assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	1	127667-127909	1,1	CRISPRCasFinder,PILER-CR	no	cas3	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Unclear	GGATCATCCCCGCGTGCGCGGGGAGCACA,GGATCATCCCCGCGTGCGCGGGGAGCACA	29,29	0	0	NA	NA	I-E:I-E	3,2	3	Unclear	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA|140aa|up_9|NC_007333.1_116629_117049_-,NA|204aa|up_6|NC_007333.1_119934_120546_+,NA|119aa|up_5|NC_007333.1_120567_120924_+,NA|57aa|up_1|NC_007333.1_125128_125299_+,NA	NA|140aa|up_9|NC_007333.1_116629_117049_-	NA	NA|268aa|up_8|NC_007333.1_117310_118114_+	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|300aa|up_7|NC_007333.1_118102_119002_-	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|204aa|up_6|NC_007333.1_119934_120546_+	NA	NA|119aa|up_5|NC_007333.1_120567_120924_+	NA	NA|778aa|up_4|NC_007333.1_121093_123427_+	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|261aa|up_3|NC_007333.1_123471_124254_-	pfam10067, DUF2306, Predicted membrane protein (DUF2306)	NA|211aa|up_2|NC_007333.1_124387_125020_+	cd04780, HTH_MerR-like_sg5, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily	NA|57aa|up_1|NC_007333.1_125128_125299_+	NA	NA|148aa|up_0|NC_007333.1_126887_127331_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|671aa|down_0|NC_007333.1_128453_130466_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|312aa|down_1|NC_007333.1_130735_131671_-	COG1408, COG1408, Predicted phosphohydrolases [General function prediction only]	NA|151aa|down_2|NC_007333.1_131839_132292_+	pfam09424, YqeY, Yqey-like protein	NA|802aa|down_3|NC_007333.1_132369_134775_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|103aa|down_4|NC_007333.1_135241_135550_+	pfam02467, Whib, Transcription factor WhiB	NA|380aa|down_5|NC_007333.1_135821_136961_-	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|338aa|down_6|NC_007333.1_136957_137971_-	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|58aa|down_7|NC_007333.1_138089_138263_+	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|156aa|down_8|NC_007333.1_138259_138727_+	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|265aa|down_9|NC_007333.1_138911_139706_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	2	450131-450225	2	CRISPRCasFinder	no		csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Orphan	CGGGTGCGGGGCGCCCTGTTGGCCCGTCC	29	0	0	NA	NA	NA	1	1	Orphan	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA|88aa|up_8|NC_007333.1_438980_439244_-,NA|501aa|up_1|NC_007333.1_447237_448740_+,NA|108aa|down_1|NC_007333.1_455039_455363_+	NA|64aa|up_9|NC_007333.1_438581_438773_+	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|88aa|up_8|NC_007333.1_438980_439244_-	NA	NA|489aa|up_7|NC_007333.1_440027_441494_-	pfam13424, TPR_12, Tetratricopeptide repeat	NA|187aa|up_6|NC_007333.1_441838_442399_-	pfam02441, Flavoprotein, Flavoprotein	NA|361aa|up_5|NC_007333.1_442756_443839_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|307aa|up_4|NC_007333.1_443950_444871_+	cd01310, TatD_DNAse, TatD like proteins;  E	NA|373aa|up_3|NC_007333.1_444871_445990_-	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|319aa|up_2|NC_007333.1_446284_447241_+	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|501aa|up_1|NC_007333.1_447237_448740_+	NA	NA|386aa|up_0|NC_007333.1_448769_449927_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|107aa|down_0|NC_007333.1_454556_454877_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|108aa|down_1|NC_007333.1_455039_455363_+	NA	NA|288aa|down_2|NC_007333.1_455397_456261_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|616aa|down_3|NC_007333.1_456284_458132_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|308aa|down_4|NC_007333.1_458400_459324_+	PRK03188, PRK03188, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|154aa|down_5|NC_007333.1_459328_459790_-	cd01110, HTH_SoxR, Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator	NA|594aa|down_6|NC_007333.1_459941_461723_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|302aa|down_7|NC_007333.1_461804_462710_-	pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family	NA|165aa|down_8|NC_007333.1_462888_463383_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|204aa|down_9|NC_007333.1_463430_464042_-	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	3	1456445-1460502	3,1,2	CRISPRCasFinder,CRT,PILER-CR	no		csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Orphan	GTGCTCCCCACGCACGTGGGGATGGTCCG,GTGCTCCCCACGCACGTGGGGATGGTCCG,GGACCATCCCCACGTGCGTGGGGAGCAC	29,29,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	66,66,13	66	Orphan	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA|120aa|up_9|NC_007333.1_1445253_1445613_-,NA|122aa|up_7|NC_007333.1_1447240_1447606_-,NA|160aa|up_5|NC_007333.1_1449848_1450328_+,NA|69aa|up_2|NC_007333.1_1453467_1453674_+,NA	NA|120aa|up_9|NC_007333.1_1445253_1445613_-	NA	NA|309aa|up_8|NC_007333.1_1446230_1447157_+	PRK08303, PRK08303, short