assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000013365.1_ASM1336v1	NC_007778	Rhodopseudomonas palustris HaA2, complete genome	1	693310-693393	1	CRISPRCasFinder	no		DEDDh,csa3,cas3	Orphan	GCTCCCTCTCCCGCTTGCGGGAGAGGG	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3	NA,NA	NA|719aa|up_9|NC_007778.1_678924_681081_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|340aa|up_8|NC_007778.1_681357_682377_+	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219)	NA|245aa|up_7|NC_007778.1_682555_683290_+	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|563aa|up_6|NC_007778.1_683879_685568_+	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|313aa|up_5|NC_007778.1_685601_686540_-	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily	NA|733aa|up_4|NC_007778.1_686789_688988_+	PRK15061, PRK15061, catalase/peroxidase	NA|282aa|up_3|NC_007778.1_689470_690316_-	PRK06505, PRK06505, enoyl-[acyl-carrier-protein] reductase FabI	NA|409aa|up_2|NC_007778.1_690511_691738_-	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|177aa|up_1|NC_007778.1_691804_692335_-	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|163aa|up_0|NC_007778.1_692594_693083_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|175aa|down_0|NC_007778.1_693438_693963_-	COG3807, COG3807, Uncharacterized protein conserved in bacteria [Function unknown]	NA|334aa|down_1|NC_007778.1_694248_695250_+	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)	NA|266aa|down_2|NC_007778.1_695452_696250_-	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional	NA|461aa|down_3|NC_007778.1_696545_697928_+	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	NA|294aa|down_4|NC_007778.1_698152_699034_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|254aa|down_5|NC_007778.1_699168_699930_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|525aa|down_6|NC_007778.1_699926_701501_+	TIGR01982, Probable_protein_kinase_UbiB, 2-polyprenylphenol 6-hydroxylase	NA|486aa|down_7|NC_007778.1_701602_703060_+	PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional	NA|153aa|down_8|NC_007778.1_703056_703515_+	PRK00601, dut, dUTP diphosphatase	NA|838aa|down_9|NC_007778.1_703695_706209_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_000013365.1_ASM1336v1	NC_007778	Rhodopseudomonas palustris HaA2, complete genome	2	914486-914585	2	CRISPRCasFinder	no		DEDDh,csa3,cas3	Orphan	GCGATCACCCTCGACAACCACGAGGGCG	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3	NA,NA|145aa|down_1|NC_007778.1_922848_923283_+,NA|155aa|down_2|NC_007778.1_923807_924272_-,NA|171aa|down_3|NC_007778.1_924564_925077_-	NA|660aa|up_9|NC_007778.1_889903_891883_-	TIGR03768, RPA4764, metallophosphoesterase, RPA4764 family	NA|448aa|up_8|NC_007778.1_892287_893631_-	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|485aa|up_7|NC_007778.1_893896_895351_+	cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|135aa|up_6|NC_007778.1_895358_895763_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|119aa|up_5|NC_007778.1_895875_896232_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|281aa|up_4|NC_007778.1_896294_897137_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|193aa|up_3|NC_007778.1_897296_897875_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|441aa|up_2|NC_007778.1_898197_899520_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|594aa|up_1|NC_007778.1_899530_901312_-	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|2663aa|up_0|NC_007778.1_901810_909799_+	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only]	NA|1237aa|down_0|NC_007778.1_919004_922715_+	cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins	NA|145aa|down_1|NC_007778.1_922848_923283_+	NA	NA|155aa|down_2|NC_007778.1_923807_924272_-	NA	NA|171aa|down_3|NC_007778.1_924564_925077_-	NA	NA|539aa|down_4|NC_007778.1_925466_927083_+	cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins	NA|436aa|down_5|NC_007778.1_927480_928788_-	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]	NA|118aa|down_6|NC_007778.1_929063_929417_-	pfam05239, PRC, PRC-barrel domain	NA|241aa|down_7|NC_007778.1_930039_930762_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|294aa|down_8|NC_007778.1_930833_931715_+	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS	NA|405aa|down_9|NC_007778.1_931823_933038_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS
