The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_004463	Bradyrhizobium diazoefficiens USDA 110, complete genome	9105828	1429126	1436216	9105828		Salmonella_phage(16.67%)	6	NA	NA
WP_011084134.1|1429126_1429591_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.3	8.5e-45
WP_011084135.1|1429710_1430196_-	peroxiredoxin	NA	M1I839	Pelagibacter_phage	45.8	6.8e-21
WP_011084136.1|1430304_1430859_-	DUF924 domain-containing protein	NA	A0A1V0SIY0	Klosneuvirus	31.8	1.7e-15
WP_011084137.1|1430874_1432560_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	26.9	6.9e-44
WP_011084138.1|1432753_1434217_-	penicillin-binding protein	NA	B6DZZ7	Stx2-converting_phage	35.1	3.0e-27
WP_011084139.1|1434407_1436216_-	glucan ABC transporter ATP-binding protein/ permease	NA	W8CYL7	Bacillus_phage	25.0	3.8e-32
>prophage 2
NC_004463	Bradyrhizobium diazoefficiens USDA 110, complete genome	9105828	1754830	1906013	9105828	transposase,integrase	Paenibacillus_phage(16.67%)	93	1780120:1780138	1798755:1798773
WP_085971921.1|1754830_1755591_-|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
WP_038968054.1|1756239_1757574_+	NtaA/DmoA family FMN-dependent monooxygenase	NA	NA	NA	NA	NA
WP_011084417.1|1757606_1759295_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011084418.1|1759291_1760254_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011084419.1|1760250_1761132_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014498066.1|1761128_1762856_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	5.3e-15
WP_014498065.1|1763144_1763327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109866565.1|1764823_1765953_-|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	1.1e-18
WP_014498064.1|1766416_1767253_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_011084426.1|1767236_1768103_+	PAS-domain containing protein	NA	NA	NA	NA	NA
WP_011084433.1|1774920_1775604_+	conjugal transfer protein TrbF	NA	NA	NA	NA	NA
WP_014498060.1|1775600_1776635_+	P-type conjugative transfer protein TrbG	NA	NA	NA	NA	NA
WP_011084435.1|1776631_1777834_+	TrbI/VirB10 family protein	NA	NA	NA	NA	NA
WP_011084436.1|1777839_1778076_+	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
WP_162131539.1|1778188_1778383_-	hypothetical protein	NA	NA	NA	NA	NA
1780120:1780138	attL	GCAGTGCGGATGCGGCAGG	NA	NA	NA	NA
WP_011084444.1|1784842_1787959_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_011084445.1|1788233_1789241_-	GDP-L-fucose synthase	NA	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	51.7	3.7e-85
WP_014498053.1|1789212_1790298_-	GDP-mannose 4,6-dehydratase	NA	M1HGM9	Acanthocystis_turfacea_Chlorella_virus	64.7	3.7e-131
WP_011084447.1|1791630_1793457_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	40.0	1.2e-105
WP_038967990.1|1793777_1794011_-	cold shock domain-containing protein	NA	NA	NA	NA	NA
WP_011084449.1|1794850_1795207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084450.1|1795583_1795994_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1X9SGU9	Bradyrhizobium_phage	36.6	1.1e-06
WP_011084451.1|1796011_1796329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080584307.1|1796893_1797082_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2L1IV28	Escherichia_phage	36.7	1.6e-05
WP_018647863.1|1798028_1798244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026312792.1|1799901_1800390_+	hypothetical protein	NA	NA	NA	NA	NA
1798755:1798773	attR	CCTGCCGCATCCGCACTGC	NA	NA	NA	NA
WP_011084456.1|1801131_1801842_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	53.1	1.4e-62
WP_011084458.1|1803355_1804162_-	hypothetical protein	NA	A0A023NHS3	Nitrincola_phage	30.1	1.0e-05
WP_011084459.1|1804436_1805243_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_014498042.1|1805579_1805771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076611612.1|1806182_1806962_+|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	34.7	2.4e-07
WP_011084462.1|1807012_1808362_-|transposase	IS701-like element ISBj6 family transposase	transposase	NA	NA	NA	NA
WP_011084464.1|1809261_1810800_+	DUF1521 domain-containing protein	NA	NA	NA	NA	NA
WP_011084467.1|1811514_1811718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038968041.1|1812346_1812646_-	hypothetical protein	NA	A0A291AUP1	Sinorhizobium_phage	35.8	1.8e-08
WP_011084470.1|1813084_1813795_+|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_011084471.1|1814083_1814890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084472.1|1815213_1816209_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_035668701.1|1816594_1816795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018648886.1|1819124_1819571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084477.1|1820708_1821536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038968076.1|1821459_1822125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084479.1|1822114_1822756_+	DUF4194 domain-containing protein	NA	NA	NA	NA	NA
WP_011084480.1|1822752_1826253_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_011084481.1|1826249_1827455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084482.1|1827441_1828317_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_035668232.1|1828319_1828637_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011084484.1|1828790_1829927_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011084485.1|1829913_1831395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084486.1|1831407_1832169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084487.1|1832165_1833344_+	DUF1488 domain-containing protein	NA	NA	NA	NA	NA
