The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_008309	Histophilus somni 129PT, complete sequence	2007700	568710	576051	2007700		Burkholderia_phage(33.33%)	10	NA	NA
WP_011608690.1|568710_570621_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	31.3	1.4e-48
WP_041604501.1|571166_571433_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5NR91	Burkholderia_phage	43.5	2.7e-11
WP_011608692.1|571468_571864_+	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	34.5	5.6e-05
WP_011608693.1|572002_572296_+	type II toxin-antitoxin system HigB family toxin	NA	A0A0P0ZE17	Stx2-converting_phage	33.8	4.0e-08
WP_011608694.1|572308_572896_+	SocA family protein	NA	A0A139ZPG5	Marinitoga_camini_virus	29.7	5.0e-10
WP_011608695.1|572888_573335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011608696.1|573578_573782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157856871.1|574112_574274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011608697.1|574742_575204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011608698.1|575340_576051_-	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	NA	A0A2I7SAW6	Vibrio_phage	57.1	2.0e-61
>prophage 2
NC_008309	Histophilus somni 129PT, complete sequence	2007700	586301	593221	2007700	integrase	Escherichia_phage(33.33%)	7	589834:589893	591734:592231
WP_011608709.1|586301_587930_+	CTP synthase (glutamine hydrolyzing)	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	50.0	5.6e-152
WP_101812539.1|587977_589414_-	acyltransferase	NA	C6ZR20	Salmonella_phage	29.3	6.1e-17
589834:589893	attL	ACGCTTGGGAACAGAGGAAGGCAAAAGAAATCTTTATTAGCGTTTCAGAAAAGGGGTTCC	NA	NA	NA	NA
WP_041604082.1|589862_590333_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_011608712.1|590354_591281_+|integrase	site-specific integrase	integrase	A8ATM2	Listeria_phage	48.7	2.8e-79
WP_011608713.1|591293_591845_-	type I restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	26.0	1.4e-06
WP_011608714.1|592008_592530_-	hypothetical protein	NA	Q71TB7	Escherichia_phage	34.0	3.1e-19
591734:592231	attR	GGAACCCCTTTTCTGAAACGCTAATAAAGATTTCTTTTGCCTTCCTCTGTTCCCAAGCGTGAGTAAATTCGGGGAATCGTAATTTCGGTACAAGTCTTTTTTCATTGTTCATTTTGTTTTTCCTTAAATAGGGTTAAAAGTGCGGTTGGTTTTGACAGAGTATTTTATTGTGATCATCATAAAAATCTTGACAAAAGATTATCGATTAACTAATAATAACTATAGCTCATCAGCCCATGACTGAAGGAGTTACGAGGTCGTCTTTCGAGGCGACTTCAGCTTTTCTGACTTCCTACAGATTCCCAATACTTCTCATATTTCTTTCTGTATTTTCTTCGTTGATGTTCATATTCCACATAAAAAGCTGTCCAAGGTAATACAAAATCTTTACGTTTCGCAATAACAATCAAGTAGGTGAAATCAGGTAAAGCAAGATGATAACGTTCTTCGGAGCCTCTCATTTCTAGCCACCATAATACCTTTGAGTTTTTTGTAGGC	NA	NA	NA	NA
WP_011608715.1|592522_593221_-	DUF3800 domain-containing protein	NA	Q71TB8	Escherichia_phage	53.3	5.0e-65
>prophage 3
NC_008309	Histophilus somni 129PT, complete sequence	2007700	679641	686390	2007700		Caulobacter_phage(50.0%)	7	NA	NA
WP_011608790.1|679641_680220_+	TerD family protein	NA	K4JRX3	Caulobacter_phage	38.5	7.4e-30
WP_041604513.1|680393_680969_+	TerD family protein	NA	K4JRX3	Caulobacter_phage	39.2	9.0e-28
WP_011608792.1|680978_681560_+	TerD family protein	NA	K4JRX3	Caulobacter_phage	30.9	1.1e-12
WP_011608793.1|682437_683502_-	glycosyltransferase family 8 protein	NA	A0ZYL4	Archaeal_BJ1_virus	22.5	1.7e-08
WP_011608794.1|683678_684155_-	lipooligosaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_011608795.1|684276_685170_+	glycosyltransferase family 25 protein	NA	A0A1D8KNF8	Synechococcus_phage	31.2	1.8e-11
WP_011608796.1|685340_686390_-	ferric ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.5	4.0e-34
>prophage 4
NC_008309	Histophilus somni 129PT, complete sequence	2007700	1526267	1597503	2007700	terminase,transposase,integrase,capsid	Mannheimia_phage(28.57%)	72	1517451:1517467	1530070:1530086
1517451:1517467	attL	TTTTATCCAAATTTGTT	NA	NA	NA	NA
WP_011609488.1|1526267_1526666_-|terminase	terminase small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	49.1	4.9e-17
