assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000012165.1_ASM1216v1	NC_007296	Streptococcus pyogenes MGAS6180, complete genome	1	366370-366479	1	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	ATCAGGATTTAGAAGGTACAGAACAGACAGAT	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|151aa|up_4|NC_007296.1_359671_360124_+,NA|158aa|up_3|NC_007296.1_362138_362612_+,NA|84aa|up_2|NC_007296.1_362864_363116_+,NA|167aa|up_1|NC_007296.1_363488_363989_-,NA|84aa|down_6|NC_007296.1_372994_373246_+,NA|114aa|down_8|NC_007296.1_374111_374453_+	NA|667aa|up_9|NC_007296.1_352114_354115_+	PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed	NA|338aa|up_8|NC_007296.1_354605_355619_+	PRK13965, PRK13965, ribonucleotide-diphosphate reductase subunit beta; Provisional	NA|163aa|up_7|NC_007296.1_355622_356111_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|727aa|up_6|NC_007296.1_356077_358258_+	PRK07187, PRK07187, ribonucleoside-diphosphate reductase subunit alpha	NA|251aa|up_5|NC_007296.1_358462_359215_-	cd00233, VIP2, VIP2; A family of actin-ADP-ribosylating toxin	NA|151aa|up_4|NC_007296.1_359671_360124_+	NA	NA|158aa|up_3|NC_007296.1_362138_362612_+	NA	NA|84aa|up_2|NC_007296.1_362864_363116_+	NA	NA|167aa|up_1|NC_007296.1_363488_363989_-	NA	NA|233aa|up_0|NC_007296.1_364256_364955_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|79aa|down_0|NC_007296.1_367222_367459_+	pfam11195, DUF2829, Protein of unknown function (DUF2829)	NA|233aa|down_1|NC_007296.1_367451_368150_+	PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|320aa|down_2|NC_007296.1_368225_369185_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|446aa|down_3|NC_007296.1_369517_370855_+	cd17345, MFS_GlpT, Glycerol-3-Phosphate Transporter of the Major Facilitator Superfamily of transporters	NA|461aa|down_4|NC_007296.1_371027_372410_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|185aa|down_5|NC_007296.1_372440_372995_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|84aa|down_6|NC_007296.1_372994_373246_+	NA	NA|232aa|down_7|NC_007296.1_373265_373961_+	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|114aa|down_8|NC_007296.1_374111_374453_+	NA	NA|216aa|down_9|NC_007296.1_374551_375199_-	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]
GCF_000012165.1_ASM1216v1	NC_007296	Streptococcus pyogenes MGAS6180, complete genome	2	777299-777598	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type II-B,Type II-C,Type II-A	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	3,4,4	4	TypeII-B,TypeII-C,TypeII-A	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|214aa|up_8|NC_007296.1_766793_767435_+,NA|35aa|down_1|NC_007296.1_778884_778989_+	NA|452aa|up_9|NC_007296.1_765314_766670_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|NC_007296.1_766793_767435_+	NA	NA|377aa|up_7|NC_007296.1_767497_768628_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|NC_007296.1_768637_769390_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|NC_007296.1_769389_770154_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|NC_007296.1_770153_770786_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|NC_007296.1_771230_775337_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NC_007296.1_775336_776206_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NC_007296.1_776202_776544_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NC_007296.1_776533_777196_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|378aa|down_0|NC_007296.1_777746_778880_+	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	NA|35aa|down_1|NC_007296.1_778884_778989_+	NA	NA|611aa|down_2|NC_007296.1_779048_780881_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|423aa|down_3|NC_007296.1_781168_782437_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|146aa|down_4|NC_007296.1_782622_783060_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_5|NC_007296.1_783189_784209_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_6|NC_007296.1_784415_784841_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_7|NC_007296.1_784859_785351_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|264aa|down_8|NC_007296.1_785385_786177_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_9|NC_007296.1_786173_787001_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]