WP_162131541.1|1834227_1834389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084489.1|1834504_1835266_-|transposase	IS6-like element ISBj7 family transposase	transposase	NA	NA	NA	NA
WP_011084490.1|1835509_1837372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084494.1|1838542_1839205_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_085971921.1|1839370_1840130_+|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
WP_011084496.1|1840603_1840894_+	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
WP_011084497.1|1840890_1841205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498007.1|1842140_1842329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035668747.1|1842654_1844034_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_011084500.1|1844758_1845262_-	type II toxin-antitoxin system YhaV family toxin	NA	NA	NA	NA	NA
WP_014498004.1|1845258_1845600_-	type II toxin-antitoxin system PrlF family antitoxin	NA	NA	NA	NA	NA
WP_011084508.1|1854586_1854844_-	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_014497999.1|1855413_1855635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084509.1|1856159_1856504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084511.1|1857054_1857411_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_011084512.1|1857464_1859012_+|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	38.6	2.1e-84
WP_011084514.1|1860497_1861562_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084515.1|1861609_1863406_-	recombinase family protein	NA	NA	NA	NA	NA
WP_011084516.1|1863825_1866078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162494197.1|1869848_1870676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084518.1|1871025_1872576_+|transposase	IS21-like element ISBj11 family transposase	transposase	NA	NA	NA	NA
WP_011084519.1|1872536_1873382_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	35.0	1.1e-34
WP_011084521.1|1873789_1874368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038968105.1|1876448_1877717_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	5.5e-94
WP_014497989.1|1878514_1878901_-	response regulator	NA	NA	NA	NA	NA
WP_011084526.1|1878985_1879669_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011084527.1|1879665_1882335_-	PAS domain S-box protein	NA	A0A1V0SGX0	Hokovirus	25.0	1.9e-08
WP_011084514.1|1883213_1884278_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084529.1|1885234_1886551_-	C4-dicarboxylate transporter DctA	NA	NA	NA	NA	NA
WP_011084531.1|1888915_1890007_+	hydrogenase small subunit	NA	NA	NA	NA	NA
WP_011084532.1|1890020_1891811_+	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA	NA
WP_014497983.1|1891815_1892508_+	Ni/Fe-hydrogenase, b-type cytochrome subunit	NA	NA	NA	NA	NA
WP_011084536.1|1893143_1893434_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_011084538.1|1894311_1894863_+	hydrogenase expression/formation protein	NA	NA	NA	NA	NA
WP_011084541.1|1896044_1896386_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA	NA
WP_085967575.1|1897234_1898363_+|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
WP_011084544.1|1898647_1900393_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_028154318.1|1900389_1901532_+	hydrogenase formation protein HypD	NA	NA	NA	NA	NA
WP_011084546.1|1901528_1902575_+	hydrogenase expression/formation protein HypE	NA	NA	NA	NA	NA
WP_011084547.1|1902959_1904072_+	alanine dehydrogenase	NA	NA	NA	NA	NA
WP_011084548.1|1904610_1904805_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_011084549.1|1904948_1906013_+|transposase	IS630-like element ISRj1 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NC_004463	Bradyrhizobium diazoefficiens USDA 110, complete genome	9105828	1937433	2081152	9105828	transposase	Paenibacillus_phage(16.67%)	91	NA	NA
WP_038968105.1|1937433_1938702_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	5.5e-94
WP_014497956.1|1938758_1939868_-	molybdenum ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_158516560.1|1940706_1941015_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011084591.1|1941011_1941365_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_011084592.1|1941437_1943042_+|transposase	IS66-like element ISBj7 family transposase	transposase	A0A218MNE7	uncultured_virus	33.5	1.8e-65
WP_161170740.1|1944808_1945105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084599.1|1947657_1948377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084600.1|1948431_1949181_-	hypothetical protein	NA	A0A1X9SH03	Bradyrhizobium_phage	43.6	4.4e-43
WP_011084606.1|1953625_1954048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084608.1|1954615_1955206_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_011084609.1|1955236_1957336_-	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA	NA
WP_011084610.1|1957345_1957774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084611.1|1957776_1958313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084612.1|1958346_1959240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497948.1|1959356_1959548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084613.1|1959590_1959899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497947.1|1959996_1960557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084615.1|1960807_1962262_+	DUF1521 domain-containing protein	NA	NA	NA	NA	NA
WP_011084549.1|1962416_1963481_+|transposase	IS630-like element ISRj1 family transposase	transposase	NA	NA	NA	NA