GCF_000013365.1_ASM1336v1	NC_007778	Rhodopseudomonas palustris HaA2, complete genome	3	1211969-1212047	3	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3	Type I-A	TGGGGTGAGGGCGCGCCGAGCAC	23	1	12	1211992-1212024|1211992-1212024|1211992-1212024|1211992-1212024|1211992-1212024|1211992-1212024|1211992-1212024|1211992-1212024|1211992-1212024|1211992-1212024|1211992-1212024|1211992-1212024	NC_007778.1_1550264-1550232|NC_007778.1_3988558-3988590|NC_007778.1_4702769-4702737|NC_007778.1_5320930-5320898|NC_007778.1_1333878-1333846|NC_007778.1_4778348-4778380|NC_007778.1_5147605-5147637|NC_007778.1_61975-62007|NC_007778.1_421557-421589|NC_007778.1_954506-954538|NC_007778.1_965204-965172|NC_007778.1_1138013-1137981	NA	1	1	Orphan	DEDDh,csa3,cas3	NA,NA|69aa|down_1|NC_007778.1_1214062_1214269_+	NA|307aa|up_9|NC_007778.1_1203969_1204890_+	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]	NA|349aa|up_8|NC_007778.1_1204879_1205926_+	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter	NA|286aa|up_7|NC_007778.1_1205939_1206797_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	csa3|142aa|up_6|NC_007778.1_1206970_1207396_+	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|123aa|up_5|NC_007778.1_1207414_1207783_-	cd01527, RHOD_YgaP, Member of the Rhodanese Homology Domain superfamily	NA|377aa|up_4|NC_007778.1_1207808_1208939_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|205aa|up_3|NC_007778.1_1209153_1209768_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|131aa|up_2|NC_007778.1_1209787_1210180_-	cd03033, ArsC_15kD, Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC	NA|210aa|up_1|NC_007778.1_1210191_1210821_-	pfam10649, DUF2478, Protein of unknown function (DUF2478)	NA|283aa|up_0|NC_007778.1_1211056_1211905_+	cd01573, modD_like, ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport	NA|546aa|down_0|NC_007778.1_1212174_1213812_-	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13	NA|69aa|down_1|NC_007778.1_1214062_1214269_+	NA	NA|196aa|down_2|NC_007778.1_1214361_1214949_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|128aa|down_3|NC_007778.1_1215068_1215452_+	PRK13378, PRK13378, protocatechuate 4,5-dioxygenase subunit alpha; Provisional	NA|286aa|down_4|NC_007778.1_1215466_1216324_+	PRK13364, PRK13364, protocatechuate 4,5-dioxygenase subunit beta; Provisional	NA|396aa|down_5|NC_007778.1_1216493_1217681_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|649aa|down_6|NC_007778.1_1217802_1219749_-	COG2015, COG2015, Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|127aa|down_7|NC_007778.1_1220020_1220401_-	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown]	NA|328aa|down_8|NC_007778.1_1220465_1221449_-	pfam09243, Rsm22, Mitochondrial small ribosomal subunit Rsm22	NA|1155aa|down_9|NC_007778.1_1221671_1225136_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type
GCF_000013365.1_ASM1336v1	NC_007778	Rhodopseudomonas palustris HaA2, complete genome	4	3183257-3183364	4	CRISPRCasFinder	no		DEDDh,csa3,cas3	Orphan	CTGGCCGGTCGCAGTCGCGTTCGA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3	NA,NA|47aa|down_7|NC_007778.1_3193614_3193755_-,NA|163aa|down_8|NC_007778.1_3193705_3194194_-	NA|504aa|up_9|NC_007778.1_3171343_3172855_-	PRK12472, PRK12472, hypothetical protein; Provisional	NA|410aa|up_8|NC_007778.1_3173038_3174268_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|288aa|up_7|NC_007778.1_3174267_3175131_-	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	NA|290aa|up_6|NC_007778.1_3175127_3175997_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|109aa|up_5|NC_007778.1_3176027_3176354_-	pfam07978, NIPSNAP, NIPSNAP	NA|311aa|up_4|NC_007778.1_3177644_3178577_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|106aa|up_3|NC_007778.1_3178705_3179023_+	cd14742, PAAR_RHS, proline-alanine-alanine-arginine (PAAR) domain, also containing C-terminal Rearrangement hotspot (Rhs) extensions	NA|544aa|up_2|NC_007778.1_3179029_3180661_-	PRK05380, pyrG, CTP synthetase; Validated	NA|131aa|up_1|NC_007778.1_3180827_3181220_-	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|214aa|up_0|NC_007778.1_3181529_3182171_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|379aa|down_0|NC_007778.1_3184223_3185360_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|258aa|down_1|NC_007778.1_3185513_3186287_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|634aa|down_2|NC_007778.1_3186539_3188441_+	pfam13624, SurA_N_3, SurA N-terminal domain	NA|339aa|down_3|NC_007778.1_3188478_3189495_+	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|266aa|down_4|NC_007778.1_3189640_3190438_+	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|174aa|down_5|NC_007778.1_3190448_3190970_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|857aa|down_6|NC_007778.1_3191008_3193579_+	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|47aa|down_7|NC_007778.1_3193614_3193755_-	NA	NA|163aa|down_8|NC_007778.1_3193705_3194194_-	NA	NA|168aa|down_9|NC_007778.1_3194450_3194954_+	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
