assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000013345.1_ASM1334v1	NC_007777	Frankia casuarinae, complete sequence	1	32161-34505	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	Type I-E	GTCGTCCCCGCACGCGCGGGGATCTTCC,GTCGTCCCCGCACGCGCGGGGATCTTCC,GTCGTCCCCGCACGCGCGGGGATCTTCC	28,28,28	0	0	NA	NA	NA:NA:NA	38,38,38	38	TypeI-E	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	NA,NA|262aa|down_8|NC_007777.1_45031_45817_-,NA|139aa|down_9|NC_007777.1_45886_46303_-	NA|228aa|up_9|NC_007777.1_17126_17810_-	PRK00150, def, peptide deformylase; Reviewed	NA|663aa|up_8|NC_007777.1_18666_20655_+	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	cas3|951aa|up_7|NC_007777.1_22463_25316_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|545aa|up_6|NC_007777.1_25696_27331_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|207aa|up_5|NC_007777.1_27357_27978_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|385aa|up_4|NC_007777.1_28056_29211_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|277aa|up_3|NC_007777.1_29207_30038_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|276aa|up_2|NC_007777.1_30045_30873_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|331aa|up_1|NC_007777.1_30874_31867_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|93aa|up_0|NC_007777.1_31863_32142_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|143aa|down_0|NC_007777.1_34524_34953_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|403aa|down_1|NC_007777.1_35870_37079_-	pfam03583, LIP, Secretory lipase	NA|269aa|down_2|NC_007777.1_37684_38491_+	PRK10847, PRK10847, DedA family protein	NA|113aa|down_3|NC_007777.1_38910_39249_-	smart00938, P-II, Nitrogen regulatory protein P-II	NA|181aa|down_4|NC_007777.1_39395_39938_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|648aa|down_5|NC_007777.1_39978_41922_-	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|501aa|down_6|NC_007777.1_42110_43613_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|459aa|down_7|NC_007777.1_43652_45029_-	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|262aa|down_8|NC_007777.1_45031_45817_-	NA	NA|139aa|down_9|NC_007777.1_45886_46303_-	NA
GCF_000013345.1_ASM1334v1	NC_007777	Frankia casuarinae, complete sequence	2	382720-382806	2	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	Orphan	CCGACGCCACCCGAGCCCTCGCCG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	NA|65aa|up_5|NC_007777.1_376204_376399_+,NA|140aa|up_4|NC_007777.1_376580_377000_+,NA|202aa|up_2|NC_007777.1_379819_380425_-,NA|83aa|down_0|NC_007777.1_382913_383162_+,NA|89aa|down_8|NC_007777.1_391005_391272_+,NA|84aa|down_9|NC_007777.1_391281_391533_+	NA|461aa|up_9|NC_007777.1_369430_370813_-	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation	NA|796aa|up_8|NC_007777.1_371214_373602_-	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|535aa|up_7|NC_007777.1_373643_375248_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|252aa|up_6|NC_007777.1_375328_376084_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|65aa|up_5|NC_007777.1_376204_376399_+	NA	NA|140aa|up_4|NC_007777.1_376580_377000_+	NA	NA|777aa|up_3|NC_007777.1_377112_379443_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|202aa|up_2|NC_007777.1_379819_380425_-	NA	NA|269aa|up_1|NC_007777.1_380495_381302_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|417aa|up_0|NC_007777.1_381298_382549_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|83aa|down_0|NC_007777.1_382913_383162_+	NA	NA|688aa|down_1|NC_007777.1_383198_385262_-	pfam13531, SBP_bac_11, Bacterial extracellular solute-binding protein	NA|243aa|down_2|NC_007777.1_385456_386185_-	