The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_002976	Staphylococcus epidermidis RP62A, complete sequence	2616530	362235	372771	2616530		Staphylococcus_phage(22.22%)	13	NA	NA
WP_001830355.1|362235_363075_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	43.0	1.2e-60
WP_001830351.1|363277_364384_+	glycosyltransferase family 2 protein	NA	A8CG95	Salmonella_phage	43.2	6.3e-62
WP_025987135.1|364453_365506_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.6	2.0e-17
WP_001830352.1|365508_366198_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	3.4e-34
WP_001830332.1|366172_366646_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001830329.1|366696_367134_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001830315.1|367729_367885_-	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	75.5	9.8e-14
WP_001830331.1|368234_368834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001830330.1|368936_369650_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	44.8	1.6e-55
WP_001830341.1|369650_370070_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_001830328.1|370074_370746_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.7	4.1e-64
WP_001830349.1|371042_371630_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001830323.1|371619_372771_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	39.6	7.5e-26
>prophage 2
NC_002976	Staphylococcus epidermidis RP62A, complete sequence	2616530	394194	404629	2616530		uncultured_Caudovirales_phage(66.67%)	10	NA	NA
WP_002438897.1|394194_395700_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.0	5.5e-61
WP_001832596.1|395983_396484_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	1.1e-50
WP_001829684.1|396497_397373_-	DMT family transporter	NA	NA	NA	NA	NA
WP_001829589.1|398128_398527_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	100.0	2.0e-71
WP_001829582.1|398489_400595_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	100.0	0.0e+00
WP_001829597.1|400713_401682_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	100.0	3.9e-185
WP_002456931.1|401656_401920_+	hypothetical protein	NA	A0A2H4IYB4	uncultured_Caudovirales_phage	100.0	5.5e-17
WP_002438902.1|401935_402910_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	99.7	5.9e-165
WP_002438903.1|402893_403853_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	100.0	4.1e-17
WP_001829596.1|403849_404629_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.6	5.1e-18
>prophage 3
NC_002976	Staphylococcus epidermidis RP62A, complete sequence	2616530	644204	652674	2616530		Synechococcus_phage(33.33%)	9	NA	NA
WP_002486053.1|644204_644687_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	2.6e-20
WP_002486052.1|644673_645801_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001831723.1|645801_646506_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	H8ZMN3	Synechococcus_phage	42.5	1.6e-47
WP_001831728.1|646505_646766_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_001831727.1|646767_647439_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_002486056.1|647431_649621_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.4	1.1e-139
WP_002485328.1|649599_651084_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.9	7.2e-45
WP_001831685.1|651076_652108_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.4	2.1e-64
WP_001831672.1|652107_652674_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.0	6.1e-29
>prophage 4
NC_002976	Staphylococcus epidermidis RP62A, complete sequence	2616530	1242019	1299928	2616530	transposase,protease,integrase,tRNA	Bacillus_virus(12.5%)	55	1241586:1241602	1296124:1296140
1241586:1241602	attL	TAAAAAAACCTGAGACA	NA	NA	NA	NA
WP_001830840.1|1242019_1243159_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.3e-83