chain dehydrogenase; Provisional	NA|122aa|up_7|NC_007333.1_1447240_1447606_-	NA	NA|516aa|up_6|NC_007333.1_1448284_1449832_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|160aa|up_5|NC_007333.1_1449848_1450328_+	NA	NA|149aa|up_4|NC_007333.1_1451277_1451724_+	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|268aa|up_3|NC_007333.1_1451969_1452773_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|69aa|up_2|NC_007333.1_1453467_1453674_+	NA	NA|325aa|up_1|NC_007333.1_1454054_1455029_-	pfam07070, Spo0M, SpoOM protein	NA|163aa|up_0|NC_007333.1_1455518_1456007_-	pfam14325, DUF4383, Domain of unknown function (DUF4383)	NA|397aa|down_0|NC_007333.1_1461479_1462670_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|219aa|down_1|NC_007333.1_1462835_1463492_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|251aa|down_2|NC_007333.1_1463819_1464572_+	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional	NA|185aa|down_3|NC_007333.1_1464673_1465228_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|105aa|down_4|NC_007333.1_1465255_1465570_-	PRK11431, PRK11431, quaternary ammonium compound efflux SMR transporter SugE	NA|196aa|down_5|NC_007333.1_1466155_1466743_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|426aa|down_6|NC_007333.1_1467389_1468667_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|195aa|down_7|NC_007333.1_1468846_1469431_+	COG4803, COG4803, Predicted membrane protein [Function unknown]	NA|293aa|down_8|NC_007333.1_1469764_1470643_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|292aa|down_9|NC_007333.1_1470819_1471695_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	4	1529592-1530720	4,2,3	CRISPRCasFinder,CRT,PILER-CR	no	c2c9_V-U4	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Type V-U4	GGTCCATCCCCACGTGCGTGGGGAGCAT,GGTCCATCCCCACGTGCGTGGGGAGCAT,ATGCTCCCCACGCACGTGGGGATGGACC	28,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	18,18,17	18	TypeV-U4	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA,NA|161aa|down_0|NC_007333.1_1531494_1531977_+,NA|111aa|down_1|NC_007333.1_1532601_1532934_+,NA|315aa|down_2|NC_007333.1_1532984_1533929_+	NA|575aa|up_9|NC_007333.1_1517387_1519112_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|386aa|up_8|NC_007333.1_1519116_1520274_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|338aa|up_7|NC_007333.1_1520297_1521311_-	cd13547, PBP2_Fbp_like_2, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|214aa|up_6|NC_007333.1_1521887_1522529_-	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain	NA|887aa|up_5|NC_007333.1_1522585_1525246_-	TIGR02717, Uncharacterized_protein_MJ0590, acetyl coenzyme A synthetase (ADP forming), alpha domain	NA|171aa|up_4|NC_007333.1_1525480_1525993_+	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes	NA|276aa|up_3|NC_007333.1_1525989_1526817_+	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|287aa|up_2|NC_007333.1_1527144_1528005_+	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase	NA|214aa|up_1|NC_007333.1_1528018_1528660_+	cd07951, ED_3B_N_AMMECR1, The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain	NA|258aa|up_0|NC_007333.1_1528687_1529461_+	PRK14059, PRK14059, pyrimidine reductase family protein	NA|161aa|down_0|NC_007333.1_1531494_1531977_+	NA	NA|111aa|down_1|NC_007333.1_1532601_1532934_+	NA	NA|315aa|down_2|NC_007333.1_1532984_1533929_+	NA	NA|133aa|down_3|NC_007333.1_1533951_1534350_+	pfam01797, Y1_Tnp, Transposase IS200 like	c2c9_V-U4|398aa|down_4|NC_007333.1_1534350_1535544_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|193aa|down_5|NC_007333.1_1538302_1538881_+	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|98aa|down_6|NC_007333.1_1539276_1539570_+	pfam06524, NOA36, NOA36 protein	NA|476aa|down_7|NC_007333.1_1539619_1541047_+	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|220aa|down_8|NC_007333.1_1541031_1541691_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|210aa|down_9|NC_007333.1_1541715_1542345_+	pfam16316, DUF4956, Domain of unknown function (DUF4956)
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	5	1536217-1537466	3,4,5	CRT,PILER-CR,CRISPRCasFinder	no	c2c9_V-U4	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Type V-U4	CGGTCCATCCCCACGTGCGTGGGGAGCAT,ATGCTCCCCACGCACGTGGGGATGGACC,GGTCCATCCCCACGTGCGTGGGGAGCAT	29,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	20,20,20	20	TypeV-U4	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA|161aa|up_4|NC_007333.1_1531494_1531977_+,NA|111aa|up_3|NC_007333.1_1532601_1532934_+,NA|315aa|up_2|NC_007333.1_1532984_1533929_+,NA	NA|171aa|up_9|NC_007333.1_1525480_1525993_+	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes	NA|276aa|up_8|NC_007333.1_1525989_1526817_+	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|287aa|up_7|NC_007333.1_1527144_1528005_+	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase	NA|214aa|up_6|NC_007333.1_1528018_1528660_+	