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function	NA|139aa|down_3|NC_007777.1_386623_387040_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|358aa|down_4|NC_007777.1_387512_388586_+	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase	NA|292aa|down_5|NC_007777.1_388582_389458_+	COG2129, COG2129, Predicted phosphoesterases, related to the Icc protein [General function prediction only]	NA|299aa|down_6|NC_007777.1_389472_390369_-	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes	NA|143aa|down_7|NC_007777.1_390495_390924_+	pfam11387, DUF2795, Protein of unknown function (DUF2795)	NA|89aa|down_8|NC_007777.1_391005_391272_+	NA	NA|84aa|down_9|NC_007777.1_391281_391533_+	NA
GCF_000013345.1_ASM1334v1	NC_007777	Frankia casuarinae, complete sequence	3	702503-702636	3	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	Orphan	ACGGCGCCTTCGGCGCAGTGTGGGGGCCCCTGGCATCGGGC	41	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	NA,NA|108aa|down_5|NC_007777.1_707721_708045_-	NA|135aa|up_9|NC_007777.1_692050_692455_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|210aa|up_8|NC_007777.1_692550_693180_+	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|350aa|up_7|NC_007777.1_693355_694405_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|207aa|up_6|NC_007777.1_694537_695158_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|277aa|up_5|NC_007777.1_695366_696197_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|490aa|up_4|NC_007777.1_696237_697707_-	PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	NA|148aa|up_3|NC_007777.1_697992_698436_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|136aa|up_2|NC_007777.1_698529_698937_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|456aa|up_1|NC_007777.1_699046_700414_+	PRK14318, glmM, phosphoglucosamine mutase; Provisional	NA|641aa|up_0|NC_007777.1_700551_702474_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|187aa|down_0|NC_007777.1_702672_703233_-	COG4715, COG4715, Uncharacterized conserved protein [Function unknown]	NA|299aa|down_1|NC_007777.1_703390_704287_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|119aa|down_2|NC_007777.1_704465_704822_+	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|535aa|down_3|NC_007777.1_704903_706508_+	cd01171, YXKO-related, B	NA|385aa|down_4|NC_007777.1_706512_707667_+	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|108aa|down_5|NC_007777.1_707721_708045_-	NA	NA|421aa|down_6|NC_007777.1_708437_709700_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|424aa|down_7|NC_007777.1_709860_711132_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|147aa|down_8|NC_007777.1_711161_711602_+	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE	NA|258aa|down_9|NC_007777.1_711705_712479_+	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ
GCF_000013345.1_ASM1334v1	NC_007777	Frankia casuarinae, complete sequence	4	1713659-1713766	4	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	Orphan	CCTGCGCCGGCAGCTCGACGAGGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	NA,NA|215aa|down_4|NC_007777.1_1721321_1721966_+,NA|248aa|down_7|NC_007777.1_1724067_1724811_+,NA|127aa|down_9|NC_007777.1_1725821_1726202_+	NA|472aa|up_9|NC_007777.1_1702378_1703794_+	PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional	NA|531aa|up_8|NC_007777.1_1703796_1705389_+	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW	NA|377aa|up_7|NC_007777.1_1705392_1706523_+	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional	NA|150aa|up_6|NC_007777.1_1706580_1707030_-	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase	NA|503aa|up_5|NC_007777.1_1707363_1708872_-	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|497aa|up_4|NC_007777.1_1709307_1710798_+	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|228aa|up_3|NC_007777.1_1710821_1711505_+	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase	NA|341aa|up_2|NC_007777.1_1711519_1712542_+	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins	NA|181aa|up_1|NC_007777.1_1712552_1713095_+	pfam04472, SepF, Cell division protein SepF	NA|85aa|up_0|NC_007777.1_1713169_1713424_+	pfam02325, YGGT, YGGT family	NA|1070aa|down_0|NC_007777.1_1714743_1717953_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|202aa|down_1|NC_007777.1_1718524_1719130_+	PRK14764, PRK14764, lipoprotein signal peptidase; Provisional	NA|314aa|down_2|NC_007777.1_1719110_1720052_+	TIGR00005, Ribosomal_large_subunit_pseudouridine_synthase_D, pseudouridine synthase, RluA family	NA|361aa|down_3|NC_007777.1_1720048_1721131_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|215aa|down_4|NC_007777.1_1721321_1721966_+	NA	NA|321aa|down_5|NC_007777.1_1722015_1722978_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|298aa|down_6|NC_007777.1_1722991_1723885_+	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|248aa|down_7|NC_007777.1_1724067_1724811_+	NA	NA|225aa|down_8|NC_007777.1_1724872_1725547_-	pfam02190, LON_substr_bdg, ATP-dependent protease La (LON) substrate-binding domain	NA|127aa|down_9|NC_007777.1_1725821_1726202_+	NA
GCF_000013345.1_ASM1334v1	NC_007777	Frankia casuarinae, complete sequence	5	2634572-2634683	5	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	Orphan	CCGAGCTGGCCGGCTAGACCGGGCCGGT	28	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	NA,NA|116aa|down_5|NC_007777.1_2642880_2643228_-,NA|133aa|down_6|NC_007777.1_2643465_2643864_+,NA|84aa|down_8|NC_007777.1_2644415_2644667_-	NA|915aa|up_9|NC_007777.1_2620629_2623374_+	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|384aa|up_8|NC_007777.1_2623436_2624588_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|223aa|up_7|NC_007777.1_2624633_2625302_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|389aa|up_6|NC_007777.1_2625360_2626527_-	pfam01757, Acyl_transf_3, Acyltransferase family	NA|321aa|up_5|NC_007777.1_2627117_2628080_+	PRK09906, PRK09906, DNA-binding transcriptional regulator HcaR; Provisional	NA|274aa|up_4|NC_007777.1_2628356_2629178_+	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain	NA|421aa|up_3|NC_007777.1_2629443_2630706_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|339aa|up_2|NC_007777.1_2630705_2631722_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|252aa|up_1|NC_007777.1_2631780_2632536_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|448aa|up_0|NC_007777.1_2632543_2633887_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|585aa|down_0|NC_007777.1_2634953_2636708_+	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown]	NA|225aa|down_1|NC_007777.1_2636769_2637444_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|289aa|down_2|NC_007777.1_2637634_2638501_-	pfam04672, Methyltransf_19, S-adenosyl methyltransferase	NA|849aa|down_3|NC_007777.1_2638579_2641126_-	pfam12029, DUF3516, Domain of unknown function (DUF3516)	NA|368aa|down_4|NC_007777.1_2641586_2642690_+	cd03505, Delta9-FADS-like, The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi	NA|116aa|down_5|NC_007777.1_2642880_2643228_-	NA	NA|133aa|down_6|NC_007777.1_2643465_2643864_+	NA	NA|187aa|down_7|NC_007777.1_2643815_2644376_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|84aa|down_8|NC_007777.1_2644415_2644667_-	NA	NA|83aa|down_9|NC_007777.1_2644969_2645218_-	pfam04149, DUF397, Domain of unknown function (DUF397)