WP_011084616.1|1964051_1964255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161966260.1|1964671_1964848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171463834.1|1965404_1965995_-	nodulation protein NolW	NA	NA	NA	NA	NA
WP_026312858.1|1966279_1966780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084621.1|1966788_1967652_+	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA	NA
WP_011084622.1|1967663_1968302_+	nodulation protein	NA	NA	NA	NA	NA
WP_011084623.1|1968298_1968919_+	type III secretion system stator protein SctL	NA	NA	NA	NA	NA
WP_011084624.1|1968915_1970271_+	type III secretion system ATPase SctN	NA	NA	NA	NA	NA
WP_011084625.1|1970246_1970783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084626.1|1970779_1971901_+	type III secretion system cytoplasmic ring protein SctQ	NA	NA	NA	NA	NA
WP_011084627.1|1971893_1972559_+	type III secretion system export apparatus subunit SctR	NA	NA	NA	NA	NA
WP_011084628.1|1972561_1972837_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
WP_011084629.1|1972847_1973669_+	type III secretion system export apparatus subunit SctT	NA	NA	NA	NA	NA
WP_011084630.1|1973665_1974703_+	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_085971921.1|1974712_1975472_-|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
WP_011084514.1|1979043_1980108_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084637.1|1981111_1981513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084638.1|1982347_1982554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084639.1|1982683_1984018_-|transposase	IS5-like element ISBj2_B family transposase	transposase	K4ICS3	Acidithiobacillus_phage	41.6	2.1e-40
WP_011084760.1|1989090_1989420_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_011084646.1|1992181_1994497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084647.1|1994692_1995355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018647881.1|1995365_1996820_-	type II and III secretion system protein family protein	NA	NA	NA	NA	NA
WP_011084649.1|1996846_1997536_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011084652.1|1999549_2000617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084653.1|2001215_2001650_+	VirK family protein	NA	NA	NA	NA	NA
WP_014497924.1|2002112_2003021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084657.1|2004427_2005909_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_011084658.1|2006093_2006975_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_011084659.1|2007525_2008767_+	cytochrome P450	NA	NA	NA	NA	NA
WP_011084660.1|2009193_2011437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084661.1|2011767_2012778_-|transposase	IS481 family transposase	transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	64.8	1.1e-126
WP_011084662.1|2012920_2013214_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011084664.1|2013797_2014181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084665.1|2014288_2014834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084668.1|2015973_2016516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084669.1|2017069_2017276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171463743.1|2017665_2019012_-	MFS transporter	NA	NA	NA	NA	NA
WP_011084675.1|2022323_2022899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084678.1|2025054_2026863_-	outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_109866547.1|2027245_2028005_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	1.2e-08
WP_011084680.1|2028744_2029161_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_011084682.1|2029845_2031174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084684.1|2032580_2033195_+	J domain-containing protein	NA	NA	NA	NA	NA
WP_011084685.1|2034318_2035080_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011084688.1|2037373_2038828_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_011084689.1|2039512_2039788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497906.1|2039923_2040094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161966258.1|2041734_2041953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018645270.1|2042386_2043697_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011084695.1|2043766_2044729_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_011084696.1|2044741_2045602_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_011084697.1|2045598_2046540_+	ribokinase	NA	NA	NA	NA	NA
WP_011084698.1|2046536_2047307_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_011084699.1|2047299_2048127_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_011084700.1|2048126_2049239_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	36.5	2.3e-24
WP_011084701.1|2049192_2051052_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_161966257.1|2051056_2051668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084703.1|2052098_2053610_-|transposase	ISNCY-like element ISBj12 family transposase	transposase	NA	NA	NA	NA
WP_011084519.1|2053723_2054569_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	35.0	1.1e-34
WP_011084704.1|2054529_2056068_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_018648284.1|2056994_2057228_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_026312873.1|2059734_2061480_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
WP_018648285.1|2061536_2061707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018648286.1|2062411_2062999_-	GNAT family N-acetyltransferase	NA	C5MKY6	Human_cytomegalovirus	26.9	8.6e-10