WP_010959189.1|1243179_1244205_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001830787.1|1244206_1245211_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001830895.1|1245224_1245827_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_001830784.1|1245839_1246295_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_002486085.1|1246306_1247599_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_001830822.1|1247744_1248029_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_001830797.1|1248040_1248361_-|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
WP_001830820.1|1248365_1248674_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_001830764.1|1248795_1249317_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_002486084.1|1249316_1250156_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_001830756.1|1250562_1250703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001832708.1|1250786_1251272_-	DUF4930 family protein	NA	NA	NA	NA	NA
WP_001830753.1|1251436_1251616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001092058.1|1252054_1252717_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010959190.1|1253108_1253168_+	erythromycin resistance leader peptide	NA	NA	NA	NA	NA
WP_001072201.1|1253250_1253982_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
WP_000067268.1|1254107_1254890_-	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NA	NA	NA	NA	NA
WP_000361059.1|1255040_1255418_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001557544.1|1255424_1257317_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000868132.1|1257313_1258399_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
WP_002485656.1|1259068_1259779_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_002440172.1|1259962_1261228_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_001830862.1|1261238_1263869_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.9	7.5e-154
WP_001830783.1|1264211_1264772_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_001830878.1|1264938_1266006_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_002456470.1|1266295_1267579_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_002440176.1|1267602_1268577_-	porphobilinogen synthase	NA	NA	NA	NA	NA
WP_001832668.1|1268566_1269247_-	uroporphyrinogen-III synthase	NA	NA	NA	NA	NA
WP_001830811.1|1269280_1270207_-	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
WP_002486196.1|1270260_1271073_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_001830773.1|1271094_1272441_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_001830838.1|1272610_1273198_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_001830765.1|1273309_1274572_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	61.7	7.7e-141
WP_001830810.1|1274858_1276160_-	trigger factor	NA	NA	NA	NA	NA
WP_001830807.1|1276320_1277244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001830874.1|1277260_1277872_-	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	34.4	8.1e-19
WP_001830839.1|1278289_1278646_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_001830767.1|1278697_1278898_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001830789.1|1278925_1279453_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.8	1.4e-11
WP_001830900.1|1279660_1281163_-	amino acid permease	NA	NA	NA	NA	NA
WP_002440177.1|1281591_1283529_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.7	2.3e-115
WP_001830772.1|1283881_1284802_-	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	31.2	3.4e-29
WP_001830762.1|1284801_1286172_-	DnaD domain protein	NA	NA	NA	NA	NA