GCF_000013345.1_ASM1334v1	NC_007777	Frankia casuarinae, complete sequence	6	2690382-2690564	2	PILER-CR	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	Orphan	GCCTCGGCCTCGACGCGGGCCGCCTCGGCGGCG	33	0	0	NA	NA	NA	2	2	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	NA|59aa|up_8|NC_007777.1_2684220_2684397_-,NA|60aa|up_7|NC_007777.1_2684587_2684767_+,NA|310aa|down_1|NC_007777.1_2693117_2694047_-,NA|148aa|down_5|NC_007777.1_2699903_2700347_+	NA|207aa|up_9|NC_007777.1_2683527_2684148_+	cd07302, CHD, cyclase homology domain	NA|59aa|up_8|NC_007777.1_2684220_2684397_-	NA	NA|60aa|up_7|NC_007777.1_2684587_2684767_+	NA	NA|350aa|up_6|NC_007777.1_2684908_2685958_-	cd00799, INT_Cre_C, C-terminal catalytic domain of Cre recombinase (also called integrase)	NA|95aa|up_5|NC_007777.1_2686049_2686334_-	PRK00575, tatA, Sec-independent protein translocase subunit TatA	NA|93aa|up_4|NC_007777.1_2686687_2686966_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|228aa|up_3|NC_007777.1_2687063_2687747_+	pfam10783, DUF2599, Protein of unknown function (DUF2599)	NA|194aa|up_2|NC_007777.1_2687824_2688406_-	TIGR03086, TIGR03086, TIGR03086 family protein	NA|199aa|up_1|NC_007777.1_2688412_2689009_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|225aa|up_0|NC_007777.1_2689118_2689793_+	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|269aa|down_0|NC_007777.1_2691709_2692516_+	COG0685, MetF, 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]	NA|310aa|down_1|NC_007777.1_2693117_2694047_-	NA	NA|172aa|down_2|NC_007777.1_2694043_2694559_-	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain	NA|163aa|down_3|NC_007777.1_2694971_2695460_+	pfam04978, DUF664, Protein of unknown function (DUF664)	NA|175aa|down_4|NC_007777.1_2695626_2696151_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|148aa|down_5|NC_007777.1_2699903_2700347_+	NA	NA|410aa|down_6|NC_007777.1_2700552_2701782_-	cd17370, MFS_MJ1317_like, MJ1317 and similar transporters of the Major Facilitator Superfamily	NA|130aa|down_7|NC_007777.1_2701778_2702168_-	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|116aa|down_8|NC_007777.1_2702164_2702512_-	pfam02641, DUF190, Uncharacterized ACR, COG1993	NA|174aa|down_9|NC_007777.1_2702508_2703030_-	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)
GCF_000013345.1_ASM1334v1	NC_007777	Frankia casuarinae, complete sequence	7	2855608-2855692	6	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	Orphan	GTAGGTCAGCGTGACGTACCGGTCC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	NA|53aa|up_7|NC_007777.1_2836711_2836870_+,NA	NA|148aa|up_9|NC_007777.1_2835230_2835674_+	pfam03496, ADPrib_exo_Tox, ADP-ribosyltransferase exoenzyme	NA|248aa|up_8|NC_007777.1_2835958_2836702_+	pfam03496, ADPrib_exo_Tox, ADP-ribosyltransferase exoenzyme	NA|53aa|up_7|NC_007777.1_2836711_2836870_+	NA	NA|241aa|up_6|NC_007777.1_2837983_2838706_+	TIGR01547, Uncharacterized_protein_YqaT, phage terminase, large subunit, PBSX family	NA|222aa|up_5|NC_007777.1_2838804_2839470_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|504aa|up_4|NC_007777.1_2839466_2840978_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|556aa|up_3|NC_007777.1_2841343_2843011_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|228aa|up_2|NC_007777.1_2843122_2843806_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|439aa|up_1|NC_007777.1_2843858_2845175_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|280aa|up_0|NC_007777.1_2845257_2846097_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|75aa|down_0|NC_007777.1_2859025_2859250_-	pfam03621, MbtH, MbtH-like protein	