assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000011825.1_ASM1182v1	NC_006448	Streptococcus thermophilus LMG 18311, complete sequence	1	629901-632113	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DEDDh,cas9,cas1,cas2,csn2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	Type II-A,Type II-B,Type II-C	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	36,36,36	0	0	NA	NA	NA:NA:NA	33,33,33	33	TypeII-A,TypeII-B,TypeII-C	cas3,DEDDh,cas9,cas1,cas2,csn2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	NA|52aa|up_5|NC_006448.1_622710_622866_-,NA	NA|183aa|up_9|NC_006448.1_618530_619079_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|454aa|up_8|NC_006448.1_619294_620656_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|277aa|up_7|NC_006448.1_620865_621696_+	cd10447, GIY-YIG_unchar_2, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria and archaea	NA|74aa|up_6|NC_006448.1_621863_622085_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|52aa|up_5|NC_006448.1_622710_622866_-	NA	NA|204aa|up_4|NC_006448.1_623138_623750_+	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140)	cas9|1123aa|up_3|NC_006448.1_624006_627375_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|304aa|up_2|NC_006448.1_627552_628464_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|108aa|up_1|NC_006448.1_628465_628789_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|351aa|up_0|NC_006448.1_628785_629838_+	pfam16813, Cas_St_Csn2, CRISPR-associated protein Csn2 subfamily St	NA|272aa|down_0|NC_006448.1_632154_632970_-	COG3689, COG3689, Predicted membrane protein [Function unknown]	NA|301aa|down_1|NC_006448.1_632969_633872_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|711aa|down_2|NC_006448.1_634235_636368_+	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|147aa|down_3|NC_006448.1_636354_636795_+	PRK04351, PRK04351, SprT family protein	NA|88aa|down_4|NC_006448.1_636861_637125_+	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]	NA|310aa|down_5|NC_006448.1_637253_638183_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|264aa|down_6|NC_006448.1_638182_638974_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|133aa|down_7|NC_006448.1_639096_639495_+	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]	NA|145aa|down_8|NC_006448.1_639507_639942_+	pfam12732, YtxH, YtxH-like protein	NA|99aa|down_9|NC_006448.1_639968_640265_-	pfam11674, DUF3270, Protein of unknown function (DUF3270)
GCF_000011825.1_ASM1182v1	NC_006448	Streptococcus thermophilus LMG 18311, complete sequence	2	863999-864323	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	cas3,DEDDh,cas9,cas1,cas2,csn2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	Type III-C,Type III-A,Type III-B,Type III-D	GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC,GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC,GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	3,4,4	4	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	cas3,DEDDh,cas9,cas1,cas2,csn2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	NA|151aa|up_7|NC_006448.1_851837_852290_+,NA	NA|299aa|up_9|NC_006448.1_847018_847915_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|346aa|up_8|NC_006448.1_849217_850255_+	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like	NA|151aa|up_7|NC_006448.1_851837_852290_+	NA	NA|255aa|up_6|NC_006448.1_852635_853400_+	cd09007, NP-I_spr0068, uncharacterized subfamily of the nucleoside phosphorylase-I family	NA|212aa|up_5|NC_006448.1_853461_854097_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|553aa|up_4|NC_006448.1_857067_858726_-	pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA)	NA|183aa|up_3|NC_006448.1_859867_860416_+	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|268aa|up_2|NC_006448.1_860657_861461_+	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed	NA|316aa|up_1|NC_006448.1_861479_862427_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	cas2|110aa|up_0|NC_006448.1_863568_863898_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|244aa|down_0|NC_006448.1_864453_865185_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas10|759aa|down_1|NC_006448.1_865165_867442_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|127aa|down_2|NC_006448.1_867445_867826_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|221aa|down_3|NC_006448.1_867825_868488_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|300aa|down_4|NC_006448.1_868489_869389_+	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm5gr7|358aa|down_5|NC_006448.1_869391_870465_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	NA|232aa|down_6|NC_006448.1_871994_872690_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|210aa|down_7|NC_006448.1_872778_873408_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|148aa|down_8|NC_006448.1_873612_874056_+	PRK06529, PRK06529, amidase; Provisional	NA|484aa|down_9|NC_006448.1_874106_875558_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]