WP_001830825.1|1286172_1286643_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_107362591.1|1286992_1287112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002440179.1|1287162_1288188_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_001830774.1|1289031_1289643_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_001830823.1|1289658_1290531_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.3	1.2e-44
WP_002440182.1|1290546_1293177_-	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.4	1.0e-46
WP_002486197.1|1293471_1295169_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	36.7	1.0e-31
WP_001830897.1|1295168_1295879_-	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	29.5	1.4e-06
WP_001830826.1|1296194_1297463_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	55.6	9.2e-09
1296124:1296140	attR	TAAAAAAACCTGAGACA	NA	NA	NA	NA
WP_001830889.1|1297505_1298627_-	citrate synthase	NA	NA	NA	NA	NA
WP_000195429.1|1298755_1299928_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 5
NC_002976	Staphylococcus epidermidis RP62A, complete sequence	2616530	1365620	1400420	2616530	tRNA	Staphylococcus_phage(89.47%)	26	NA	NA
WP_010959194.1|1365620_1376699_-	YSIRK signal domain/LPXTG anchor domain surface protein	NA	A0A2H4PQU6	Staphylococcus_phage	25.5	4.6e-27
WP_001830891.1|1377103_1377415_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	71.8	4.1e-35
WP_001830785.1|1377440_1379858_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.4	0.0e+00
WP_002456450.1|1380146_1381361_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	83.5	3.0e-182
WP_002456449.1|1381467_1382421_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.0	9.5e-67
WP_002456448.1|1382417_1382981_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	65.9	6.2e-66
WP_001830809.1|1383214_1383616_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001830886.1|1384105_1384933_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002485797.1|1385176_1386178_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	70.3	1.2e-131
WP_002456446.1|1386435_1386897_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	84.2	1.2e-59
WP_002502922.1|1386909_1388091_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	75.8	3.3e-178
WP_002494783.1|1388103_1388736_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	77.6	1.4e-87
WP_002494782.1|1388742_1389786_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	66.8	8.9e-135
WP_002484471.1|1390221_1391706_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	65.6	2.5e-13
WP_001830727.1|1392053_1392905_-	N-acetylglucosaminidase	NA	A0A1J0MFB0	Staphylococcus_phage	35.6	1.0e-32
WP_002456441.1|1393282_1393498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002456440.1|1393705_1394185_+	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	42.3	3.5e-25
WP_001830734.1|1394190_1394634_+	competence protein ComK	NA	NA	NA	NA	NA
WP_002456439.1|1394620_1395064_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	42.2	9.0e-20
WP_001830731.1|1395203_1395917_-	transaldolase	NA	M1PR54	Cyanophage	37.4	4.1e-22
WP_002446728.1|1396193_1396502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830726.1|1396538_1396904_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	57.0	4.1e-34
WP_001830729.1|1396900_1397254_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	32.5	8.5e-05
WP_001092058.1|1398492_1399155_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010959190.1|1399546_1399606_+	erythromycin resistance leader peptide	NA	NA	NA	NA	NA
WP_001072201.1|1399688_1400420_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
>prophage 6
NC_002976	Staphylococcus epidermidis RP62A, complete sequence	2616530	1403751	1420553	2616530	integrase	Staphylococcus_phage(66.67%)	16	1417406:1417421	1422070:1422085