NA|414aa|down_1|NC_007777.1_2859541_2860783_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|283aa|down_2|NC_007777.1_2860866_2861715_-	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|356aa|down_3|NC_007777.1_2861769_2862837_-	TIGR01263, 4-hydroxyphenylpyruvate_dioxygenase, 4-hydroxyphenylpyruvate dioxygenase	NA|266aa|down_4|NC_007777.1_2862973_2863771_-	PRK06494, PRK06494, enoyl-CoA hydratase; Provisional	NA|433aa|down_5|NC_007777.1_2863767_2865066_-	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|214aa|down_6|NC_007777.1_2865062_2865704_-	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|367aa|down_7|NC_007777.1_2865697_2866798_-	cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs	NA|4490aa|down_8|NC_007777.1_2866868_2880338_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|2606aa|down_9|NC_007777.1_2880334_2888152_-	PRK12467, PRK12467, peptide synthase; Provisional
GCF_000013345.1_ASM1334v1	NC_007777	Frankia casuarinae, complete sequence	8	3232705-3232791	7	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	Orphan	CGCCGGGCGGATGGTCGCGCCGGGCGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	NA|212aa|up_5|NC_007777.1_3225809_3226445_-,NA|761aa|up_4|NC_007777.1_3226441_3228724_-,NA|375aa|up_3|NC_007777.1_3228716_3229841_-,NA|135aa|up_1|NC_007777.1_3230988_3231393_-,NA|288aa|up_0|NC_007777.1_3231648_3232512_-,NA|41aa|down_3|NC_007777.1_3238639_3238762_-,NA|184aa|down_6|NC_007777.1_3240931_3241483_-	NA|91aa|up_9|NC_007777.1_3222649_3222922_+	pfam01527, HTH_Tnp_1, Transposase	NA|105aa|up_8|NC_007777.1_3222961_3223276_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|419aa|up_7|NC_007777.1_3223275_3224532_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|143aa|up_6|NC_007777.1_3224903_3225332_-	PRK13410, PRK13410, molecular chaperone DnaK; Provisional	NA|212aa|up_5|NC_007777.1_3225809_3226445_-	NA	NA|761aa|up_4|NC_007777.1_3226441_3228724_-	NA	NA|375aa|up_3|NC_007777.1_3228716_3229841_-	NA	NA|226aa|up_2|NC_007777.1_3230034_3230712_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|135aa|up_1|NC_007777.1_3230988_3231393_-	NA	NA|288aa|up_0|NC_007777.1_3231648_3232512_-	NA	NA|644aa|down_0|NC_007777.1_3233965_3235897_-	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX	NA|268aa|down_1|NC_007777.1_3236919_3237723_-	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|211aa|down_2|NC_007777.1_3237976_3238609_-	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein	NA|41aa|down_3|NC_007777.1_3238639_3238762_-	NA	NA|314aa|down_4|NC_007777.1_3239400_3240342_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|180aa|down_5|NC_007777.1_3240331_3240871_+	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|184aa|down_6|NC_007777.1_3240931_3241483_-	NA	NA|123aa|down_7|NC_007777.1_3241987_3242356_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|499aa|down_8|NC_007777.1_3242444_3243941_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|141aa|down_9|NC_007777.1_3244402_3244825_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein
GCF_000013345.1_ASM1334v1	NC_007777	Frankia casuarinae, complete sequence	9	3904716-3905896	8,2,3	CRISPRCasFinder,CRT,PILER-CR	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	Orphan	GTTGTGATCCTCGCCGAGGGCGATCCCTCGGCGCTGC,GTTGTGATCCTCGCCGAGGGCGATCCCTCGGCGCTGC,GTTGTGATCCTCGCCGAGGGCGATCCCTCGGCGCTGC	37,37,37	0	0	NA	NA	NA:NA:NA	15,15,14	15	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	NA|30aa|up_8|NC_007777.1_3895608_3895698_-,NA|570aa|down_0|NC_007777.1_3906198_3907908_-,NA|593aa|down_1|NC_007777.1_3908607_3910386_-,NA|123aa|down_2|NC_007777.1_3910382_3910751_-,NA|514aa|down_4|NC_007777.1_3911745_3913287_-,NA|333aa|down_5|NC_007777.1_3913298_3914297_-,NA|297aa|down_7|NC_007777.1_3916362_3917253_-,NA|64aa|down_8|NC_007777.1_3917218_3917410_-	