cd07951, ED_3B_N_AMMECR1, The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain	NA|258aa|up_5|NC_007333.1_1528687_1529461_+	PRK14059, PRK14059, pyrimidine reductase family protein	NA|161aa|up_4|NC_007333.1_1531494_1531977_+	NA	NA|111aa|up_3|NC_007333.1_1532601_1532934_+	NA	NA|315aa|up_2|NC_007333.1_1532984_1533929_+	NA	NA|133aa|up_1|NC_007333.1_1533951_1534350_+	pfam01797, Y1_Tnp, Transposase IS200 like	c2c9_V-U4|398aa|up_0|NC_007333.1_1534350_1535544_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|193aa|down_0|NC_007333.1_1538302_1538881_+	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|98aa|down_1|NC_007333.1_1539276_1539570_+	pfam06524, NOA36, NOA36 protein	NA|476aa|down_2|NC_007333.1_1539619_1541047_+	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|220aa|down_3|NC_007333.1_1541031_1541691_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|210aa|down_4|NC_007333.1_1541715_1542345_+	pfam16316, DUF4956, Domain of unknown function (DUF4956)	NA|252aa|down_5|NC_007333.1_1542341_1543097_+	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins	NA|296aa|down_6|NC_007333.1_1543342_1544230_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|278aa|down_7|NC_007333.1_1544431_1545265_-	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA|293aa|down_8|NC_007333.1_1545635_1546514_-	pfam13469, Sulfotransfer_3, Sulfotransferase family	NA|257aa|down_9|NC_007333.1_1546709_1547480_+	cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	6	1601338-1601607	6	CRISPRCasFinder	no		csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Orphan	GTGCTCCCCGCGCATGCGGGGATGGTCC	28	0	0	NA	NA	I-E	4	4	Orphan	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA|192aa|up_0|NC_007333.1_1600618_1601194_-,NA|239aa|down_0|NC_007333.1_1601779_1602496_+,NA|270aa|down_7|NC_007333.1_1609305_1610115_-,NA|93aa|down_9|NC_007333.1_1612038_1612317_+	NA|453aa|up_9|NC_007333.1_1587522_1588881_-	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase	NA|475aa|up_8|NC_007333.1_1589063_1590488_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|308aa|up_7|NC_007333.1_1590894_1591818_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|232aa|up_6|NC_007333.1_1592215_1592911_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|405aa|up_5|NC_007333.1_1593040_1594255_+	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|273aa|up_4|NC_007333.1_1594274_1595093_-	pfam02517, Abi, CAAX protease self-immunity	NA|430aa|up_3|NC_007333.1_1595675_1596965_-	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|479aa|up_2|NC_007333.1_1597181_1598618_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|410aa|up_1|NC_007333.1_1598752_1599982_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|192aa|up_0|NC_007333.1_1600618_1601194_-	NA	NA|239aa|down_0|NC_007333.1_1601779_1602496_+	NA	NA|345aa|down_1|NC_007333.1_1602679_1603714_+	COG3274, COG3274, Predicted O-acyltransferase [General function prediction only]	NA|208aa|down_2|NC_007333.1_1603733_1604357_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|133aa|down_3|NC_007333.1_1604409_1604808_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|328aa|down_4|NC_007333.1_1604807_1605791_+	cd19752, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein	NA|727aa|down_5|NC_007333.1_1606115_1608296_+	PRK13566, PRK13566, anthranilate synthase component I	NA|266aa|down_6|NC_007333.1_1608497_1609295_+	pfam02511, Thy1, Thymidylate synthase complementing protein	NA|270aa|down_7|NC_007333.1_1609305_1610115_-	NA	NA|600aa|down_8|NC_007333.1_1610242_1612042_+	COG1966, CstA, Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]	NA|93aa|down_9|NC_007333.1_1612038_1612317_+	NA
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	7	1692183-1693862	7,4,5	CRISPRCasFinder,CRT,PILER-CR	no	WYL	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Unclear	CGGTCCATCCCCACGTGCGTGGGGCTCAC,CGGTCCATCCCCACGTGCGTGGGGCTCAC,GTGAGCCCCACGCACGTGGGGATGGACC	29,29,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	27,27,25	27	Orphan	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA|736aa|up_2|NC_007333.1_1687065_1689273_+,NA	NA|113aa|up_9|NC_007333.1_1680177_1680516_-	pfam11387, DUF2795, Protein of unknown function (DUF2795)	NA|120aa|up_8|NC_007333.1_1680775_1681135_-	pfam10025, DUF2267, Uncharacterized conserved protein (DUF2267)	NA|134aa|up_7|NC_007333.1_1681209_1681611_-	pfam10025, DUF2267, Uncharacterized conserved protein (DUF2267)	NA|358aa|up_6|NC_007333.1_1681871_1682945_+	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain	NA|445aa|up_5|NC_007333.1_1683106_1684441_+	pfam04434, SWIM, SWIM zinc finger	NA|491aa|up_4|NC_007333.1_1684502_1685975_+	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|365aa|up_3|NC_007333.1_1685971_1687066_+	pfam07728, AAA_5, AAA domain (dynein-related subfamily)	NA|736aa|up_2|NC_007333.1_1687065_1689273_+	NA	NA|411aa|up_1|NC_007333.1_1689287_1690520_+	pfam05762, VWA_CoxE, VWA domain containing CoxE-like protein	