WP_000868132.1|1403751_1404837_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
WP_002469577.1|1405852_1406008_-	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	79.6	5.2e-15
WP_002456435.1|1406292_1407129_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	68.6	6.1e-110
WP_002456434.1|1407308_1408217_-	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	80.6	1.8e-102
WP_001829830.1|1408319_1409519_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	85.4	4.1e-192
WP_002469572.1|1409888_1411481_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	83.6	1.6e-268
WP_002456431.1|1411711_1412497_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.3	2.0e-99
WP_002456430.1|1412483_1412951_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	57.4	5.5e-44
WP_002457867.1|1413021_1413270_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	83.1	6.5e-36
WP_001829851.1|1413266_1414268_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	50.2	6.9e-92
WP_002456429.1|1414257_1415682_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	63.9	6.6e-173
WP_002456427.1|1416932_1417598_+	Ltp family lipoprotein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	41.8	7.0e-08
1417406:1417421	attL	TAAAGAAGATGCACAA	NA	NA	NA	NA
WP_002456426.1|1417759_1418047_+	hypothetical protein	NA	A0A2H4JGN1	uncultured_Caudovirales_phage	50.0	5.5e-18
WP_002456424.1|1418573_1419308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002456423.1|1419687_1419900_-	hypothetical protein	NA	A0A2H4JCA1	uncultured_Caudovirales_phage	72.9	7.3e-20
WP_002456422.1|1420058_1420553_+|integrase	site-specific integrase	integrase	B7T092	Staphylococcus_virus	76.1	3.8e-67
1422070:1422085	attR	TTGTGCATCTTCTTTA	NA	NA	NA	NA
>prophage 7
NC_002976	Staphylococcus epidermidis RP62A, complete sequence	2616530	1564991	1697887	2616530	integrase,transposase,terminase,tail,holin	Staphylococcus_phage(97.2%)	146	1639122:1639140	1699668:1699686
WP_002505947.1|1564991_1566242_-	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	28.8	8.7e-36
WP_001830019.1|1566661_1566886_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_001260014.1|1567767_1569306_-	recombinase family protein	NA	A0A0N9RZT8	Staphylococcus_phage	100.0	5.3e-277
WP_002504503.1|1569295_1569877_-	DNA-binding protein	NA	A0A0N9SK69	Staphylococcus_phage	100.0	3.8e-103
WP_001130902.1|1570078_1570672_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0N7GFG7	Staphylococcus_phage	100.0	7.9e-112
WP_002504504.1|1570655_1571051_-	hypothetical protein	NA	A0A0N9RRM7	Staphylococcus_phage	100.0	5.1e-67
WP_002504505.1|1571052_1571799_-	NTP pyrophosphohydrolase	NA	A0A0N9SIY2	Staphylococcus_phage	100.0	5.6e-139
WP_002504506.1|1571811_1572051_-	hypothetical protein	NA	A0A0N9S8B1	Staphylococcus_phage	100.0	6.7e-38
WP_002504507.1|1572066_1572315_-	thioredoxin family protein	NA	A0A0N9SGY3	Staphylococcus_phage	100.0	1.8e-41
WP_002504508.1|1572355_1572958_-	AAA family ATPase	NA	A0A0N9RTZ3	Staphylococcus_phage	100.0	4.0e-111
WP_002504509.1|1572985_1574008_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0N9SK77	Staphylococcus_phage	100.0	1.1e-198
WP_071813268.1|1574053_1574410_-	ribonucleoside-diphosphate reductase	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	60.2	5.9e-38
WP_002504510.1|1574600_1575425_-	HNH endonuclease	NA	A0A0N9SHZ0	Staphylococcus_phage	100.0	2.7e-158
WP_002504511.1|1575578_1578488_-	intein-containing class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A0N7GFG8	Staphylococcus_phage	100.0	0.0e+00
WP_002504512.1|1578509_1578956_-	hypothetical protein	NA	A0A0N9STF9	Staphylococcus_phage	100.0	4.0e-76
WP_002504513.1|1578955_1579369_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A0N9RZU5	Staphylococcus_phage	99.3	1.8e-70
