assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000013405.1_ASM1340v1	NC_007759	Syntrophus aciditrophicus SB, complete sequence	1	243162-243270	1	CRISPRCasFinder	no		cas6,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm6,cas1,cas2,RT,WYL,cas3,cas3HD,DinG,cas4,cas7,cas8c,cas5,csa3	Orphan	AATGCAGGTTTAATAGATTTCCAGGAATATTCACAC	36	0	0	NA	NA	NA	1	1	Orphan	cas6,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm6,cas1,cas2,RT,WYL,cas3,cas3HD,DinG,cas4,cas7,cas8c,cas5,csa3	NA,NA|100aa|down_2|NC_007759.1_247998_248298_-,NA|90aa|down_5|NC_007759.1_251948_252218_+,NA|65aa|down_6|NC_007759.1_252698_252893_-	NA|556aa|up_9|NC_007759.1_227555_229223_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|385aa|up_8|NC_007759.1_229521_230676_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|382aa|up_7|NC_007759.1_230707_231853_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|217aa|up_6|NC_007759.1_232135_232786_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|521aa|up_5|NC_007759.1_232852_234415_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|1067aa|up_4|NC_007759.1_234434_237635_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|418aa|up_3|NC_007759.1_237779_239033_-	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|258aa|up_2|NC_007759.1_239215_239989_-	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|314aa|up_1|NC_007759.1_240090_241032_-	cd01144, BtuF, Cobalamin binding protein BtuF	NA|666aa|up_0|NC_007759.1_241138_243136_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|347aa|down_0|NC_007759.1_244280_245321_-	pfam01032, FecCD, FecCD transport family	NA|661aa|down_1|NC_007759.1_245799_247782_-	cd07302, CHD, cyclase homology domain	NA|100aa|down_2|NC_007759.1_247998_248298_-	NA	NA|358aa|down_3|NC_007759.1_248604_249678_+	cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya	NA|444aa|down_4|NC_007759.1_250085_251417_-	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit	NA|90aa|down_5|NC_007759.1_251948_252218_+	NA	NA|65aa|down_6|NC_007759.1_252698_252893_-	NA	NA|401aa|down_7|NC_007759.1_252892_254095_-	TIGR03136, decarboxylase_subunit_of_malonate_decarboxylase, Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit	NA|405aa|down_8|NC_007759.1_254131_255346_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|67aa|down_9|NC_007759.1_256171_256372_-	COG1278, CspC, Cold shock proteins [Transcription]
GCF_000013405.1_ASM1340v1	NC_007759	Syntrophus aciditrophicus SB, complete sequence	2	601771-607660	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm6,cas1,cas2	cas6,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm6,cas1,cas2,RT,WYL,cas3,cas3HD,DinG,cas4,cas7,cas8c,cas5,csa3	Type III-B,Type III-C,Type III-D,Type III-A	GACAGAATTGACCTGATTTACGAAGGGATTGCGAC,GACAGAATTGACCTGATTTACGAAGGGATTGCGAC,GACAGAATTGACCTGATTTACGAAGGGATTGCGAC	35,35,35	0	0	NA	NA	NA:NA:NA	77,79,78	79	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	cas6,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm6,cas1,cas2,RT,WYL,cas3,cas3HD,DinG,cas4,cas7,cas8c,cas5,csa3	NA,NA|203aa|down_3|NC_007759.1_609540_610149_-,NA|323aa|down_6|NC_007759.1_612830_613799_-,NA|122aa|down_7|NC_007759.1_613811_614177_-	cas6|317aa|up_9|NC_007759.1_589528_590479_+	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	csx1|378aa|up_8|NC_007759.1_590475_591609_+	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cmr1gr7|290aa|up_7|NC_007759.1_591828_592698_+	TIGR01894, hypothetical_protein, CRISPR type III-B/RAMP module RAMP protein Cmr1	cas10|903aa|up_6|NC_007759.1_592715_595424_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr3gr5|318aa|up_5|NC_007759.1_595431_596385_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cmr4gr7|301aa|up_4|NC_007759.1_596395_597298_+	