NA|341aa|up_0|NC_007333.1_1690772_1691795_+	pfam05448, AXE1, Acetyl xylan esterase (AXE1)	NA|268aa|down_0|NC_007333.1_1694248_1695052_-	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|214aa|down_1|NC_007333.1_1695123_1695765_-	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal	NA|717aa|down_2|NC_007333.1_1695868_1698019_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|379aa|down_3|NC_007333.1_1698019_1699156_+	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]	NA|154aa|down_4|NC_007333.1_1699215_1699677_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|484aa|down_5|NC_007333.1_1699831_1701283_+	cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde dehydrogenase  AldA-like	NA|283aa|down_6|NC_007333.1_1701297_1702146_+	cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs	NA|717aa|down_7|NC_007333.1_1702142_1704293_+	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]	NA|263aa|down_8|NC_007333.1_1704286_1705075_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|432aa|down_9|NC_007333.1_1705356_1706652_+	cd13666, PBP2_TRAP_DctP_like_1, Substrate-binding component of an uncharacterized TRAP-type C4-dicarboxylate transport system; the type 2 periplasmic-binding protein fold
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	8	1827206-1829007	6,8,5,7	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Type III-D,Type III-C,Type III-A,Type III-B,Type I-E, Type III-B?	GTGAGCCCCACGCACGTGGGGATGGACCG,CGGTCCATCCCCACGTGCGTGGGGCTCAC,CGGTCCATCCCCACGTGCGTGGGGCTCAC,GTGAGCCCCACGCACGTGGGGATGGACCG	29,29,29,29	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B:I-E,II-B	27,29,29,27	29	TypeIII-D,TypeIII-C,TypeIII-A,TypeIII-B,TypeI-E,TypeIII-B?	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA|248aa|up_9|NC_007333.1_1812195_1812939_-,NA	NA|248aa|up_9|NC_007333.1_1812195_1812939_-	NA	NA|479aa|up_8|NC_007333.1_1813029_1814466_-	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases	NA|765aa|up_7|NC_007333.1_1814497_1816792_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|436aa|up_6|NC_007333.1_1817080_1818388_+	pfam14435, SUKH-4, SUKH-4 immunity protein	cas10|659aa|up_5|NC_007333.1_1819374_1821351_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr3gr5|383aa|up_4|NC_007333.1_1821347_1822496_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cmr4gr7|301aa|up_3|NC_007333.1_1822492_1823395_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	NA|160aa|up_2|NC_007333.1_1823387_1823867_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr6gr7|334aa|up_1|NC_007333.1_1823863_1824865_+	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr1gr7|412aa|up_0|NC_007333.1_1825224_1826460_+	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas2|110aa|down_0|NC_007333.1_1829046_1829376_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|319aa|down_1|NC_007333.1_1829375_1830332_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|233aa|down_2|NC_007333.1_1830366_1831065_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|255aa|down_3|NC_007333.1_1831061_1831826_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|374aa|down_4|NC_007333.1_1831822_1832944_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|245aa|down_5|NC_007333.1_1832940_1833675_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|522aa|down_6|NC_007333.1_1833671_1835237_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|958aa|down_7|NC_007333.1_1835905_1838779_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas6e|232aa|down_8|NC_007333.1_1839829_1840525_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|246aa|down_9|NC_007333.1_1840499_1841237_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	9	1838904-1839603	8,9,6	PILER-CR,CRISPRCasFinder,CRT	no	cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Type III-D,Type III-C,Type III-A,Type III-B,Type I-E, Type III-B?	CGGTCCATCCCCACGTGCGTGGGGCTCTC,GAGAGCCCCACGCACGTGGGGATGGACCG,GAGAGCCCCACGCACGTGGGGATGGACCG	29,29,29	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	10,11,11	11	TypeIII-D,TypeIII-C,TypeIII-A,TypeIII-B,TypeI-E,TypeIII-B?	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA,NA|63aa|down_6|NC_007333.1_1848062_1848251_-	cmr6gr7|334aa|up_9|NC_007333.1_1823863_1824865_+	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr1gr7|412aa|up_8|NC_007333.1_1825224_1826460_+	