WP_011084514.1|2066221_2067286_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084715.1|2067303_2068140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084718.1|2069704_2071180_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	3.0e-27
WP_080668322.1|2073070_2073403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084720.1|2073540_2074245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018648597.1|2074356_2074788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109866565.1|2080023_2081152_+|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	1.1e-18
>prophage 4
NC_004463	Bradyrhizobium diazoefficiens USDA 110, complete genome	9105828	2118639	2163800	9105828	transposase	Acidithiobacillus_phage(50.0%)	30	NA	NA
WP_011084757.1|2118639_2119986_-|transposase	IS5-like element ISBj5_B family transposase	transposase	K4ICS3	Acidithiobacillus_phage	43.4	8.5e-45
WP_011084759.1|2120575_2122333_-	recombinase family protein	NA	A0A1B2LRQ3	Wolbachia_phage	32.5	7.9e-67
WP_011084760.1|2122473_2122803_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_011084761.1|2122937_2123534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084764.1|2124346_2125138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162130978.1|2126115_2126286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154694111.1|2126402_2126543_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084771.1|2128327_2130646_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_011084772.1|2130851_2131151_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_014497843.1|2131231_2131387_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011084776.1|2133479_2133707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084777.1|2134020_2136000_-	RiPP maturation radical SAM C-methyltransferase	NA	NA	NA	NA	NA
WP_011084778.1|2136700_2137093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026312699.1|2137139_2137607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084781.1|2138323_2138689_-	Nif11 family protein	NA	NA	NA	NA	NA
WP_011084785.1|2140148_2141468_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_011084786.1|2141467_2141719_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011084788.1|2142163_2143720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084789.1|2143709_2144348_+	DUF4194 domain-containing protein	NA	NA	NA	NA	NA
WP_011084790.1|2144344_2147779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084791.1|2147781_2148951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084792.1|2149438_2149756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084793.1|2150473_2152006_+	polygalacturonase	NA	NA	NA	NA	NA
WP_011084794.1|2152223_2153264_+	pectinesterase	NA	NA	NA	NA	NA
WP_011084519.1|2155391_2156237_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	35.0	1.1e-34
WP_011084518.1|2156197_2157748_-|transposase	IS21-like element ISBj11 family transposase	transposase	NA	NA	NA	NA
WP_018647405.1|2158085_2159030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084757.1|2161012_2162359_-|transposase	IS5-like element ISBj5_B family transposase	transposase	K4ICS3	Acidithiobacillus_phage	43.4	8.5e-45
WP_014497829.1|2162776_2163412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084799.1|2163419_2163800_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 5
NC_004463	Bradyrhizobium diazoefficiens USDA 110, complete genome	9105828	2244816	2315030	9105828	transposase,tRNA,integrase	Acinetobacter_phage(12.5%)	54	2281443:2281459	2323252:2323268
WP_011084514.1|2244816_2245881_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084875.1|2248810_2249869_+	fatty acid desaturase family protein	NA	NA	NA	NA	NA
WP_011084876.1|2249865_2250681_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA	NA
WP_014497774.1|2250811_2251714_+	DMT family transporter	NA	NA	NA	NA	NA
WP_011084878.1|2251710_2252997_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_011084879.1|2252996_2254334_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_011084882.1|2257306_2260117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084883.1|2260445_2260733_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011084884.1|2260729_2261203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497769.1|2261873_2262470_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.5	5.8e-46
WP_038967940.1|2262466_2263861_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	34.7	1.9e-47
WP_011084888.1|2264014_2264332_-	Dabb family protein	NA	NA	NA	NA	NA
WP_011084889.1|2264467_2265103_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011084890.1|2265217_2266213_+	biotin synthase BioB	NA	NA	NA	NA	NA
WP_011084891.1|2266262_2266616_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_011084892.1|2266692_2267847_+	8-amino-7-oxononanoate synthase	NA	G9E4Q1	Emiliania_huxleyi_virus	28.2	1.9e-21
WP_011084893.1|2267843_2268479_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
WP_011084894.1|2268475_2269741_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.6	2.9e-10
WP_028153345.1|2270987_2271866_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	36.5	9.4e-45
WP_011084897.1|2271869_2272721_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_011084898.1|2272733_2273093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497761.1|2273761_2273962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497760.1|2274305_2274509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084900.1|2274905_2275184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084901.1|2275916_2276303_+	ectoine synthase	NA	NA	NA	NA	NA