WP_002504514.1|1579398_1579551_-	hypothetical protein	NA	A0A0N9SK94	Staphylococcus_phage	100.0	1.2e-21
WP_010959216.1|1579569_1580271_-	hypothetical protein	NA	A0A0N9RRN5	Staphylococcus_phage	100.0	1.1e-128
WP_002504516.1|1580282_1580792_-	siphovirus Gp157 family protein	NA	A0A0N9SIY9	Staphylococcus_phage	100.0	2.1e-84
WP_002504517.1|1580917_1581514_-	hypothetical protein	NA	A0A0N9S8C0	Staphylococcus_phage	92.1	1.9e-57
WP_000824898.1|1581513_1581744_-	hypothetical protein	NA	A0A0N9SGZ7	Staphylococcus_phage	100.0	1.8e-32
WP_000356944.1|1581757_1581940_-	hypothetical protein	NA	A0A0N7GFG9	Staphylococcus_phage	100.0	3.1e-27
WP_000792728.1|1581942_1582296_-	hypothetical protein	NA	A0A0N9RU04	Staphylococcus_phage	100.0	1.2e-59
WP_000598581.1|1582328_1583327_-	DNA cytosine methyltransferase	NA	A0A0N9SK84	Staphylococcus_phage	100.0	3.7e-194
WP_002504519.1|1583341_1584028_-	methyltransferase domain-containing protein	NA	A0A0N9SHZ9	Staphylococcus_phage	100.0	5.9e-127
WP_002504520.1|1584017_1584209_-	hypothetical protein	NA	A0A0N9STH2	Staphylococcus_phage	100.0	1.0e-33
WP_002504521.1|1584201_1584813_-	nucleoside 2-deoxyribosyltransferase	NA	A0A0N9RZV9	Staphylococcus_phage	100.0	2.8e-112
WP_002504522.1|1584827_1585010_-	hypothetical protein	NA	A0A0N9SKA8	Staphylococcus_phage	100.0	1.4e-27
WP_000865652.1|1585009_1585261_-	hypothetical protein	NA	A0A0N9RRP5	Staphylococcus_phage	100.0	3.8e-39
WP_002504525.1|1585571_1585859_-	hypothetical protein	NA	A0A0N9SIZ8	Staphylococcus_phage	100.0	4.4e-44
WP_002504526.1|1585851_1586118_-	hypothetical protein	NA	A0A0N9S8D1	Staphylococcus_phage	100.0	2.9e-42
WP_000119719.1|1586129_1586303_-	hypothetical protein	NA	A0A0N9SH07	Staphylococcus_phage	100.0	8.9e-24
WP_002504527.1|1586416_1586806_-	hypothetical protein	NA	A0A0N9RU12	Staphylococcus_phage	100.0	1.1e-50
WP_010959221.1|1586893_1588192_-	ATP-dependent DNA ligase	NA	A0A0N9SK95	Staphylococcus_phage	100.0	1.3e-244
WP_002504529.1|1588201_1588516_-	hypothetical protein	NA	A0A0N9SI08	Staphylococcus_phage	100.0	5.4e-51
WP_002504530.1|1588653_1589034_-	hypothetical protein	NA	A0A0N9STI1	Staphylococcus_phage	99.2	4.2e-50
WP_010959222.1|1589145_1591632_-	hypothetical protein	NA	A0A0N7GFH1	Staphylococcus_phage	99.9	0.0e+00
WP_010959223.1|1592094_1593543_-	PHP domain-containing protein	NA	A0A0N9SKC7	Staphylococcus_phage	100.0	1.5e-281
WP_002504533.1|1593555_1593930_-	hypothetical protein	NA	A0A0N9RRQ3	Staphylococcus_phage	100.0	7.3e-63
WP_002504534.1|1594096_1594657_+	hypothetical protein	NA	A0A0N9SJ02	Staphylococcus_phage	100.0	4.3e-67
WP_002504535.1|1595009_1595414_+	YolD-like family protein	NA	A0A0N9S8D9	Staphylococcus_phage	100.0	1.5e-74
WP_002504537.1|1595661_1596303_-	hypothetical protein	NA	A0A0N9RU21	Staphylococcus_phage	100.0	2.6e-60
WP_002504538.1|1596408_1597131_-	hypothetical protein	NA	A0A0N7GFH2	Staphylococcus_phage	100.0	2.5e-91
WP_000686449.1|1597239_1598040_-	metallophosphoesterase	NA	A0A0N9SKA2	Staphylococcus_phage	100.0	4.0e-151
WP_010959224.1|1598043_1598538_-	hypothetical protein	NA	A0A0N9SI15	Staphylococcus_phage	100.0	6.2e-86
WP_000755772.1|1598594_1598864_-	hypothetical protein	NA	A0A0N9STI7	Staphylococcus_phage	100.0	6.9e-39
WP_002504556.1|1598847_1599039_-	hypothetical protein	NA	A0A0N9RZX7	Staphylococcus_phage	88.9	3.9e-20
WP_002504557.1|1599341_1599737_-	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A0N9SKD8	Staphylococcus_phage	100.0	1.0e-67
WP_002504558.1|1599736_1599967_-	addiction module antitoxin	NA	A0A0N9RRQ9	Staphylococcus_phage	100.0	1.7e-33
WP_002504559.1|1600129_1600648_-	metallophosphoesterase	NA	A0A0N9SJ06	Staphylococcus_phage	99.4	2.8e-97
WP_002504560.1|1600647_1601298_-	hypothetical protein	NA	A0A0N7GFH3	Staphylococcus_phage	100.0	3.1e-117