NA|554aa|up_9|NC_007777.1_3893946_3895608_-	PRK05482, PRK05482, potassium-transporting ATPase subunit A; Provisional	NA|30aa|up_8|NC_007777.1_3895608_3895698_-	NA	NA|251aa|up_7|NC_007777.1_3896184_3896937_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|284aa|up_6|NC_007777.1_3897033_3897885_-	pfam01904, DUF72, Protein of unknown function DUF72	NA|79aa|up_5|NC_007777.1_3898923_3899160_+	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	NA|136aa|up_4|NC_007777.1_3899156_3899564_+	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|120aa|up_3|NC_007777.1_3899961_3900321_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|132aa|up_2|NC_007777.1_3900464_3900860_+	pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase	NA|303aa|up_1|NC_007777.1_3900856_3901765_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|479aa|up_0|NC_007777.1_3902287_3903724_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|570aa|down_0|NC_007777.1_3906198_3907908_-	NA	NA|593aa|down_1|NC_007777.1_3908607_3910386_-	NA	NA|123aa|down_2|NC_007777.1_3910382_3910751_-	NA	NA|290aa|down_3|NC_007777.1_3910747_3911617_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|514aa|down_4|NC_007777.1_3911745_3913287_-	NA	NA|333aa|down_5|NC_007777.1_3913298_3914297_-	NA	NA|680aa|down_6|NC_007777.1_3914293_3916333_-	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG	NA|297aa|down_7|NC_007777.1_3916362_3917253_-	NA	NA|64aa|down_8|NC_007777.1_3917218_3917410_-	NA	NA|390aa|down_9|NC_007777.1_3917674_3918844_+	TIGR01391, DNA_primase, DNA primase, catalytic core
GCF_000013345.1_ASM1334v1	NC_007777	Frankia casuarinae, complete sequence	10	3971225-3972714	4,9,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	Type I-U, Type I-U?,Type I-C	GCAGCGCCGGGCGTCCGCGCCCGGCGAGGTTCCCAAC,GCAGCGCCGGGCGTCCGCGCCCGGCGAGGTTCCCAAC,GCAGCGCCGGGCGTCCGCGCCCGGCGAGGTTCCCAAC	37,37,37	1	1	3971695-3971729	NC_007777.1_2885455-2885421	NA:NA:NA	20,20,20	20	TypeI-U,TypeI-U?,TypeI-C	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	NA,NA|68aa|down_2|NC_007777.1_3979843_3980047_+,NA|667aa|down_4|NC_007777.1_3982687_3984688_+,NA|306aa|down_6|NC_007777.1_3989593_3990511_-	NA|246aa|up_9|NC_007777.1_3960903_3961641_+	pfam10979, DUF2786, Protein of unknown function (DUF2786)	NA|61aa|up_8|NC_007777.1_3962177_3962360_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|81aa|up_7|NC_007777.1_3962522_3962765_+	TIGR03917, hypothetical_protein, Frankia-40 domain	cas3|742aa|up_6|NC_007777.1_3963363_3965589_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|222aa|up_5|NC_007777.1_3965585_3966251_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|628aa|up_4|NC_007777.1_3966250_3968134_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|296aa|up_3|NC_007777.1_3968224_3969112_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|222aa|up_2|NC_007777.1_3969108_3969774_+	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas1|345aa|up_1|NC_007777.1_3969766_3970801_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NC_007777.1_3970800_3971091_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|443aa|down_0|NC_007777.1_3973713_3975042_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|212aa|down_1|NC_007777.1_3975758_3976394_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|68aa|down_2|NC_007777.1_3979843_3980047_+	NA	NA|483aa|down_3|NC_007777.1_3980136_3981585_-	pfam06441, EHN, Epoxide hydrolase N-terminus	NA|667aa|down_4|NC_007777.1_3982687_3984688_+	NA	NA|546aa|down_5|NC_007777.1_3988031_3989669_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|306aa|down_6|NC_007777.1_3989593_3990511_-	NA	NA|434aa|down_7|NC_007777.1_3990507_3991809_-	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences	NA|424aa|down_8|NC_007777.1_3991809_3993081_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|347aa|down_9|NC_007777.1_3993077_3994118_-	cd08234, threonine_DH_like, L-threonine dehydrogenase