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas2|110aa|up_7|NC_007333.1_1829046_1829376_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|319aa|up_6|NC_007333.1_1829375_1830332_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|233aa|up_5|NC_007333.1_1830366_1831065_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|255aa|up_4|NC_007333.1_1831061_1831826_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|374aa|up_3|NC_007333.1_1831822_1832944_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|245aa|up_2|NC_007333.1_1832940_1833675_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|522aa|up_1|NC_007333.1_1833671_1835237_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|958aa|up_0|NC_007333.1_1835905_1838779_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas6e|232aa|down_0|NC_007333.1_1839829_1840525_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|246aa|down_1|NC_007333.1_1840499_1841237_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|398aa|down_2|NC_007333.1_1841233_1842427_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|215aa|down_3|NC_007333.1_1842423_1843068_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|556aa|down_4|NC_007333.1_1843064_1844732_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|971aa|down_5|NC_007333.1_1844721_1847634_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|63aa|down_6|NC_007333.1_1848062_1848251_-	NA	NA|205aa|down_7|NC_007333.1_1849196_1849811_-	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|386aa|down_8|NC_007333.1_1850604_1851762_-	PRK12677, PRK12677, xylose isomerase; Provisional	NA|465aa|down_9|NC_007333.1_1851790_1853185_-	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	10	2100219-2100369	10,9	CRISPRCasFinder,PILER-CR	no	cas4	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Unclear	GGACCATCCCCGCATGCGCGGGAAGCAC,GAGGACCATCCCCGCATGCGCGGGGAGCACCC	28,32	0	0	NA	NA	NA:I-E	2,2	2	Unclear	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA,NA|207aa|down_1|NC_007333.1_2101317_2101938_-,NA|59aa|down_6|NC_007333.1_2104819_2104996_+	NA|240aa|up_9|NC_007333.1_2088328_2089048_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|453aa|up_8|NC_007333.1_2089146_2090505_-	TIGR03686, pupylate_PafA, Pup--protein ligase	NA|248aa|up_7|NC_007333.1_2090575_2091319_-	TIGR03691, 20S_bact_alpha, proteasome, alpha subunit, bacterial type	NA|283aa|up_6|NC_007333.1_2091368_2092217_-	TIGR03690, 20S_bact_beta, proteasome, beta subunit, bacterial type	NA|68aa|up_5|NC_007333.1_2092391_2092595_-	pfam05639, Pup, Pup-like protein	NA|73aa|up_4|NC_007333.1_2092880_2093099_+	cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands	NA|540aa|up_3|NC_007333.1_2093166_2094786_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|434aa|up_2|NC_007333.1_2094858_2096160_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|507aa|up_1|NC_007333.1_2096356_2097877_+	pfam07905, PucR, Purine catabolism regulatory protein-like family	NA|500aa|up_0|NC_007333.1_2097904_2099404_-	TIGR03688, pupylate_PafA2, proteasome accessory factor PafA2	NA|78aa|down_0|NC_007333.1_2100899_2101133_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|207aa|down_1|NC_007333.1_2101317_2101938_-	NA	NA|71aa|down_2|NC_007333.1_2102154_2102367_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|172aa|down_3|NC_007333.1_2102382_2102898_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|64aa|down_4|NC_007333.1_2103404_2103596_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|280aa|down_5|NC_007333.1_2103607_2104447_-	pfam13560, HTH_31, Helix-turn-helix domain	NA|59aa|down_6|NC_007333.1_2104819_2104996_+	NA	NA|146aa|down_7|NC_007333.1_2105059_2105497_+	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|317aa|down_8|NC_007333.1_2105493_2106444_+	TIGR04187, conserved_hypothetical_protein, ATP-grasp ribosomal peptide maturase, SAV_5884 family	NA|90aa|down_9|NC_007333.1_2106443_2106713_+	TIGR04186, conserved_hypothetical_protein, putative ATP-grasp target RiPP
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	11	2108023-2108294	11,10,7	CRISPRCasFinder,PILER-CR,CRT	no	cas4	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Unclear	GGGACCATCCCCGCATGCGCGGGGAGCAC,GGACCATCCCCGCATGCGCGGGGAGCAC,GGACCATCCCCGCATGCGCGGGGAGCAC	29,28,28	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Unclear	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA|207aa|up_9|NC_007333.1_2101317_2101938_-,NA|59aa|up_4|NC_007333.1_2104819_2104996_+,NA|78aa|down_3|NC_007333.1_2112530_2112764_-,NA|142aa|down_5|NC_007333.1_2114448_2114874_+	NA|207aa|up_9|NC_007333.1_2101317_2101938_-	NA	NA|71aa|up_8|NC_007333.1_2102154_2102367_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|172aa|up_7|NC_007333.1_2102382_2102898_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|64aa|up_6|NC_007333.1_2103404_2103596_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|280aa|up_5|NC_007333.1_2103607_2104447_-	pfam13560, HTH_31, Helix-turn-helix domain	NA|59aa|up_4|NC_007333.1_2104819_2104996_+	NA	NA|146aa|up_3|NC_007333.1_2105059_2105497_+	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|317aa|up_2|NC_007333.1_2105493_2106444_+	TIGR04187, conserved_hypothetical_protein, ATP-grasp ribosomal peptide maturase, SAV_5884 family	NA|90aa|up_1|NC_007333.1_2106443_2106713_+	TIGR04186, conserved_hypothetical_protein, putative ATP-grasp target RiPP	NA|377aa|up_0|NC_007333.1_2106718_2107849_+	TIGR04188, conserved_hypothetical_protein, methyltransferase, ATP-grasp peptide maturase system	NA|585aa|down_0|NC_007333.1_2108677_2110432_-	