WP_002504561.1|1601297_1601615_-	hypothetical protein	NA	A0A0N9S8E9	Staphylococcus_phage	100.0	3.7e-52
WP_010959229.1|1601607_1602333_-	metallophosphoesterase	NA	A0A0N9SH20	Staphylococcus_phage	100.0	2.4e-139
WP_002504563.1|1602332_1602554_-	hypothetical protein	NA	A0A0N9RU28	Staphylococcus_phage	100.0	1.3e-35
WP_002504564.1|1602573_1602750_-	hypothetical protein	NA	A0A0N9SKB9	Staphylococcus_phage	100.0	1.1e-24
WP_002504565.1|1602742_1603285_-	hypothetical protein	NA	A0A0N9SI25	Staphylococcus_phage	100.0	2.7e-98
WP_002504566.1|1603300_1603573_-	hypothetical protein	NA	A0A0N9STJ5	Staphylococcus_phage	100.0	2.7e-43
WP_002504567.1|1603598_1603754_-	transcriptional activator RinB	NA	A0A0N9RZY5	Staphylococcus_phage	100.0	1.7e-18
WP_002504568.1|1603750_1604035_-	hypothetical protein	NA	A0A0N7GFH4	Staphylococcus_phage	100.0	5.0e-48
WP_001187008.1|1604050_1604236_-	hypothetical protein	NA	A0A0N9SKE7	Staphylococcus_phage	100.0	1.5e-24
WP_002504569.1|1604220_1604400_-	hypothetical protein	NA	A0A0N9RRR6	Staphylococcus_phage	100.0	2.1e-23
WP_002504570.1|1604415_1604898_-	hypothetical protein	NA	A0A0N9SJ15	Staphylococcus_phage	100.0	3.4e-73
WP_002504571.1|1604899_1605088_-	Lar family restriction alleviation protein	NA	A0A0N9S8F9	Staphylococcus_phage	100.0	8.2e-31
WP_002504572.1|1605094_1605298_-	hypothetical protein	NA	A0A0N9SH33	Staphylococcus_phage	100.0	5.7e-30
WP_002504573.1|1605302_1605569_-	hypothetical protein	NA	A0A0N9RU37	Staphylococcus_phage	100.0	1.0e-42
WP_002504574.1|1605590_1605866_-	hypothetical protein	NA	A0A0N9SKC5	Staphylococcus_phage	100.0	4.5e-46
WP_002504575.1|1605888_1606128_-	hypothetical protein	NA	A0A0N7GFH5	Staphylococcus_phage	100.0	1.7e-36
WP_000359469.1|1606149_1606374_-	hypothetical protein	NA	A0A0N9SI40	Staphylococcus_phage	100.0	2.0e-31
WP_000862563.1|1606379_1606727_-	thermonuclease family protein	NA	A0A0N9STK3	Staphylococcus_phage	100.0	4.4e-62
WP_002504576.1|1606723_1607134_-	hypothetical protein	NA	A0A0N9RZZ6	Staphylococcus_phage	100.0	7.0e-75
WP_000312937.1|1607173_1607437_-	hypothetical protein	NA	A0A0N9SKF2	Staphylococcus_phage	100.0	6.9e-44
WP_002504577.1|1607439_1607748_-	hypothetical protein	NA	A0A0N9RRS4	Staphylococcus_phage	100.0	5.8e-50
WP_002504579.1|1608039_1608315_-	hypothetical protein	NA	A0A0N7GFH6	Staphylococcus_phage	100.0	5.0e-45
WP_002504580.1|1608327_1608525_-	hypothetical protein	NA	A0A0N9SH39	Staphylococcus_phage	100.0	4.0e-28
WP_002504581.1|1608535_1609582_-	hypothetical protein	NA	A0A0N9RU46	Staphylococcus_phage	100.0	4.8e-197
WP_001106022.1|1609625_1610300_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	100.0	6.2e-129
WP_000175735.1|1610763_1611249_-	trimethoprim-resistant dihydrofolate reductase DfrC	NA	A0A0N9S8H6	Staphylococcus_phage	100.0	1.1e-90
WP_000282655.1|1611290_1612247_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	100.0	1.1e-190
WP_000195429.1|1612761_1613934_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001028144.1|1614063_1615503_-	aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
WP_000393259.1|1615503_1615896_-	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
WP_000195429.1|1615952_1617125_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_010959234.1|1617908_1618646_-	ribonuclease Z	NA	A0A0N9RZK9	Staphylococcus_phage	100.0	1.1e-134
WP_010959235.1|1618838_1620605_-	single-stranded DNA-binding protein	NA	A0A0N9SK20	Staphylococcus_phage	100.0	0.0e+00
WP_002504675.1|1620607_1621720_-	hypothetical protein	NA	A0A0N9RRG7	Staphylococcus_phage	100.0	2.8e-219
WP_002504676.1|1621736_1623269_-	helicase DnaB	NA	A0A0N9SIU7	Staphylococcus_phage	100.0	5.6e-295
WP_002504677.1|1623290_1623809_-	hypothetical protein	NA	A0A0N9S850	Staphylococcus_phage	100.0	2.1e-92