GCF_000013345.1_ASM1334v1	NC_007777	Frankia casuarinae, complete sequence	11	4015472-4015653	10,5	CRISPRCasFinder,PILER-CR	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	Orphan	GGCAGCGCCGGGCGTCCGCGCCCGGCGAGGTTCCCAAC,GGCAGCGCCGGGCGTCCGCGCCCGGCGAGGTTCCCAACT	38,39	0	0	NA	NA	NA:NA	2,2	2	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	NA,NA|60aa|down_1|NC_007777.1_4018014_4018194_-,NA|220aa|down_3|NC_007777.1_4019991_4020651_+,NA|91aa|down_6|NC_007777.1_4023285_4023558_+,NA|222aa|down_7|NC_007777.1_4023643_4024309_+	NA|155aa|up_9|NC_007777.1_4005110_4005575_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|293aa|up_8|NC_007777.1_4007694_4008573_+	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase	NA|379aa|up_7|NC_007777.1_4008609_4009746_+	pfam01702, TGT, Queuine tRNA-ribosyltransferase	NA|237aa|up_6|NC_007777.1_4009748_4010459_+	pfam06508, QueC, Queuosine biosynthesis protein QueC	NA|213aa|up_5|NC_007777.1_4010460_4011099_+	TIGR04508, queE_Cx14CxxC, 7-carboxy-7-deazaguanine synthase, Cx14CxxC type	NA|125aa|up_4|NC_007777.1_4011098_4011473_+	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase	NA|289aa|up_3|NC_007777.1_4011469_4012336_+	pfam07091, FmrO, Ribosomal RNA methyltransferase (FmrO)	NA|110aa|up_2|NC_007777.1_4012455_4012785_+	PRK13258, PRK13258, 7-cyano-7-deazaguanine reductase; Provisional	NA|242aa|up_1|NC_007777.1_4013309_4014035_-	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease	NA|282aa|up_0|NC_007777.1_4014055_4014901_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|443aa|down_0|NC_007777.1_4016652_4017981_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|60aa|down_1|NC_007777.1_4018014_4018194_-	NA	NA|381aa|down_2|NC_007777.1_4018556_4019699_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|220aa|down_3|NC_007777.1_4019991_4020651_+	NA	NA|480aa|down_4|NC_007777.1_4021129_4022569_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|109aa|down_5|NC_007777.1_4022966_4023293_+	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|91aa|down_6|NC_007777.1_4023285_4023558_+	NA	NA|222aa|down_7|NC_007777.1_4023643_4024309_+	NA	NA|143aa|down_8|NC_007777.1_4024305_4024734_+	pfam15693, Med26_C, Mediator complex subunit 26 C-terminal	NA|730aa|down_9|NC_007777.1_4025042_4027232_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins
GCF_000013345.1_ASM1334v1	NC_007777	Frankia casuarinae, complete sequence	12	4056539-4056625	11	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	Orphan	AGACCGGCAGGGTCGTCAAGACCG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	NA,NA|196aa|down_0|NC_007777.1_4057493_4058081_+,NA|236aa|down_1|NC_007777.1_4058179_4058887_+,NA|63aa|down_4|NC_007777.1_4061938_4062127_+,NA|198aa|down_7|NC_007777.1_4065879_4066473_-,NA|190aa|down_9|NC_007777.1_4067836_4068406_+	NA|703aa|up_9|NC_007777.1_4035139_4037248_+	cd14656, Imelysin-like_EfeO, EfeO is a component of the EfeUOB operon	NA|423aa|up_8|NC_007777.1_4037244_4038513_+	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme	NA|505aa|up_7|NC_007777.1_4038702_4040217_-	pfam05787, DUF839, Bacterial protein of unknown function (DUF839)	NA|446aa|up_6|NC_007777.1_4040631_4041969_+	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	