WP_011609489.1|1526740_1526947_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_011609490.1|1527310_1528012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609491.1|1528093_1529350_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	40.4	1.6e-82
WP_011609492.1|1530176_1530716_-	hypothetical protein	NA	NA	NA	NA	NA
1530070:1530086	attR	AACAAATTTGGATAAAA	NA	NA	NA	NA
WP_011609493.1|1531120_1532470_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_011609494.1|1532663_1533491_+	class II glutamine amidotransferase	NA	NA	NA	NA	NA
WP_011609495.1|1533631_1534258_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_011609496.1|1534359_1535601_+	uracil permease	NA	NA	NA	NA	NA
WP_011609497.1|1535687_1536383_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_011609498.1|1536500_1536824_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	49.0	4.3e-19
WP_011609499.1|1536988_1538098_-	methionine biosynthesis PLP-dependent protein	NA	A0A1V0SL56	Klosneuvirus	24.7	6.2e-17
WP_041604317.1|1538807_1539662_+	ParA family protein	NA	NA	NA	NA	NA
WP_011609501.1|1539654_1541031_+	replicative DNA helicase	NA	A0A077SK18	Escherichia_phage	45.0	8.6e-93
WP_011609502.1|1541020_1542727_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_011609503.1|1543109_1543763_+	DUF2057 domain-containing protein	NA	NA	NA	NA	NA
WP_011609504.1|1543826_1544285_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_011609505.1|1544309_1546475_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_011609506.1|1546476_1546983_-	endonuclease SmrB	NA	NA	NA	NA	NA
WP_011609507.1|1547067_1548021_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_011609508.1|1548091_1549144_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_011609509.1|1549143_1549482_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
WP_011609510.1|1549524_1550109_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_011609511.1|1550169_1550805_-	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	38.5	1.6e-22
WP_011609512.1|1550805_1551975_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_011609513.1|1552057_1552846_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_011609514.1|1552859_1553315_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_041604320.1|1553398_1554286_-	DUF535 domain-containing protein	NA	NA	NA	NA	NA
WP_011609516.1|1554395_1555730_-	argininosuccinate synthase	NA	A0A140XAJ5	Dickeya_phage	80.2	3.1e-55
WP_011609517.1|1555822_1556653_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_041604322.1|1556719_1557580_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.0	3.9e-51
WP_011609519.1|1558146_1558773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609520.1|1558772_1559306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101812544.1|1559324_1560533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609522.1|1560644_1560962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049752237.1|1560978_1562187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609524.1|1562321_1562606_-	hypothetical protein	NA	A0A0M3LNN9	Mannheimia_phage	68.3	7.0e-26
WP_041604562.1|1562581_1562890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609527.1|1565541_1567521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609528.1|1567584_1568034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157665517.1|1568011_1568185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609529.1|1568243_1568633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609530.1|1568629_1569076_-	SAP domain-containing protein	NA	NA	NA	NA	NA
WP_011609531.1|1569137_1570133_-|capsid	N4-gp56 family major capsid protein	capsid	NA	NA	NA	NA
WP_011609532.1|1570158_1571022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609533.1|1571099_1571282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609534.1|1571379_1571682_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_101812534.1|1580281_1580671_-	hypothetical protein	NA	A0A1B1P9D9	Acinetobacter_phage	38.7	1.9e-13