WP_002504678.1|1623885_1624854_-	ATP-binding protein	NA	A0A0N9SGS5	Staphylococcus_phage	100.0	5.3e-182
WP_000852323.1|1624977_1625937_-	hypothetical protein	NA	A0A0N7GFF9	Staphylococcus_phage	100.0	6.7e-169
WP_000668931.1|1625980_1626661_-	hypothetical protein	NA	A0A0N9RTS7	Staphylococcus_phage	100.0	2.0e-127
WP_002504679.1|1626678_1627167_-	hypothetical protein	NA	A0A0N9SK25	Staphylococcus_phage	100.0	8.1e-54
WP_002504680.1|1627182_1627431_-	hypothetical protein	NA	A0A0N9SHT9	Staphylococcus_phage	100.0	2.0e-40
WP_002504681.1|1627590_1628595_-	hypothetical protein	NA	A0A0N9ST56	Staphylococcus_phage	100.0	3.1e-185
WP_002504682.1|1628606_1629887_-	hypothetical protein	NA	A0A0N9RZM2	Staphylococcus_phage	100.0	6.5e-236
WP_002504683.1|1630197_1631241_-|integrase	site-specific integrase	integrase	A0A0N9SK33	Staphylococcus_phage	100.0	3.8e-194
WP_002504685.1|1631924_1632353_-	hypothetical protein	NA	A0A0N9RRH5	Staphylococcus_phage	100.0	5.0e-76
WP_010959238.1|1632430_1632952_-	hypothetical protein	NA	A0A0N7GFG0	Staphylococcus_phage	99.4	4.4e-90
WP_010959239.1|1632951_1633404_-	hypothetical protein	NA	A0A0N9SIV3	Staphylococcus_phage	100.0	6.7e-79
WP_010959240.1|1633519_1634200_-	hypothetical protein	NA	A0A0N9S858	Staphylococcus_phage	100.0	4.6e-124
WP_002504623.1|1634228_1634492_-	hypothetical protein	NA	A0A0N9SGT4	Staphylococcus_phage	100.0	3.4e-43
WP_002504624.1|1634584_1634908_-	hypothetical protein	NA	A0A0N9RTT7	Staphylococcus_phage	100.0	1.5e-56
WP_002504625.1|1634952_1635612_-	antirestriction protein ArdA	NA	A0A0N9SK30	Staphylococcus_phage	100.0	9.4e-122
WP_010959241.1|1635764_1636154_-	hypothetical protein	NA	A0A0N9SHU5	Staphylococcus_phage	100.0	3.9e-67
WP_010959242.1|1636290_1636551_-	hypothetical protein	NA	A0A0N9ST70	Staphylococcus_phage	100.0	7.1e-41
WP_002504552.1|1636625_1636841_-	hypothetical protein	NA	A0A0N7GFG1	Staphylococcus_phage	100.0	2.2e-35
WP_002504554.1|1637020_1637305_-	hypothetical protein	NA	A0A0N9SK40	Staphylococcus_phage	100.0	1.6e-46
1639122:1639140	attL	AGAAAATACATATAATAAT	NA	NA	NA	NA
WP_002504834.1|1641199_1642075_-	hypothetical protein	NA	A0A0N9SIV7	Staphylococcus_phage	100.0	4.8e-166
WP_000409961.1|1642110_1644396_-	AAA family ATPase	NA	A0A0N9S864	Staphylococcus_phage	100.0	0.0e+00
WP_002504833.1|1644531_1646028_+	hypothetical protein	NA	A0A0N9SGU3	Staphylococcus_phage	100.0	2.3e-269
WP_002504832.1|1646287_1646617_+	HU family DNA-binding protein	NA	A0A0N9RTU9	Staphylococcus_phage	100.0	1.7e-52
WP_000057341.1|1646642_1646828_+	YonK family protein	NA	A0A0N7GFG2	Staphylococcus_phage	100.0	1.7e-25
WP_002504831.1|1646836_1648021_+	hypothetical protein	NA	A0A0N9SK37	Staphylococcus_phage	100.0	1.3e-222
WP_001007716.1|1649715_1650600_+	hypothetical protein	NA	A0A0N9SHV5	Staphylococcus_phage	100.0	4.5e-172
WP_002504830.1|1650592_1652392_+|terminase	terminase	terminase	A0A0N9RZP6	Staphylococcus_phage	100.0	6.8e-207
WP_000389594.1|1652409_1653972_+	hypothetical protein	NA	A0A0N9SK48	Staphylococcus_phage	100.0	6.6e-299
WP_002504829.1|1653964_1655344_+	hypothetical protein	NA	A0A0N9RRJ7	Staphylococcus_phage	100.0	2.0e-246
WP_002504828.1|1655371_1655812_+	hypothetical protein	NA	A0A0N9SIW4	Staphylococcus_phage	100.0	1.6e-77
WP_002504827.1|1655850_1656852_+	hypothetical protein	NA	A0A0N9S885	Staphylococcus_phage	100.0	3.3e-110
WP_000985467.1|1656926_1657478_+	hypothetical protein	NA	A0A0N9SGV3	Staphylococcus_phage	100.0	1.5e-80
WP_000134539.1|1657495_1657930_+	hypothetical protein	NA	A0A0N9RTW0	Staphylococcus_phage	100.0	3.5e-69
WP_001086334.1|1657919_1658237_+	hypothetical protein	NA	A0A0N9SK47	Staphylococcus_phage	100.0	2.6e-53
WP_000384369.1|1658240_1658906_+	hypothetical protein	NA	A0A0N9SHW2	Staphylococcus_phage	100.0	1.3e-123