TIGR03689, pup_AAA, proteasome ATPase	NA|299aa|down_1|NC_007333.1_2110623_2111520_-	COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]	NA|263aa|down_2|NC_007333.1_2111659_2112448_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|78aa|down_3|NC_007333.1_2112530_2112764_-	NA	NA|445aa|down_4|NC_007333.1_2113063_2114398_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|142aa|down_5|NC_007333.1_2114448_2114874_+	NA	NA|384aa|down_6|NC_007333.1_2115033_2116185_-	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation	cas4|281aa|down_7|NC_007333.1_2116248_2117091_+	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|237aa|down_8|NC_007333.1_2117099_2117810_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|476aa|down_9|NC_007333.1_2118007_2119435_+	pfam06738, ThrE, Putative threonine/serine exporter
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	12	2295385-2296106	12,8,11,12	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no		csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Orphan	CGGTCCATCCCCACGTGCGTGGGGCTCAC,GGTCCATCCCCACGTGCGTGGGGCTCAC,CGTGAGCCCCACGCACGTGGGGATGGACCG,GTGAGCCCCACGCACGTGGGGATGGACC	29,28,30,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B:I-E,II-B	11,11,7,7	11	Orphan	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA|109aa|up_5|NC_007333.1_2288392_2288719_+,NA|186aa|down_7|NC_007333.1_2302939_2303497_-	NA|379aa|up_9|NC_007333.1_2284460_2285597_-	PRK07238, PRK07238, bifunctional RNase H/acid phosphatase; Provisional	NA|248aa|up_8|NC_007333.1_2285619_2286363_-	COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	NA|279aa|up_7|NC_007333.1_2286409_2287246_-	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3)	NA|294aa|up_6|NC_007333.1_2287416_2288298_+	smart00518, AP2Ec, AP endonuclease family 2	NA|109aa|up_5|NC_007333.1_2288392_2288719_+	NA	NA|253aa|up_4|NC_007333.1_2288688_2289447_-	pfam01955, CbiZ, Adenosylcobinamide amidohydrolase	NA|985aa|up_3|NC_007333.1_2289979_2292934_+	pfam02011, Glyco_hydro_48, Glycosyl hydrolase family 48	NA|111aa|up_2|NC_007333.1_2293090_2293423_-	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|336aa|up_1|NC_007333.1_2293555_2294563_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|170aa|up_0|NC_007333.1_2294664_2295174_+	pfam08940, DUF1918, Domain of unknown function (DUF1918)	NA|157aa|down_0|NC_007333.1_2297102_2297573_-	cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE	NA|142aa|down_1|NC_007333.1_2297676_2298102_-	pfam11253, DUF3052, Protein of unknown function (DUF3052)	NA|143aa|down_2|NC_007333.1_2298251_2298680_-	COG0432, COG0432, Uncharacterized conserved protein [Function unknown]	NA|567aa|down_3|NC_007333.1_2298845_2300546_+	cd07389, MPP_PhoD, Bacillus subtilis PhoD and related proteins, metallophosphatase domain	NA|287aa|down_4|NC_007333.1_2300567_2301428_-	pfam02626, CT_A_B, Carboxyltransferase domain, subdomain A and B	NA|202aa|down_5|NC_007333.1_2301467_2302073_-	smart00796, AHS1, Allophanate hydrolase subunit 1	NA|255aa|down_6|NC_007333.1_2302085_2302850_-	pfam03746, LamB_YcsF, LamB/YcsF family	NA|186aa|down_7|NC_007333.1_2302939_2303497_-	NA	NA|399aa|down_8|NC_007333.1_2304066_2305263_-	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|320aa|down_9|NC_007333.1_2305451_2306411_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	13	2296197-2296469	13,13,9	PILER-CR,CRISPRCasFinder,CRT	no		csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Orphan	GTGAGCCCCACGCACGTGGGGATGGACCG,CGGTCCATCCCCACGTGCGTGGGGCTCAC,CGGTCCATCCCCACGTGCGTGGGGCTCAC	29,29,29	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	4,4,4	4	Orphan	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA|109aa|up_5|NC_007333.1_2288392_2288719_+,NA|186aa|down_7|NC_007333.1_2302939_2303497_-	NA|379aa|up_9|NC_007333.1_2284460_2285597_-	PRK07238, PRK07238, bifunctional RNase H/acid phosphatase; Provisional	NA|248aa|up_8|NC_007333.1_2285619_2286363_-	COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	NA|279aa|up_7|NC_007333.1_2286409_2287246_-	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3)	NA|294aa|up_6|NC_007333.1_2287416_2288298_+	smart00518, AP2Ec, AP endonuclease family 2	NA|109aa|up_5|NC_007333.1_2288392_2288719_+	NA	NA|253aa|up_4|NC_007333.1_2288688_2289447_-	pfam01955, CbiZ, Adenosylcobinamide amidohydrolase	NA|985aa|up_3|NC_007333.1_2289979_2292934_+	pfam02011, Glyco_hydro_48, Glycosyl hydrolase family 48	NA|111aa|up_2|NC_007333.1_2293090_2293423_-	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|336aa|up_1|NC_007333.1_2293555_2294563_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|170aa|up_0|NC_007333.1_2294664_2295174_+	pfam08940, DUF1918, Domain of unknown function (DUF1918)	NA|157aa|down_0|NC_007333.1_2297102_2297573_-	cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE	NA|142aa|down_1|NC_007333.1_2297676_2298102_-	pfam11253, DUF3052, Protein of unknown function (DUF3052)	NA|143aa|down_2|NC_007333.1_2298251_2298680_-	