The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_008358	Hyphomonas neptunium ATCC 15444, complete sequence	3705021	532985	541944	3705021	protease,transposase	Burkholderia_virus(16.67%)	6	NA	NA
WP_148205789.1|532985_534220_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	67.4	2.2e-103
WP_011645570.1|534232_535009_-	Abi family protein	NA	A0A059NT88	Lactococcus_phage	25.0	1.6e-11
WP_011645571.1|535326_537174_+	DNA helicase RecQ	NA	F2NZ48	Diadromus_pulchellus_ascovirus	43.4	1.5e-76
WP_011645572.1|537384_537987_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	42.4	1.5e-33
WP_011645573.1|538065_539697_+	response regulator	NA	Q8QKV7	Ectocarpus_siliculosus_virus	29.7	3.1e-33
WP_011645574.1|539706_541944_-	patatin-like phospholipase domain-containing protein	NA	A0A141ZNL4	Faustovirus	24.4	4.4e-06
>prophage 2
NC_008358	Hyphomonas neptunium ATCC 15444, complete sequence	3705021	798389	807446	3705021		Synechococcus_phage(28.57%)	9	NA	NA
WP_011645814.1|798389_799571_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	49.6	3.8e-97
WP_193334339.1|799593_800484_-	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	39.5	1.0e-06
WP_011645816.1|800470_801880_-	adenosylhomocysteinase	NA	S4W1G4	Pandoravirus	33.0	7.8e-49
WP_011645817.1|801992_802868_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	52.1	3.7e-81
WP_035590300.1|802979_804056_-	dTDP-glucose 4,6-dehydratase	NA	K7QJG5	Escherichia_phage	51.0	6.2e-99
WP_156950301.1|804077_804236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160162603.1|804664_805132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160162604.1|805408_806005_+	glycosyltransferase	NA	A0A140G6B3	Arthrobacter_phage	28.9	6.5e-05
WP_011645821.1|806468_807446_+	GDP-mannose 4,6-dehydratase	NA	A0A1D8KUT0	Synechococcus_phage	53.6	8.8e-92
>prophage 3
NC_008358	Hyphomonas neptunium ATCC 15444, complete sequence	3705021	1995199	2003211	3705021	tRNA	uncultured_Mediterranean_phage(100.0%)	8	NA	NA
WP_011646926.1|1995199_1996189_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	42.5	4.5e-51
WP_011646927.1|1996207_1997815_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_011646928.1|1997851_1998226_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	43.6	5.3e-05
WP_011646929.1|1998331_1998991_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	39.8	3.4e-23
WP_011646930.1|1998978_1999740_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	38.0	9.1e-36
WP_011646931.1|1999779_2001078_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.1	5.1e-95
WP_035591152.1|2001152_2002322_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_035591206.1|2002419_2003211_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	41.5	2.7e-43
>prophage 4
NC_008358	Hyphomonas neptunium ATCC 15444, complete sequence	3705021	2130087	2136652	3705021		Staphylococcus_phage(28.57%)	8	NA	NA
WP_011647052.1|2130087_2130516_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	37.9	1.4e-14
WP_011647053.1|2130517_2131645_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	35.1	2.5e-50
WP_011647054.1|2131648_2132269_-	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	36.2	4.3e-20
WP_011647055.1|2132287_2132941_-	RibD family protein	NA	A0A2I2L4R9	Orpheovirus	27.6	1.2e-12
WP_011647056.1|2132937_2133417_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_011647057.1|2133423_2134731_-	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	53.8	4.3e-102
WP_035592517.1|2134949_2135348_+	MucR family transcriptional regulator	NA	A0A1P8VVG0	Erythrobacter_phage	49.2	3.0e-22
WP_011647059.1|2135434_2136652_-	5-aminolevulinate synthase	NA	D2TEZ5	Emiliania_huxleyi_virus	31.1	2.0e-40