WP_001177112.1|1658895_1659417_+	hypothetical protein	NA	A0A0N9ST98	Staphylococcus_phage	100.0	2.0e-95
WP_000391855.1|1659422_1660295_+	hypothetical protein	NA	A0A0N9RZR7	Staphylococcus_phage	100.0	1.5e-159
WP_002504825.1|1660333_1661125_+	hypothetical protein	NA	A0A0N7GFG4	Staphylococcus_phage	100.0	5.4e-140
WP_000700062.1|1661208_1661766_+	hypothetical protein	NA	A0A0N9SK55	Staphylococcus_phage	100.0	2.7e-98
WP_002504823.1|1661765_1662239_+	hypothetical protein	NA	A0A0N9RRK6	Staphylococcus_phage	100.0	3.5e-86
WP_010959245.1|1662254_1663271_+|integrase	site-specific integrase	integrase	A0A0N9SIX3	Staphylococcus_phage	100.0	3.6e-197
WP_010959246.1|1663367_1671641_+|tail	phage tail tape measure protein	tail	A0A0N9S894	Staphylococcus_phage	100.0	0.0e+00
WP_010959247.1|1671662_1673744_+	hypothetical protein	NA	A0A0N9SGW2	Staphylococcus_phage	99.9	0.0e+00
WP_002504819.1|1673804_1681850_+	hypothetical protein	NA	A0A0N9RTX0	Staphylococcus_phage	100.0	0.0e+00
WP_002504818.1|1681852_1682227_+	hypothetical protein	NA	A0A0N9SK58	Staphylococcus_phage	100.0	5.0e-64
WP_002504817.1|1682219_1682387_+	hypothetical protein	NA	A0A0N7GFG5	Staphylococcus_phage	100.0	3.1e-21
WP_002504816.1|1682428_1685098_+	hypothetical protein	NA	A0A0N9SHX2	Staphylococcus_phage	99.9	0.0e+00
WP_002504815.1|1685204_1685606_+	hypothetical protein	NA	A0A0N9STA8	Staphylococcus_phage	100.0	4.4e-66
WP_002504814.1|1685587_1686100_+	hypothetical protein	NA	A0A0N9RZS7	Staphylococcus_phage	100.0	8.5e-46
WP_002504813.1|1686121_1686451_+|holin	phage holin	holin	A0A0N9SK62	Staphylococcus_phage	100.0	4.2e-54
WP_002504812.1|1686502_1688896_+	SGNH/GDSL hydrolase family protein	NA	A0A0N9RRL9	Staphylococcus_phage	100.0	0.0e+00
WP_002504811.1|1688972_1690475_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N9SGX6	Staphylococcus_phage	100.0	3.4e-284
WP_002504810.1|1690550_1690751_-	hypothetical protein	NA	A0A0N9RTY2	Staphylococcus_phage	100.0	1.2e-27
WP_002504809.1|1691130_1691307_-	hypothetical protein	NA	A0A0N9SK66	Staphylococcus_phage	100.0	1.4e-24
WP_002504808.1|1691445_1693092_-	hypothetical protein	NA	A0A0N9SHY1	Staphylococcus_phage	100.0	0.0e+00
WP_002504807.1|1693234_1693840_-	LPXTG cell wall anchor domain-containing protein	NA	A0A0N9STB7	Staphylococcus_phage	100.0	3.8e-77
WP_002440364.1|1694542_1694824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002457061.1|1694969_1695605_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_010959251.1|1695952_1697887_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2H4UUX5	Bodo_saltans_virus	27.2	2.4e-48
1699668:1699686	attR	AGAAAATACATATAATAAT	NA	NA	NA	NA
>prophage 1
NC_006663	Staphylococcus epidermidis RP62A plasmid pSERP, complete sequence	27310	5041	14505	27310	transposase	Streptococcus_phage(62.5%)	11	NA	NA
WP_000690637.1|5041_5620_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.9e-42
WP_001105991.1|6360_7035_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
WP_001096887.1|7687_8482_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_000627290.1|8574_9117_-	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
WP_001255866.1|9113_10022_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
WP_000662263.1|10054_10789_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_000228166.1|10769_11639_-	nucleotidyltransferase domain-containing protein	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
WP_000084169.1|11741_11948_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_001070743.1|12008_12659_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001086633.1|12668_13799_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000573642.1|13800_14505_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	35.0	1.3e-25