NA|342aa|up_5|NC_007777.1_4042319_4043345_-	pfam18844, baeRF_family2, Bacterial archaeo-eukaryotic release factor family 2	NA|447aa|up_4|NC_007777.1_4043701_4045042_-	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed	NA|1754aa|up_3|NC_007777.1_4045288_4050550_-	PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional	NA|375aa|up_2|NC_007777.1_4050546_4051671_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|630aa|up_1|NC_007777.1_4051667_4053557_-	pfam00498, FHA, FHA domain	NA|457aa|up_0|NC_007777.1_4053574_4054945_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|196aa|down_0|NC_007777.1_4057493_4058081_+	NA	NA|236aa|down_1|NC_007777.1_4058179_4058887_+	NA	NA|338aa|down_2|NC_007777.1_4059276_4060290_+	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|349aa|down_3|NC_007777.1_4060597_4061644_+	cd19087, AKR_AKR12A1_B1_C1, AKR12A, AKR12B,  AKR12C families of aldo-keto reductase (AKR)	NA|63aa|down_4|NC_007777.1_4061938_4062127_+	NA	NA|146aa|down_5|NC_007777.1_4062258_4062696_-	pfam04686, SsgA, Streptomyces sporulation and cell division protein, SsgA	NA|899aa|down_6|NC_007777.1_4063070_4065767_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|198aa|down_7|NC_007777.1_4065879_4066473_-	NA	NA|204aa|down_8|NC_007777.1_4066930_4067542_+	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|190aa|down_9|NC_007777.1_4067836_4068406_+	NA
GCF_000013345.1_ASM1334v1	NC_007777	Frankia casuarinae, complete sequence	13	4110195-4110283	12	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	Orphan	TCCCTCCAGGGATGATCAGCGAC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,WYL,csa3,DEDDh,RT,cas4,cas8c	NA|258aa|up_6|NC_007777.1_4095636_4096410_-,NA	NA|330aa|up_9|NC_007777.1_4092311_4093301_-	PRK05442, PRK05442, malate dehydrogenase; Provisional	NA|395aa|up_8|NC_007777.1_4093510_4094695_-	cd06341, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|157aa|up_7|NC_007777.1_4094976_4095447_-	pfam03928, Haem_degrading, Haem-degrading	NA|258aa|up_6|NC_007777.1_4095636_4096410_-	NA	NA|79aa|up_5|NC_007777.1_4096595_4096832_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|289aa|up_4|NC_007777.1_4098093_4098960_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|884aa|up_3|NC_007777.1_4099094_4101746_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|1374aa|up_2|NC_007777.1_4102262_4106384_+	PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional	NA|1057aa|up_1|NC_007777.1_4106415_4109586_+	pfam13676, TIR_2, TIR domain	NA|172aa|up_0|NC_007777.1_4109604_4110120_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|441aa|down_0|NC_007777.1_4110715_4112038_-	PRK05101, PRK05101, galactokinase; Provisional	NA|406aa|down_1|NC_007777.1_4112104_4113322_-	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase	NA|164aa|down_2|NC_007777.1_4113556_4114048_+	cd01110, HTH_SoxR, Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator	NA|240aa|down_3|NC_007777.1_4114206_4114926_+	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|419aa|down_4|NC_007777.1_4115136_4116393_+	cd06341, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|247aa|down_5|NC_007777.1_4116417_4117158_-	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter	NA|339aa|down_6|NC_007777.1_4120716_4121733_+	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|607aa|down_7|NC_007777.1_4122261_4124082_+	COG4124, ManB, Beta-mannanase [Carbohydrate transport and metabolism]	NA|69aa|down_8|NC_007777.1_4124156_4124363_-	pfam08940, DUF1918, Domain of unknown function (DUF1918)	NA|308aa|down_9|NC_007777.1_4124422_4125346_-	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase
