The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_008253	Escherichia coli 536, complete sequence	4938920	253891	298326	4938920	transposase,integrase,plate	Enterobacteria_phage(18.18%)	43	259841:259856	304280:304295
WP_000224521.1|253891_255238_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_001013428.1|255240_255765_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000433567.1|255761_257054_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_000896716.1|257058_258108_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_000863399.1|258071_259913_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
259841:259856	attL	CCTGCGCCAACAGTTT	NA	NA	NA	NA
WP_001189667.1|259918_260344_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_000111582.1|260348_261833_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_000041480.1|261855_262359_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_001142963.1|263064_263583_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_000053624.1|263803_265786_+	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	25.3	1.6e-23
WP_000571853.1|265892_266939_+	DUF2169 domain-containing protein	NA	NA	NA	NA	NA
WP_000528851.1|266931_268371_+	DUF4150 domain-containing protein	NA	NA	NA	NA	NA
WP_000513317.1|268345_268636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000227712.1|269886_270390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001298174.1|270483_270972_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_001118042.1|271242_272013_-	2-oxoglutaramate amidase	NA	NA	NA	NA	NA
WP_000532690.1|272166_272640_+	C-lysozyme inhibitor	NA	NA	NA	NA	NA
WP_000973131.1|272682_275127_-	acyl-CoA dehydrogenase FadE	NA	NA	NA	NA	NA
WP_000284050.1|275366_275945_+	D-sedoheptulose 7-phosphate isomerase	NA	A0A067XQR2	Caulobacter_phage	32.0	1.1e-14
WP_001298195.1|276149_276917_+	class II glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001225679.1|276887_277628_-	murein L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000093935.1|277939_278689_+	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	37.7	1.5e-19
WP_000006241.1|278864_279362_+|transposase	REP-associated tyrosine transposase RayT	transposase	NA	NA	NA	NA
WP_011579064.1|279444_279654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001298188.1|279681_281421_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA	NA
WP_000207578.1|281365_282151_+	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA	NA
WP_001226168.1|282221_283277_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000554758.1|283328_283622_+	type I toxin-antitoxin system antitoxin YafN	NA	NA	NA	NA	NA
WP_001263500.1|283624_284023_+	type II toxin-antitoxin system mRNA interferase toxin YafO	NA	NA	NA	NA	NA
WP_001059895.1|284032_284485_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000521561.1|284674_285814_+	RNA ligase RtcB family protein	NA	A0A222ZMP7	Mycobacterium_phage	31.8	7.7e-31
WP_000602124.1|285810_286425_+	peptide chain release factor H	NA	NA	NA	NA	NA
WP_001292999.1|286481_287939_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA	NA
WP_001291991.1|288199_288658_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000189578.1|288749_289994_+	esterase FrsA	NA	NA	NA	NA	NA
WP_000174703.1|290051_290453_+	sigma factor-binding protein Crl	NA	NA	NA	NA	NA
WP_000749895.1|290491_291547_-	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	60.6	2.2e-117
WP_001285288.1|291835_292939_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
WP_000893298.1|292950_294204_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.5	5.8e-96
WP_011579066.1|294408_295569_-|integrase	site-specific integrase	integrase	K7P7R5	Enterobacteria_phage	99.5	1.0e-227
WP_001281200.1|295882_296227_-	hypothetical protein	NA	A0A0P0ZB93	Stx2-converting_phage	99.1	5.9e-59
WP_001298025.1|296524_297547_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.4	6.0e-200
WP_001297096.1|297546_298326_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
