assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000011705.1_ASM1170v1	NC_006349	Burkholderia mallei ATCC 23344 chromosome 2, complete sequence	1	124506-124598	1	CRISPRCasFinder	no		csa3,cas3	Orphan	TCGCCGCCGCGCGCGACGACGCGC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3	NA,NA|172aa|down_3|NC_006349.2_129195_129711_+,NA|170aa|down_4|NC_006349.2_129768_130278_-	NA|506aa|up_9|NC_006349.2_113612_115130_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|393aa|up_8|NC_006349.2_115762_116941_-	PRK07058, PRK07058, acetate/propionate family kinase	NA|468aa|up_7|NC_006349.2_116937_118341_-	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated	NA|598aa|up_6|NC_006349.2_118351_120145_-	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I	NA|535aa|up_5|NC_006349.2_120505_122110_+	PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional	NA|152aa|up_4|NC_006349.2_122099_122555_+	PRK13447, PRK13447, F0F1 ATP synthase subunit epsilon; Provisional	NA|164aa|up_3|NC_006349.2_122551_123043_+	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter	NA|103aa|up_2|NC_006349.2_123035_123344_+	TIGR03165, F1F0_chp_2, F1/F0 ATPase, Methanosarcina type, subunit 2	NA|234aa|up_1|NC_006349.2_123340_124042_+	PRK13421, PRK13421, F0F1 ATP synthase subunit A; Provisional	NA|83aa|up_0|NC_006349.2_124038_124287_+	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional	NA|671aa|down_0|NC_006349.2_125033_127046_+	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional	NA|283aa|down_1|NC_006349.2_127042_127891_+	pfam00231, ATP-synt, ATP synthase	NA|342aa|down_2|NC_006349.2_128105_129131_+	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)	NA|172aa|down_3|NC_006349.2_129195_129711_+	NA	NA|170aa|down_4|NC_006349.2_129768_130278_-	NA	NA|535aa|down_5|NC_006349.2_130779_132384_+	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|612aa|down_6|NC_006349.2_132727_134563_-	PRK13557, PRK13557, histidine kinase; Provisional	NA|375aa|down_7|NC_006349.2_134712_135837_-	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|1072aa|down_8|NC_006349.2_135839_139055_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|509aa|down_9|NC_006349.2_140117_141644_-	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein
GCF_000011705.1_ASM1170v1	NC_006349	Burkholderia mallei ATCC 23344 chromosome 2, complete sequence	2	1076602-1076764	1	PILER-CR	no		csa3,cas3	Orphan	GGCGGGCCGGCCGCCG---------------------------CGCGGGCG	51	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,DinG,WYL,cas3	NA|95aa|up_4|NC_006349.2_1072182_1072467_-,NA|47aa|up_3|NC_006349.2_1072864_1073005_-,NA|99aa|down_7|NC_006349.2_1089588_1089885_+	NA|465aa|up_9|NC_006349.2_1063715_1065110_-	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|230aa|up_8|NC_006349.2_1065106_1065796_-	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator	NA|1078aa|up_7|NC_006349.2_1065802_1069036_-	TIGR00914, Nickel-cobalt-cadmium_resistance_protein_NccA, heavy metal efflux pump, CzcA family	NA|490aa|up_6|NC_006349.2_1069081_1070551_-	TIGR00999, Nickel-cobalt-cadmium_resistance_protein_NccB, Membrane Fusion Protein cluster 2 (function with RND porters)	NA|462aa|up_5|NC_006349.2_1070561_1071947_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|95aa|up_4|NC_006349.2_1072182_1072467_-	NA	NA|47aa|up_3|NC_006349.2_1072864_1073005_-	NA	NA|163aa|up_2|NC_006349.2_1073657_1074146_-	pfam04008, Adenosine_kin, Adenosine specific kinase	NA|162aa|up_1|NC_006349.2_1074472_1074958_+	cd04332, YbaK_like, YbaK-like	NA|452aa|up_0|NC_006349.2_1075225_1076581_+	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter	NA|203aa|down_0|NC_006349.2_1076880_1077489_+	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|667aa|down_1|NC_006349.2_1077613_1079614_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|589aa|down_2|NC_006349.2_1080986_1082753_+	COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|224aa|down_3|NC_006349.2_1082883_1083555_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|366aa|down_4|NC_006349.2_1083705_1084803_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1034aa|down_5|NC_006349.2_1084799_1087901_+	PRK09579, PRK09579, multidrug efflux RND transporter permease subunit	NA|513aa|down_6|NC_006349.2_1088035_1089574_+	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA|99aa|down_7|NC_006349.2_1089588_1089885_+	NA	NA|206aa|down_8|NC_006349.2_1089930_1090548_+	PRK00393, ribA, GTP cyclohydrolase II RibA	NA|566aa|down_9|NC_006349.2_1090544_1092242_+	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment
