assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000011925.1_ASM1192v1	NC_002976	Staphylococcus epidermidis RP62A, complete sequence	1	1993515-1993597	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	Orphan	ATCATAGATAGTTTTGCTTCTGTTT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	NA,NA	NA|331aa|up_9|NC_002976.3_1981470_1982463_+	cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases	NA|134aa|up_8|NC_002976.3_1982519_1982921_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|139aa|up_7|NC_002976.3_1982989_1983406_-	pfam11070, DUF2871, Protein of unknown function (DUF2871)	NA|100aa|up_6|NC_002976.3_1983619_1983919_-	cd08545, YcnI_like, Reeler-like domain of YcnI and similar proteins	NA|316aa|up_5|NC_002976.3_1986077_1987025_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|482aa|up_4|NC_002976.3_1987114_1988560_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|126aa|up_3|NC_002976.3_1988713_1989091_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|702aa|up_2|NC_002976.3_1990252_1992358_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|141aa|up_1|NC_002976.3_1992430_1992853_+	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only]	NA|117aa|up_0|NC_002976.3_1993043_1993394_+	pfam16230, DUF4889, Domain of unknown function (DUF4889)	NA|427aa|down_0|NC_002976.3_1993676_1994957_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|122aa|down_1|NC_002976.3_1995121_1995487_-	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|210aa|down_2|NC_002976.3_1995610_1996240_-	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN	NA|149aa|down_3|NC_002976.3_1996403_1996850_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|388aa|down_4|NC_002976.3_1997555_1998719_-	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|219aa|down_5|NC_002976.3_1998975_1999632_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|345aa|down_6|NC_002976.3_1999660_2000695_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|151aa|down_7|NC_002976.3_2000704_2001157_-	pfam13185, GAF_2, GAF domain	NA|226aa|down_8|NC_002976.3_2001176_2001854_-	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|197aa|down_9|NC_002976.3_2001846_2002437_-	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]
GCF_000011925.1_ASM1192v1	NC_002976	Staphylococcus epidermidis RP62A, complete sequence	2	2517615-2517868	1,2,1	CRT,CRISPRCasFinder,PILER-CR	no	cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	cas3,csa3,DEDDh,DinG,WYL,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	Type III-A,Type III-C,Type III-B,Type III-D	TACTAGTTCTCGTCCCCTTTTCTTCGGGGTGGGTATCGATC,GTTCTCGTCCCCTTTTCTTCGGGGTGGGTATCGATCC,GTTCTCGTCCCCTTTTCTTCGGGGTGGGTATCGATCC	41,37,37	0	0	NA	NA	NA:NA:NA	3,3,2	3	TypeIII-A,TypeIII-C,TypeIII-B,TypeIII-D	cas3,csa3,DEDDh,DinG,WYL,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	NA,NA|74aa|down_3|NC_002976.3_2521031_2521253_+	NA|286aa|up_9|NC_002976.3_2507319_2508177_-	cd10446, GIY-YIG_unchar_1, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	cas6|245aa|up_8|NC_002976.3_2509030_2509765_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	csm6|423aa|up_7|NC_002976.3_2509761_2511030_-	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	csm5gr7|341aa|up_6|NC_002976.3_2511029_2512052_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|303aa|up_5|NC_002976.3_2512054_2512963_-	TIGR01903, Hypothetical_protein	csm3gr7|215aa|up_4|NC_002976.3_2512973_2513618_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|142aa|up_3|NC_002976.3_2513619_2514045_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|758aa|up_2|NC_002976.3_2514047_2516321_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas2|102aa|up_1|NC_002976.3_2516333_2516639_-	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas1|302aa|up_0|NC_002976.3_2516638_2517544_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	NA|49aa|down_0|NC_002976.3_2518525_2518672_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|260aa|down_1|NC_002976.3_2518784_2519564_-	pfam04507, DUF576, Csa1 family	NA|168aa|down_2|NC_002976.3_2520513_2521017_+	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|74aa|down_3|NC_002976.3_2521031_2521253_+	NA	NA|376aa|down_4|NC_002976.3_2521510_2522638_-	cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)	NA|166aa|down_5|NC_002976.3_2523161_2523659_+	PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional	NA|382aa|down_6|NC_002976.3_2523970_2525116_-	cd17274, RMtype1_S_Eco540ANI-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|519aa|down_7|NC_002976.3_2525108_2526665_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|194aa|down_8|NC_002976.3_2526665_2527247_-	cd17246, RMtype1_S_SonII-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S	NA|931aa|down_9|NC_002976.3_2527338_2530131_-	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