304280:304295	attR	AAACTGTTGGCGCAGG	NA	NA	NA	NA
>prophage 2
NC_008253	Escherichia coli 536, complete sequence	4938920	1183562	1228763	4938920	portal,transposase,terminase,tRNA,tail,head,lysis,capsid	Enterobacteria_phage(50.94%)	60	NA	NA
WP_001298466.1|1183562_1184669_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000476093.1|1184722_1185184_-	phosphatase NudJ	NA	NA	NA	NA	NA
WP_001248678.1|1185193_1185847_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
WP_000444487.1|1186018_1187269_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	100.0	3.8e-23
WP_001297096.1|1188066_1188846_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_001298025.1|1188845_1189868_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.4	6.0e-200
WP_000088653.1|1190473_1190710_-	excisionase	NA	NA	NA	NA	NA
WP_000488406.1|1190849_1191089_-	DUF4222 domain-containing protein	NA	M1FPC8	Enterobacteria_phage	94.9	3.9e-38
WP_000763364.1|1191136_1191355_-	TraR/DksA family transcriptional regulator	NA	M1FQT7	Enterobacteria_phage	95.8	1.8e-34
WP_000188880.1|1191453_1191669_-	hypothetical protein	NA	A0A1I9LJM7	Stx_converting_phage	98.6	2.9e-32
WP_000548537.1|1191745_1191937_-	DUF1382 family protein	NA	A0A0P0ZC67	Stx2-converting_phage	98.4	2.1e-26
WP_000682300.1|1191909_1192092_-	DUF1317 domain-containing protein	NA	A0A0N7CHV0	Escherichia_phage	98.3	1.3e-28
WP_000186833.1|1192088_1192769_-	YqaJ viral recombinase family protein	NA	B6DZ61	Enterobacteria_phage	98.2	5.1e-131
WP_011579115.1|1192765_1193551_-	phage recombination protein Bet	NA	A0A1I9LJN0	Stx_converting_phage	99.6	3.1e-148
WP_000995491.1|1193556_1193853_-	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	99.0	3.6e-49
WP_000233576.1|1193927_1194134_-	phage encoded cell division inhibitor protein	NA	K7P6H3	Enterobacteria_phage	85.3	3.2e-28
WP_000866321.1|1194609_1194987_-	ASCH domain-containing protein	NA	Q6SE87	Lactobacillus_prophage	49.2	1.3e-30
WP_000380252.1|1194964_1196026_-	hypothetical protein	NA	Q6SE88	Lactobacillus_prophage	42.0	2.9e-64
WP_001337214.1|1196106_1196799_-	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	86.1	1.5e-109
WP_000184665.1|1196909_1197137_+	helix-turn-helix domain-containing protein	NA	Q76H55	Enterobacteria_phage	69.0	3.8e-22
WP_001182882.1|1197167_1197707_+	toxin YdaT domain-containing protein	NA	M9NZI6	Enterobacteria_phage	66.7	8.9e-62
WP_000147913.1|1197703_1198723_+	replication protein	NA	A0A0M5M7Y1	Salmonella_phage	64.7	6.1e-112
WP_000788796.1|1198719_1199433_+	hypothetical protein	NA	G8C7U6	Escherichia_phage	83.4	9.8e-109
WP_000608370.1|1199511_1199940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000182282.1|1199936_1200314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001053041.1|1200581_1201037_+	DNA base-flipping protein YbcN	NA	I6PD71	Cronobacter_phage	66.2	7.0e-60
WP_000224917.1|1201036_1201207_+	hypothetical protein	NA	K7P7K0	Enterobacteria_phage	67.9	2.0e-12
WP_000774485.1|1201199_1201490_+	DUF1364 domain-containing protein	NA	K7PGZ6	Enterobacteria_phage	92.7	9.6e-47
WP_001099712.1|1201486_1201849_+	crossover junction endodeoxyribonuclease RusA	NA	K7PM48	Enterobacteria_phage	96.5	4.3e-60
WP_000971056.1|1201845_1201986_+	YlcG family protein	NA	K7PHH3	Enterobacteria_phage	69.8	1.1e-08
WP_001204776.1|1202071_1202455_+	antitermination protein QuuD	NA	A0A088CD47	Shigella_phage	83.3	1.5e-55
WP_000737271.1|1202643_1203726_-	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	80.1	1.6e-166
WP_000839596.1|1204314_1204530_+|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
WP_001135283.1|1204529_1205027_+	lysozyme RrrD	NA	M1FJA0	Enterobacteria_phage	96.4	2.1e-89
WP_001228695.1|1205243_1205426_+|lysis	prophage lysis lipoprotein RzoD	lysis	K7PHU6	Enterobacteria_phage	98.3	2.9e-17
WP_001298464.1|1205516_1205810_-	increased serum survival lipoprotein Iss	NA	K7PL54	Enterobacteria_phage	92.8	7.0e-45
WP_000830178.1|1206290_1206617_+	TonB family protein	NA	H6WZK5	Escherichia_phage	72.2	3.7e-39