COG0432, COG0432, Uncharacterized conserved protein [Function unknown]	NA|567aa|down_3|NC_007333.1_2298845_2300546_+	cd07389, MPP_PhoD, Bacillus subtilis PhoD and related proteins, metallophosphatase domain	NA|287aa|down_4|NC_007333.1_2300567_2301428_-	pfam02626, CT_A_B, Carboxyltransferase domain, subdomain A and B	NA|202aa|down_5|NC_007333.1_2301467_2302073_-	smart00796, AHS1, Allophanate hydrolase subunit 1	NA|255aa|down_6|NC_007333.1_2302085_2302850_-	pfam03746, LamB_YcsF, LamB/YcsF family	NA|186aa|down_7|NC_007333.1_2302939_2303497_-	NA	NA|399aa|down_8|NC_007333.1_2304066_2305263_-	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|320aa|down_9|NC_007333.1_2305451_2306411_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	14	2671886-2671980	14	CRISPRCasFinder	no	DEDDh	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Unclear	GACCAGGCCACCATCAACCTCGG	23	0	0	NA	NA	NA	1	1	Orphan	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA|359aa|up_7|NC_007333.1_2661617_2662694_+,NA|340aa|up_6|NC_007333.1_2662754_2663774_-,NA|168aa|up_2|NC_007333.1_2667612_2668116_-,NA|204aa|up_0|NC_007333.1_2670711_2671323_+,NA	NA|427aa|up_9|NC_007333.1_2658465_2659746_+	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|346aa|up_8|NC_007333.1_2660117_2661155_-	cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor	NA|359aa|up_7|NC_007333.1_2661617_2662694_+	NA	NA|340aa|up_6|NC_007333.1_2662754_2663774_-	NA	NA|361aa|up_5|NC_007333.1_2664308_2665391_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|304aa|up_4|NC_007333.1_2665637_2666549_-	cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases	NA|269aa|up_3|NC_007333.1_2666749_2667556_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|168aa|up_2|NC_007333.1_2667612_2668116_-	NA	NA|597aa|up_1|NC_007333.1_2668757_2670548_+	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|204aa|up_0|NC_007333.1_2670711_2671323_+	NA	DEDDh|214aa|down_0|NC_007333.1_2673146_2673788_+	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|362aa|down_1|NC_007333.1_2674595_2675681_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|259aa|down_2|NC_007333.1_2675745_2676522_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|538aa|down_3|NC_007333.1_2676566_2678180_+	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|125aa|down_4|NC_007333.1_2678185_2678560_+	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]	NA|447aa|down_5|NC_007333.1_2678596_2679937_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|311aa|down_6|NC_007333.1_2679933_2680866_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|274aa|down_7|NC_007333.1_2680988_2681810_+	pfam00482, T2SSF, Type II secretion system (T2SS), protein F	NA|404aa|down_8|NC_007333.1_2681814_2683026_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|218aa|down_9|NC_007333.1_2683050_2683704_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	15	3258509-3258658	15,14	CRISPRCasFinder,PILER-CR	no		csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Orphan	GGTCCATCCCCGCATGCGCGGGGAGCAC,GGTCCATCCCCGCATGCGCGGGGAGCAC	28,28	0	0	NA	NA	I-E:I-E	2,2	2	Orphan	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA|116aa|up_9|NC_007333.1_3250001_3250349_-,NA|147aa|up_6|NC_007333.1_3252417_3252858_-,NA|322aa|up_5|NC_007333.1_3253332_3254298_+,NA|284aa|up_4|NC_007333.1_3254687_3255539_+,NA|62aa|down_6|NC_007333.1_3269582_3269768_+	NA|116aa|up_9|NC_007333.1_3250001_3250349_-	NA	NA|123aa|up_8|NC_007333.1_3250475_3250844_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|349aa|up_7|NC_007333.1_3251046_3252093_+	cd05284, arabinose_DH_like, D-arabinose dehydrogenase	NA|147aa|up_6|NC_007333.1_3252417_3252858_-	NA	NA|322aa|up_5|NC_007333.1_3253332_3254298_+	NA	NA|284aa|up_4|NC_007333.1_3254687_3255539_+	NA	NA|160aa|up_3|NC_007333.1_3255573_3256053_-	pfam04343, DUF488, Protein of unknown function, DUF488	NA|138aa|up_2|NC_007333.1_3256362_3256776_-	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains	NA|103aa|up_1|NC_007333.1_3256936_3257245_+	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|402aa|up_0|NC_007333.1_3257241_3258447_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|508aa|down_0|NC_007333.1_3259197_3260721_-	PLN02724, PLN02724, Molybdenum cofactor sulfurase	NA|453aa|down_1|NC_007333.1_3260838_3262197_-	pfam08386, Abhydrolase_4, TAP-like protein	NA|269aa|down_2|NC_007333.1_3262312_3263119_-	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown]	NA|391aa|down_3|NC_007333.1_3263170_3264343_-	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|687aa|down_4|NC_007333.1_3264416_3266477_-	PRK00698, tmk, thymidylate kinase; Validated	NA|907aa|down_5|NC_007333.1_3266635_3269356_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|62aa|down_6|NC_007333.1_3269582_3269768_+	NA	NA|239aa|down_7|NC_007333.1_3269911_3270628_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|434aa|down_8|NC_007333.1_3271360_3272662_-	PRK07906, PRK07906, hypothetical