WP_157856875.1|1580685_1580832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080502959.1|1580931_1581096_-	photosystem I reaction center subunit PsaK	NA	NA	NA	NA	NA
WP_041604325.1|1581206_1583384_-	hypothetical protein	NA	S4S2T1	Puniceispirillum_phage	25.9	2.0e-43
WP_011609539.1|1583385_1584933_-	hypothetical protein	NA	A0A1B1IVN4	uncultured_Mediterranean_phage	42.0	6.4e-97
WP_011609540.1|1584932_1585628_-|terminase	terminase	terminase	NA	NA	NA	NA
WP_041604566.1|1585652_1585796_-	hypothetical protein	NA	A0A0M3LNX0	Mannheimia_phage	69.8	9.9e-13
WP_011609541.1|1585824_1586151_-	DUF2570 family protein	NA	NA	NA	NA	NA
WP_011609542.1|1586123_1586660_-	lysozyme	NA	Q19UR6	Mannheimia_phage	50.3	5.2e-46
WP_011609543.1|1586652_1586889_-	hypothetical protein	NA	A0A0M3LR95	Mannheimia_phage	71.8	1.2e-23
WP_041604327.1|1587176_1588313_-|transposase	transposase	transposase	A0A1B0VCD8	Salmonella_phage	56.4	3.0e-120
WP_011609545.1|1588359_1588776_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	64.2	1.9e-48
WP_011609547.1|1589384_1589789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341702.1|1589778_1590357_-	recombination protein NinG	NA	A0A0M3LTG3	Mannheimia_phage	52.4	1.6e-45
WP_011609549.1|1590547_1590733_+	type II toxin-antitoxin system HicA family toxin	NA	A0A0D4DC32	Acinetobacter_phage	66.7	1.1e-14
WP_011609550.1|1590755_1591169_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0D4DCG1	Acinetobacter_phage	55.6	2.7e-34
WP_011609551.1|1591255_1592215_-	hypothetical protein	NA	Q8HA04	Enterobacteria_phage	59.4	1.7e-87
WP_011609552.1|1592578_1593193_+	hypothetical protein	NA	B6SD57	Bacteriophage	52.1	8.1e-27
WP_011609553.1|1593244_1593697_-	DUF1367 family protein	NA	A0A0M3LPN2	Mannheimia_phage	81.3	2.4e-68
WP_011609554.1|1593709_1594243_-	phage N-6-adenine-methyltransferase	NA	A0A0M3LNW2	Mannheimia_phage	64.3	2.9e-65
WP_011609555.1|1594257_1594950_-	replication protein P	NA	A0A077KCC8	Edwardsiella_phage	35.4	5.5e-24
WP_011609557.1|1595734_1595983_-	hypothetical protein	NA	A0A0M3LR73	Mannheimia_phage	75.0	8.3e-23
WP_011609558.1|1596025_1596478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609559.1|1596522_1596729_-	helix-turn-helix transcriptional regulator	NA	A0A0N7C2U7	Escherichia_phage	50.0	4.9e-13
WP_011609560.1|1596867_1597503_+	LexA family transcriptional repressor	NA	G9L676	Escherichia_phage	45.6	7.8e-41
>prophage 5
NC_008309	Histophilus somni 129PT, complete sequence	2007700	1601520	1612962	2007700	integrase	Mannheimia_phage(33.33%)	14	1603149:1603162	1616019:1616032
WP_011609567.1|1601520_1601718_+	type II toxin-antitoxin system HicA family toxin	NA	A0A0M4RCZ9	Salmonella_phage	54.7	1.6e-13
WP_011609568.1|1602087_1602576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011609569.1|1602929_1603595_+	Bro-N domain-containing protein	NA	Q7Y5X0	Haemophilus_phage	70.4	7.1e-45
1603149:1603162	attL	TCATTACGTGGCAC	NA	NA	NA	NA
WP_011609570.1|1603681_1603966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011609571.1|1603962_1604400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011609572.1|1604396_1604696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011609573.1|1604707_1605643_+	recombinase	NA	A0A0M3LNU3	Mannheimia_phage	76.3	7.0e-131
WP_011609574.1|1605635_1606304_+	hypothetical protein	NA	A0A0M3LP90	Mannheimia_phage	74.4	1.3e-94
WP_011609575.1|1606353_1607412_+	hypothetical protein	NA	A0A0M3LPL3	Mannheimia_phage	75.0	1.5e-12
WP_011609576.1|1607440_1608538_+	DNA cytosine methyltransferase	NA	Q6V7R9	Burkholderia_virus	51.8	4.7e-94
WP_011609577.1|1608570_1609368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011609578.1|1609377_1609563_+	AlpA family transcriptional regulator	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	43.6	1.7e-09
WP_011609579.1|1609524_1610766_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	41.5	8.8e-89
WP_011609580.1|1611222_1612962_+	C4-dicarboxylic acid transporter DauA	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.7	1.5e-33
1616019:1616032	attR	GTGCCACGTAATGA	NA	NA	NA	NA