GCF_000012165.1_ASM1216v1	NC_007296	Streptococcus pyogenes MGAS6180, complete genome	3	1271895-1271992	3	CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type I-U, Type I-U?,Type I-C	TTTCAATCCACTCACCCATGAAGGGTGAGACT	32	0	0	NA	NA	I-C	1	1	TypeI-U,TypeI-U?,TypeI-C	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|64aa|up_7|NC_007296.1_1265582_1265774_-,NA|174aa|up_4|NC_007296.1_1267333_1267855_+,NA|188aa|down_8|NC_007296.1_1282962_1283526_-	NA|67aa|up_9|NC_007296.1_1264464_1264665_+	pfam13619, KTSC, KTSC domain	NA|243aa|up_8|NC_007296.1_1264843_1265572_-	COG3561, COG3561, Phage anti-repressor protein [Transcription]	NA|64aa|up_7|NC_007296.1_1265582_1265774_-	NA	NA|120aa|up_6|NC_007296.1_1266569_1266929_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|127aa|up_5|NC_007296.1_1266942_1267323_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|174aa|up_4|NC_007296.1_1267333_1267855_+	NA	NA|385aa|up_3|NC_007296.1_1267973_1269128_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|369aa|up_2|NC_007296.1_1269238_1270345_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NC_007296.1_1270387_1271011_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NC_007296.1_1271023_1271734_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NC_007296.1_1272139_1272433_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|NC_007296.1_1272443_1273469_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|NC_007296.1_1273465_1274140_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|NC_007296.1_1274141_1274990_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_4|NC_007296.1_1274994_1276890_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_5|NC_007296.1_1276889_1277618_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_6|NC_007296.1_1277750_1280159_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_7|NC_007296.1_1280312_1282961_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_8|NC_007296.1_1282962_1283526_-	NA	NA|67aa|down_9|NC_007296.1_1283522_1283723_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
GCF_000012165.1_ASM1216v1	NC_007296	Streptococcus pyogenes MGAS6180, complete genome	4	1855508-1855604	4	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|58aa|up_9|NC_007296.1_1850613_1850787_-,NA|538aa|up_8|NC_007296.1_1851073_1852687_-,NA|174aa|up_7|NC_007296.1_1852676_1853198_-,NA|123aa|up_6|NC_007296.1_1853207_1853576_-,NA|64aa|up_5|NC_007296.1_1853484_1853676_-,NA|111aa|up_4|NC_007296.1_1853675_1854008_-,NA|61aa|up_3|NC_007296.1_1854019_1854202_-,NA|90aa|up_2|NC_007296.1_1854422_1854692_-,NA	NA|58aa|up_9|NC_007296.1_1850613_1850787_-	NA	NA|538aa|up_8|NC_007296.1_1851073_1852687_-	NA	NA|174aa|up_7|NC_007296.1_1852676_1853198_-	NA	NA|123aa|up_6|NC_007296.1_1853207_1853576_-	NA	NA|64aa|up_5|NC_007296.1_1853484_1853676_-	NA	NA|111aa|up_4|NC_007296.1_1853675_1854008_-	NA	NA|61aa|up_3|NC_007296.1_1854019_1854202_-	NA	NA|90aa|up_2|NC_007296.1_1854422_1854692_-	NA	NA|189aa|up_1|NC_007296.1_1854721_1855288_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|NC_007296.1_1855303_1855492_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|NC_007296.1_1855660_1856104_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|NC_007296.1_1856283_1857447_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|NC_007296.1_1857603_1858215_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|NC_007296.1_1858944_1859217_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|456aa|down_4|NC_007296.1_1859233_1860601_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|NC_007296.1_1860630_1861083_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|NC_007296.1_1861079_1863056_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|NC_007296.1_1863145_1865044_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|NC_007296.1_1865167_1865485_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|NC_007296.1_1866260_1867382_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
