_876569_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_000013425.1_ASM1342v1	NC_007795	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome, complete genome	6	994097-994184	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NC_007795.1_993973_994093_+,NA|45aa|down_0|NC_007795.1_994193_994328_-,NA|432aa|down_1|NC_007795.1_994479_995775_+	NA|730aa|up_9|NC_007795.1_982551_984741_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NC_007795.1_984719_986204_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NC_007795.1_986196_987225_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NC_007795.1_987227_987794_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NC_007795.1_987808_989287_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NC_007795.1_989308_990556_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NC_007795.1_990820_991627_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NC_007795.1_991619_993020_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NC_007795.1_993034_993610_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NC_007795.1_993973_994093_+	NA	NA|45aa|down_0|NC_007795.1_994193_994328_-	NA	NA|432aa|down_1|NC_007795.1_994479_995775_+	NA	NA|391aa|down_2|NC_007795.1_996199_997372_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NC_007795.1_997425_997968_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NC_007795.1_998121_998388_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NC_007795.1_998390_1000109_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NC_007795.1_1000345_1000579_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NC_007795.1_1000776_1002138_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NC_007795.1_1002134_1003154_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NC_007795.1_1003286_1003949_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_000013425.1_ASM1342v1	NC_007795	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome, complete genome	7	1776484-1776694	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGANNN	41	3	27	1776522-1776542|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776581-1776600|1776639-1776656	NC_007795.1_1776463-1776483|NC_007795.1_115358-115377|NC_007795.1_258556-258575|NC_007795.1_336931-336950|NC_007795.1_762855-762836|NC_007795.1_762910-762891|NC_007795.1_768515-768496|NC_007795.1_768573-768554|NC_007795.1_768631-768612|NC_007795.1_811654-811635|NC_007795.1_880112-880093|NC_007795.1_1004099-1004080|NC_007795.1_1286654-1286673|NC_007795.1_1375327-1375308|NC_007795.1_1597724-1597705|NC_007795.1_1776408-1776427|NC_007795.1_1978330-1978311|NC_007795.1_2527567-2527586|NC_007795.1_2778917-2778898|NC_007795.1_258610-258629|NC_007795.1_775721-775702|NC_007795.1_1078547-1078566|NC_007795.1_1335999-1335980|NC_007795.1_1631690-1631671|NC_007795.1_1987679-1987660|NC_007795.1_735102-735121|NC_007795.1_1776466-1776483	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|199aa|up_9|NC_007795.1_1767003_1767600_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|NC_007795.1_1767628_1768486_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|NC_007795.1_1768585_1768897_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|NC_007795.1_1768961_1770038_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_5|NC_007795.1_1770124_1770436_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|NC_007795.1_1770560_1771403_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|NC_007795.1_1771872_1772517_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|242aa|up_2|NC_007795.1_1772531_1773257_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|NC_007795.1_1773872_1774721_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|NC_007795.1_1774724_1776134_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|NC_007795.1_1776997_1777420_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|NC_007795.1_1777436_1778132_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|NC_007795.1_1778128_1779790_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|NC_007795.1_1780196_1781465_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|NC_007795.1_1781581_1788142_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|NC_007795.1_1788484_1788796_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_6|NC_007795.1_1788817_1791235_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|NC_007795.1_1791522_1792704_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|NC_007795.1_1792813_1793767_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|NC_007795.1_1793763_1794327_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCF_000013425.1_ASM1342v1	NC_007795	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome, complete genome	8	1976881-1976959	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	1976904-1976936|1976904-1976936|1976904-1976936|1976904-1976936|1976904-1976936|1976904-1976936	NC_007795.1_768317-768349|NC_007795.1_768373-768405|NC_007795.1_1286740-1286708|NC_007795.1_1597754-1597786|NC_007795.1_2613523-2613555|NC_007795.1_1375241-1375273	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NC_007795.1_1971075_1971351_+,NA|129aa|up_1|NC_007795.1_1975336_1975723_-,NA|138aa|down_1|NC_007795.1_1978642_1979056_-,NA|37aa|down_2|NC_007795.1_1979084_1979195_-,NA|31aa|down_6|NC_007795.1_1982200_1982293_-	NA|419aa|up_9|NC_007795.1_1968998_1970255_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NC_007795.1_1970257_1970458_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NC_007795.1_1970604_1971069_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NC_007795.1_1971075_1971351_+	NA	NA|406aa|up_5|NC_007795.1_1971628_1972846_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NC_007795.1_1972961_1973591_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NC_007795.1_1973580_1974624_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NC_007795.1_1974620_1975322_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NC_007795.1_1975336_1975723_-	NA	NA|253aa|up_0|NC_007795.1_1975939_1976698_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NC_007795.1_1977225_1978212_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NC_007795.1_1978642_1979056_-	NA	NA|37aa|down_2|NC_007795.1_1979084_1979195_-	NA	NA|244aa|down_3|NC_007795.1_1979280_1980012_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NC_007795.1_1980013_1981327_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NC_007795.1_1981618_1982119_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NC_007795.1_1982200_1982293_-	NA	DEDDh|185aa|down_7|NC_007795.1_1982507_1983062_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|347aa|down_8|NC_007795.1_1983129_1984170_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NC_007795.1_1984446_1984977_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_000013425.1_ASM1342v1	NC_007795	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome, complete genome	9	2211683-2211772	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_6|NC_007795.1_2206554_2206785_-,NA|364aa|up_0|NC_007795.1_2210574_2211666_+,NA|35aa|down_0|NC_007795.1_2212108_2212213_-,NA|31aa|down_2|NC_007795.1_2214324_2214417_+	NA|148aa|up_9|NC_007795.1_2202995_2203439_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_8|NC_007795.1_2203638_2204052_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_7|NC_007795.1_2204509_2205883_-	pfam01878, EVE, EVE domain	NA|77aa|up_6|NC_007795.1_2206554_2206785_-	NA	NA|286aa|up_5|NC_007795.1_2206815_2207673_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|75aa|up_4|NC_007795.1_2207608_2207833_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NC_007795.1_2208189_2208855_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NC_007795.1_2209006_2209327_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NC_007795.1_2209328_2210309_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NC_007795.1_2210574_2211666_+	NA	NA|35aa|down_0|NC_007795.1_2212108_2212213_-	NA	NA|379aa|down_1|NC_007795.1_2212899_2214036_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NC_007795.1_2214324_2214417_+	NA	NA|286aa|down_3|NC_007795.1_2215121_2215979_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NC_007795.1_2216046_2216829_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NC_007795.1_2217060_2218866_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NC_007795.1_2219546_2221085_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NC_007795.1_2221119_2223252_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NC_007795.1_2223263_2223698_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NC_007795.1_2223697_2224804_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_000013425.1_ASM1342v1	NC_007795	Staphylococcus aureus subsp. aureus NCTC 8325 chromosome, complete genome	10	2335711-2335904	3	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	14	2335734-2335766|2335734-2335766|2335734-2335766|2335734-2335766|2335734-2335766|2335790-2335825|2335790-2335825|2335790-2335825|2335790-2335825|2335849-2335881|2335849-2335881|2335849-2335881|2335849-2335881|2335849-2335881	NC_007795.1_768317-768349|NC_007795.1_768373-768405|NC_007795.1_1286740-1286708|NC_007795.1_1375241-1375273|NC_007795.1_2613523-2613555|NC_007795.1_1078578-1078543|NC_007795.1_1776439-1776404|NC_007795.1_1597693-1597728|NC_007795.1_1987648-1987683|NC_007795.1_768261-768293|NC_007795.1_768317-768349|NC_007795.1_768373-768405|NC_007795.1_1286740-1286708|NC_007795.1_2613523-2613555	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NC_007795.1_2326236_2326401_+,NA|106aa|up_8|NC_007795.1_2326645_2326963_+,NA|84aa|up_5|NC_007795.1_2332087_2332339_+,NA|57aa|up_0|NC_007795.1_2335480_2335651_+,NA	NA|55aa|up_9|NC_007795.1_2326236_2326401_+	NA	NA|106aa|up_8|NC_007795.1_2326645_2326963_+	NA	NA|1056aa|up_7|NC_007795.1_2327149_2330317_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_007795.1_2330433_2331699_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_007795.1_2332087_2332339_+	NA	NA|255aa|up_4|NC_007795.1_2332330_2333095_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_007795.1_2333256_2333697_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_007795.1_2333689_2334901_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_007795.1_2335004_2335355_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NC_007795.1_2335480_2335651_+	NA	NA|341aa|down_0|NC_007795.1_2336045_2337068_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_007795.1_2337087_2337687_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_007795.1_2337693_2337927_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_007795.1_2337932_2338379_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_007795.1_2338392_2338878_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_007795.1_2338874_2340134_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_007795.1_2340196_2340691_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_007795.1_2340692_2341199_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_007795.1_2341229_2342234_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_007795.1_2342403_2343009_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