protein; Provisional	NA|350aa|down_9|NC_007333.1_3273535_3274585_-	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	16	3447567-3448391	16,10,15	CRISPRCasFinder,CRT,PILER-CR	no		csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Orphan	CGGTCCATCCCCACGTGCGTGGGGCTCAC,CGGTCCATCCCCACGTGCGTGGGGCTCAC,GTGAGCCCCACGCACGTGGGGATGGACC	29,29,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	13,13,13	13	Orphan	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA|121aa|up_7|NC_007333.1_3440172_3440535_-,NA|168aa|up_6|NC_007333.1_3440738_3441242_-,NA|162aa|up_5|NC_007333.1_3441567_3442053_+,NA|359aa|down_0|NC_007333.1_3448482_3449559_+,NA|126aa|down_3|NC_007333.1_3455043_3455421_+	NA|492aa|up_9|NC_007333.1_3437969_3439445_+	pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10	NA|121aa|up_8|NC_007333.1_3439567_3439930_-	COG2044, COG2044, Predicted peroxiredoxins [General function prediction only]	NA|121aa|up_7|NC_007333.1_3440172_3440535_-	NA	NA|168aa|up_6|NC_007333.1_3440738_3441242_-	NA	NA|162aa|up_5|NC_007333.1_3441567_3442053_+	NA	NA|314aa|up_4|NC_007333.1_3442126_3443068_-	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|416aa|up_3|NC_007333.1_3443166_3444414_-	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]	NA|351aa|up_2|NC_007333.1_3444410_3445463_-	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system	NA|210aa|up_1|NC_007333.1_3445965_3446595_+	pfam01694, Rhomboid, Rhomboid family	NA|197aa|up_0|NC_007333.1_3446588_3447179_-	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|359aa|down_0|NC_007333.1_3448482_3449559_+	NA	NA|156aa|down_1|NC_007333.1_3453343_3453811_-	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|260aa|down_2|NC_007333.1_3453829_3454609_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|126aa|down_3|NC_007333.1_3455043_3455421_+	NA	NA|247aa|down_4|NC_007333.1_3455520_3456261_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|39aa|down_5|NC_007333.1_3457221_3457338_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|178aa|down_6|NC_007333.1_3457407_3457941_+	pfam14659, Phage_int_SAM_3, Phage integrase, N-terminal SAM-like domain	NA|113aa|down_7|NC_007333.1_3457937_3458276_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|91aa|down_8|NC_007333.1_3458308_3458581_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|490aa|down_9|NC_007333.1_3458866_3460336_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like
GCF_000012405.1_ASM1240v1	NC_007333	Thermobifida fusca YX, complete genome	17	3449780-3452371	17,11,16,17	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no		csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	Orphan	CGGTCCATCCCCACGTGCGTGGGGCTCAC,CGGTCCATCCCCACGTGCGTGGGGCTCAC,GTGAGCCCCACGCACGTGGGGATGGACC,GTGAGCCCCACGCACGTGGGGATGGACC	29,29,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B:I-E,II-B	42,42,42,42	42	Orphan	csm6,cas3,DEDDh,cas14j,csa3,c2c9_V-U4,WYL,cas10,cmr3gr5,cmr4gr7,cmr6gr7,cmr1gr7,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4,DinG	NA|121aa|up_8|NC_007333.1_3440172_3440535_-,NA|168aa|up_7|NC_007333.1_3440738_3441242_-,NA|162aa|up_6|NC_007333.1_3441567_3442053_+,NA|359aa|up_0|NC_007333.1_3448482_3449559_+,NA|126aa|down_2|NC_007333.1_3455043_3455421_+	NA|121aa|up_9|NC_007333.1_3439567_3439930_-	COG2044, COG2044, Predicted peroxiredoxins [General function prediction only]	NA|121aa|up_8|NC_007333.1_3440172_3440535_-	NA	NA|168aa|up_7|NC_007333.1_3440738_3441242_-	NA	NA|162aa|up_6|NC_007333.1_3441567_3442053_+	NA	NA|314aa|up_5|NC_007333.1_3442126_3443068_-	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|416aa|up_4|NC_007333.1_3443166_3444414_-	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]	NA|351aa|up_3|NC_007333.1_3444410_3445463_-	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system	NA|210aa|up_2|NC_007333.1_3445965_3446595_+	pfam01694, Rhomboid, Rhomboid family	NA|197aa|up_1|NC_007333.1_3446588_3447179_-	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|359aa|up_0|NC_007333.1_3448482_3449559_+	NA	NA|156aa|down_0|NC_007333.1_3453343_3453811_-	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|260aa|down_1|NC_007333.1_3453829_3454609_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|126aa|down_2|NC_007333.1_3455043_3455421_+	NA	NA|247aa|down_3|NC_007333.1_3455520_3456261_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|39aa|down_4|NC_007333.1_3457221_3457338_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|178aa|down_5|NC_007333.1_3457407_3457941_+	pfam14659, Phage_int_SAM_3, Phage integrase, N-terminal SAM-like domain	NA|113aa|down_6|NC_007333.1_3457937_3458276_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|91aa|down_7|NC_007333.1_3458308_3458581_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|490aa|down_8|NC_007333.1_3458866_3460336_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|222aa|down_9|NC_007333.1_3460988_3461654_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