GCF_000011705.1_ASM1170v1	NC_006349	Burkholderia mallei ATCC 23344 chromosome 2, complete sequence	3	2214654-2214799	2,2	PILER-CR,CRISPRCasFinder	no		csa3,cas3	Orphan	GCAGAGGCGCCGCCGCCGGAATACCCGATCATCGGGATGCTCGATCGCCGAAG,CGGAATGCCCGATCATCGGGATGC	53,24	0	0	NA	NA	NA:NA	2,1	2	Orphan	DEDDh,csa3,DinG,WYL,cas3	NA|66aa|up_3|NC_006349.2_2208722_2208920_+,NA|99aa|down_3|NC_006349.2_2220722_2221019_+,NA|125aa|down_5|NC_006349.2_2224009_2224384_+	NA|484aa|up_9|NC_006349.2_2200196_2201648_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|348aa|up_8|NC_006349.2_2201649_2202693_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|411aa|up_7|NC_006349.2_2202698_2203931_-	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]	NA|147aa|up_6|NC_006349.2_2205183_2205624_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|372aa|up_5|NC_006349.2_2205958_2207074_-	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport	NA|312aa|up_4|NC_006349.2_2207371_2208307_+	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold	NA|66aa|up_3|NC_006349.2_2208722_2208920_+	NA	NA|633aa|up_2|NC_006349.2_2208979_2210878_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|758aa|up_1|NC_006349.2_2211188_2213462_-	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase	NA|132aa|up_0|NC_006349.2_2213594_2213990_-	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms]	NA|422aa|down_0|NC_006349.2_2215356_2216622_+	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular	NA|614aa|down_1|NC_006349.2_2216870_2218712_+	PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional	NA|601aa|down_2|NC_006349.2_2218786_2220589_+	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown]	NA|99aa|down_3|NC_006349.2_2220722_2221019_+	NA	NA|611aa|down_4|NC_006349.2_2222144_2223977_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|125aa|down_5|NC_006349.2_2224009_2224384_+	NA	NA|150aa|down_6|NC_006349.2_2224356_2224806_-	cd17775, CBS_pair_bact_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains  present in bacteria and archaea	NA|218aa|down_7|NC_006349.2_2225259_2225913_+	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC	NA|145aa|down_8|NC_006349.2_2225980_2226415_-	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|377aa|down_9|NC_006349.2_2226820_2227951_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane
GCF_000011705.1_ASM1170v1	NC_006348	Burkholderia mallei ATCC 23344 chromosome 1, complete sequence	1	3187717-3187909	1	PILER-CR	no		DEDDh,csa3,DinG,WYL,cas3	Orphan	CGCCGCCGCCACCGCCGCCGCCACCGCCGCCACCGCCGCC	40	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,DinG,WYL,cas3	NA|137aa|up_9|NC_006348.1_3175567_3175978_-,NA	NA|137aa|up_9|NC_006348.1_3175567_3175978_-	NA	NA|251aa|up_8|NC_006348.1_3176109_3176862_-	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|399aa|up_7|NC_006348.1_3177176_3178373_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|312aa|up_6|NC_006348.1_3178720_3179656_-	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional	NA|264aa|up_5|NC_006348.1_3180109_3180901_-	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains	NA|379aa|up_4|NC_006348.1_3180916_3182053_-	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion]	NA|275aa|up_3|NC_006348.1_3182043_3182868_-	pfam06764, DUF1223, Protein of unknown function (DUF1223)	NA|102aa|up_2|NC_006348.1_3183028_3183334_-	TIGR02953, conserved_hypothetical_protein, pentapeptide MXKDX repeat protein	NA|644aa|up_1|NC_006348.1_3183983_3185915_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|374aa|up_0|NC_006348.1_3186053_3187174_-	pfam13683, rve_3, Integrase core domain	NA|396aa|down_0|NC_006348.1_3188364_3189552_-	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily	NA|956aa|down_1|NC_006348.1_3189765_3192633_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|362aa|down_2|NC_006348.1_3192851_3193937_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|294aa|down_3|NC_006348.1_3194232_3195114_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|286aa|down_4|NC_006348.1_3195165_3196023_-	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|195aa|down_5|NC_006348.1_3196035_3196620_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|670aa|down_6|NC_006348.1_3197359_3199369_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|328aa|down_7|NC_006348.1_3199496_3200480_+	PRK10892, PRK10892, arabinose-5-phosphate isomerase KdsD	NA|180aa|down_8|NC_006348.1_3200479_3201019_+	COG1778, COG1778, Low specificity phosphatase (HAD superfamily) [General function prediction only]	NA|205aa|down_9|NC_006348.1_3201024_3201639_+	TIGR04409, LptC_YrbK, LPS export ABC transporter periplasmic protein LptC