WP_000881607.1|1206823_1207006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000867508.1|1207568_1208114_+|terminase	terminase small subunit	terminase	A0A0K2FIG2	Enterobacteria_phage	82.9	1.2e-79
WP_001027310.1|1208088_1210014_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	99.5	0.0e+00
WP_000198149.1|1210010_1210217_+	gpW family protein	NA	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
WP_011579118.1|1210213_1211815_+|portal	phage portal protein	portal	A0A0K2FJC0	Enterobacteria_phage	99.4	1.3e-310
WP_000123275.1|1211795_1213115_+	S49 family peptidase	NA	A0A2I6TC87	Escherichia_phage	97.9	1.0e-231
WP_001298472.1|1213124_1213457_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	98.2	1.4e-54
WP_000063225.1|1213512_1214538_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	97.1	6.9e-188
WP_000158869.1|1214579_1214975_+	DNA-packaging protein FI	NA	A0A2R9YJP4	Escherichia_phage	95.5	5.7e-58
WP_000752960.1|1214986_1215340_+|head,tail	head-tail joining protein	head,tail	A0A2R9YJJ5	Escherichia_phage	99.1	7.6e-62
WP_000985116.1|1215351_1215930_+|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	97.9	7.8e-80
WP_000683140.1|1215926_1216322_+|tail	tail protein	tail	A0A2R9YJI2	Escherichia_phage	97.7	4.2e-69
WP_001298481.1|1216329_1217070_+|tail	phage tail protein	tail	A0A0K2FJ05	Enterobacteria_phage	96.7	2.6e-128
WP_000479168.1|1217085_1217508_+|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	95.0	1.2e-69
WP_000459484.1|1217489_1217924_+|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	97.5	5.0e-63
WP_000840199.1|1217916_1220484_+|tail	phage tail tape measure protein	tail	A0A2R9YJM8	Escherichia_phage	93.5	0.0e+00
WP_000847330.1|1220480_1220810_+|tail	phage tail protein	tail	A0A2R9YJM0	Escherichia_phage	100.0	1.6e-58
WP_001152619.1|1220809_1221508_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	99.1	7.3e-133
WP_001519691.1|1221513_1222257_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	97.6	2.0e-149
WP_000090917.1|1222193_1222826_+|tail	tail assembly protein	tail	A0A2R9YJH6	Escherichia_phage	100.0	5.9e-97
WP_000515728.1|1222886_1226369_+	host specificity protein J	NA	A0A291AWT4	Escherichia_phage	90.2	0.0e+00
WP_001519693.1|1226427_1228488_+|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0E3M194	Enterobacteria_phage	53.5	3.3e-125
WP_000654175.1|1228484_1228763_+	hypothetical protein	NA	A0A0E3JSQ1	Enterobacteria_phage	57.6	9.9e-25
>prophage 3
NC_008253	Escherichia coli 536, complete sequence	4938920	2849945	2857085	4938920		Escherichia_phage(83.33%)	6	NA	NA
WP_000106696.1|2849945_2852507_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.8	1.6e-31
WP_001141304.1|2852612_2853269_+	protein-serine/threonine phosphatase	NA	A0A077SLQ6	Escherichia_phage	46.6	8.6e-51
WP_024174328.1|2853319_2854087_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.3	1.6e-69
WP_000847997.1|2854282_2855191_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.5	1.5e-117
WP_000590411.1|2855187_2856450_+	3-oxo-tetronate kinase	NA	A0A077SLJ7	Escherichia_phage	61.4	2.2e-135
WP_001279002.1|2856446_2857085_+	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	3.7e-83
>prophage 4
NC_008253	Escherichia coli 536, complete sequence	4938920	3948172	4014815	4938920	transposase,integrase	Escherichia_phage(26.67%)	52	3943565:3943579	4020149:4020163
3943565:3943579	attL	AGCAGAATAATTTCA	NA	NA	NA	NA
WP_001218923.1|3948172_3949354_+|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	69.2	7.4e-162
WP_000869865.1|3949967_3950912_+	DNA cytosine methyltransferase	NA	A7XXH6	Thermus_virus	39.9	1.3e-60
WP_000869867.1|3950908_3951841_+	DNA cytosine methyltransferase	NA	A7XXH6	Thermus_virus	38.7	5.9e-53
WP_000286814.1|3951904_3953161_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_011579236.1|3954834_3955068_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001297096.1|3955800_3956580_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_011579238.1|3956579_3957602_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.1	2.3e-199