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr5gr11|132aa|up_3|NC_007759.1_597294_597690_+	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5	cmr6gr7|464aa|up_2|NC_007759.1_597703_599095_+	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	csm6|371aa|up_1|NC_007759.1_599139_600252_+	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csx1|413aa|up_0|NC_007759.1_600268_601507_+	pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710)	cas1|387aa|down_0|NC_007759.1_607745_608906_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|92aa|down_1|NC_007759.1_608902_609178_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas2|93aa|down_2|NC_007759.1_609194_609473_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|203aa|down_3|NC_007759.1_609540_610149_-	NA	NA|402aa|down_4|NC_007759.1_610430_611636_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|342aa|down_5|NC_007759.1_611812_612838_-	pfam13481, AAA_25, AAA domain	NA|323aa|down_6|NC_007759.1_612830_613799_-	NA	NA|122aa|down_7|NC_007759.1_613811_614177_-	NA	NA|367aa|down_8|NC_007759.1_614573_615674_+	pfam01950, FBPase_3, Fructose-1,6-bisphosphatase	NA|375aa|down_9|NC_007759.1_615749_616874_+	pfam09587, PGA_cap, Bacterial capsule synthesis protein PGA_cap
GCF_000013405.1_ASM1340v1	NC_007759	Syntrophus aciditrophicus SB, complete sequence	3	2747386-2752983	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL	cas6,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm6,cas1,cas2,RT,WYL,cas3,cas3HD,DinG,cas4,cas7,cas8c,cas5,csa3	Type I-U, Type I-U?,Type I-C	GTTTCAATCCACGCCCCCGCATGGGGGGCGAC,GTTTCAATCCACGCCCCCGCATGGGGGGCGAC,GTTTCAATCCACGCCCCCGCATGGGGGGCGAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	84,84,82	84	TypeI-U,TypeI-C,TypeI-U?	cas6,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm6,cas1,cas2,RT,WYL,cas3,cas3HD,DinG,cas4,cas7,cas8c,cas5,csa3	NA|125aa|up_5|NC_007759.1_2741056_2741431_-,NA	NA|1424aa|up_9|NC_007759.1_2734823_2739095_+	pfam06202, GDE_C, Amylo-alpha-1,6-glucosidase	NA|277aa|up_8|NC_007759.1_2739128_2739959_-	cd07336, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	NA|69aa|up_7|NC_007759.1_2740057_2740264_-	pfam04024, PspC, PspC domain	NA|150aa|up_6|NC_007759.1_2740573_2741023_+	PRK00203, rnhA, ribonuclease H; Reviewed	NA|125aa|up_5|NC_007759.1_2741056_2741431_-	NA	NA|170aa|up_4|NC_007759.1_2741495_2742005_-	pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis protein B	NA|277aa|up_3|NC_007759.1_2742254_2743085_+	cd16341, FdhE, formate dehydrogenase accessory protein FdhE and similar proteins	NA|207aa|up_2|NC_007759.1_2743109_2743730_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|581aa|up_1|NC_007759.1_2743871_2745614_-	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX	NA|131aa|up_0|NC_007759.1_2746622_2747015_+	TIGR00810, secG, protein translocase, SecG subunit	cas2|97aa|down_0|NC_007759.1_2753164_2753455_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|NC_007759.1_2753500_2754532_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|211aa|down_2|NC_007759.1_2754528_2755161_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|292aa|down_3|NC_007759.1_2755236_2756112_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|642aa|down_4|NC_007759.1_2756135_2758061_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|257aa|down_5|NC_007759.1_2758057_2758828_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|819aa|down_6|NC_007759.1_2758820_2761277_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|89aa|down_7|NC_007759.1_2761346_2761613_-	PRK08517, PRK08517, 3'-5' exonuclease	NA|421aa|down_8|NC_007759.1_2761632_2762895_-	pfam00872, Transposase_mut, Transposase, Mutator family	WYL|322aa|down_9|NC_007759.1_2763040_2764006_-	pfam13280, WYL, WYL domain