WP_021554776.1|3958380_3958881_-	HTH-type transcriptional regulator PapX	NA	NA	NA	NA	NA
WP_000935974.1|3959406_3959613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000821052.1|3960708_3961788_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_011579244.1|3961784_3964319_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_000943621.1|3964326_3965052_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA	NA
WP_000695740.1|3965109_3965661_-	fimbrial protein F17	NA	NA	NA	NA	NA
WP_001519150.1|3966232_3966631_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001131383.1|3966657_3967875_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_000680149.1|3967925_3968474_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_001111227.1|3968643_3969285_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011579253.1|3970732_3972415_+	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
WP_001126807.1|3973971_3974538_+	inovirus-type Gp2 protein	NA	NA	NA	NA	NA
WP_000991574.1|3974784_3975357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000958492.1|3975425_3975659_+	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
WP_000832724.1|3975655_3975814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114311086.1|3977410_3978579_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	91.8	1.0e-171
WP_021556221.1|3979616_3980387_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000738260.1|3980638_3981229_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_001270429.1|3981284_3981986_+	molecular chaperone	NA	NA	NA	NA	NA
WP_000989515.1|3981966_3982398_+	molecular chaperone	NA	NA	NA	NA	NA
WP_001046493.1|3982470_3984978_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_011579264.1|3984965_3985418_+	molecular chaperone	NA	NA	NA	NA	NA
WP_011579265.1|3985407_3985956_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_000910077.1|3985975_3987241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021538799.1|3987308_3987473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011579266.1|3987474_3988671_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_024174340.1|3988996_3989401_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011579270.1|3989621_3990458_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000979296.1|3990454_3991309_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_000830501.1|3991352_3992231_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_021538796.1|3992553_3992775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001534651.1|3993045_3993558_+	alpha-hemolysin-activating lysine-acyltransferase HlyC	NA	NA	NA	NA	NA
WP_001142372.1|3993569_3996644_+	RTX toxin hemolysin HlyA	NA	NA	NA	NA	NA
WP_000376544.1|3996714_3998838_+	type I secretion system permease/ATPase	NA	W8CYL7	Bacillus_phage	29.7	8.4e-47
WP_000860470.1|3998856_4000293_+	alpha-hemolysin T1SS ABC transporter subunit HlyD	NA	NA	NA	NA	NA
WP_000273361.1|4000590_4001511_+	urea transporter	NA	NA	NA	NA	NA
WP_000199856.1|4001752_4002985_+	phosphoadenosine phosphosulfate reductase	NA	A0A068F1U8	Mycobacterium_phage	34.0	8.3e-63
WP_000502866.1|4002969_4003614_+	ParB N-terminal domain-containing protein	NA	A0A0F7L444	uncultured_marine_virus	51.0	3.7e-54
WP_000659219.1|4005142_4005958_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_021538786.1|4006488_4006659_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	58.9	1.8e-13
WP_011579276.1|4008031_4009264_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	32.1	1.0e-28
WP_001298025.1|4011115_4012138_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.4	6.0e-200
WP_001297096.1|4012137_4012917_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_000612581.1|4014159_4014429_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	98.9	3.4e-46
WP_001282150.1|4014425_4014815_-|transposase	transposase	transposase	B6DZU5	Stx2-converting_phage	98.4	1.7e-67
4020149:4020163	attR	TGAAATTATTCTGCT	NA	NA	NA	NA