WP_182869657.1|2276427_2276976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_182869858.1|2277585_2286780_+	amino acid adenylation domain-containing protein	NA	A0A2K9L3I8	Tupanvirus	27.5	1.8e-154
2281443:2281459	attL	GATCTGGATGCAGGACG	NA	NA	NA	NA
WP_026312933.1|2288402_2289086_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_018648598.1|2289623_2289890_+	DUF3551 domain-containing protein	NA	NA	NA	NA	NA
WP_011084907.1|2290337_2290568_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011084908.1|2290881_2291367_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_011084909.1|2291363_2291684_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_011084910.1|2291696_2292821_+	DUF3800 domain-containing protein	NA	U5N3F3	Enterobacteria_phage	39.7	2.0e-71
WP_085967575.1|2293085_2294215_-|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
WP_011084912.1|2294569_2295139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084913.1|2295184_2295715_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_011084914.1|2296009_2296216_-	cold-shock protein	NA	NA	NA	NA	NA
WP_011084916.1|2297472_2297991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161966513.1|2298519_2299074_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_011084918.1|2299070_2299853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171463836.1|2300762_2301671_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_011084921.1|2302541_2302826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162494059.1|2303061_2303565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497739.1|2304734_2304938_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038968004.1|2305284_2306610_+	lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein	NA	NA	NA	NA	NA
WP_011084926.1|2306606_2307911_+	MFS transporter	NA	NA	NA	NA	NA
WP_011084927.1|2307876_2308656_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_011084928.1|2308680_2309010_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_011084929.1|2309011_2310589_+|tRNA	class I tRNA ligase family protein	tRNA	NA	NA	NA	NA
WP_011084930.1|2310608_2311742_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_155256178.1|2312148_2312316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497735.1|2312670_2313291_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_014497734.1|2313290_2314511_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_097670033.1|2314721_2315030_-|transposase	transposase	transposase	NA	NA	NA	NA
2323252:2323268	attR	GATCTGGATGCAGGACG	NA	NA	NA	NA
>prophage 6
NC_004463	Bradyrhizobium diazoefficiens USDA 110, complete genome	9105828	3219228	3228815	9105828		Escherichia_phage(42.86%)	8	NA	NA
WP_011085709.1|3219228_3219960_+	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	28.6	3.9e-12
WP_011085710.1|3219943_3220648_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.2	3.8e-12
WP_038965772.1|3220809_3221490_-	aldolase	NA	A0A077SK32	Escherichia_phage	49.3	4.6e-47
WP_011085712.1|3221594_3222512_+	NAD-binding protein	NA	A0A077SLF7	Escherichia_phage	48.3	7.0e-67
WP_011085713.1|3222528_3223311_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_011085714.1|3223307_3224582_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	42.0	6.3e-74
WP_011085715.1|3224752_3226444_+	MCP four helix bundle domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.8	2.4e-12
WP_011085716.1|3226511_3228815_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	39.1	6.6e-13
>prophage 7
NC_004463	Bradyrhizobium diazoefficiens USDA 110, complete genome	9105828	5254010	5264192	9105828	tRNA	uncultured_Mediterranean_phage(88.89%)	12	NA	NA
WP_011087511.1|5254010_5255396_-	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	NA	Q8SBN9	Clostridium_phage	42.7	4.8e-19
WP_011087512.1|5255505_5256156_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.0	1.3e-27
WP_011087513.1|5256397_5256769_+	response regulator	NA	NA	NA	NA	NA
WP_028171844.1|5256772_5257540_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	37.6	1.8e-36
WP_011087515.1|5257728_5258091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011087516.1|5258185_5259517_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.9	1.1e-97
WP_011087517.1|5259727_5260540_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	48.4	4.2e-55
WP_011087518.1|5260536_5261064_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_011087519.1|5261153_5261387_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	63.6	5.4e-08
WP_028171841.1|5261553_5262306_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.7	4.0e-44
WP_011087521.1|5262327_5263167_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	37.1	1.1e-31
WP_011087522.1|5263163_5264192_-	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	41.2	1.0e-21
>prophage 8
NC_004463	Bradyrhizobium diazoefficiens USDA 110, complete genome	9105828	5692263	5749006	9105828	transposase,tRNA,integrase,protease	Bradyrhizobium_phage(22.22%)	60	5717827:5717843	5754156:5754172
WP_011087894.1|5692263_5692755_-|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
WP_011087895.1|5692785_5693136_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_011087896.1|5693132_5693873_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_038966374.1|5694128_5695091_-	transglycosylase SLT domain-containing protein	NA	A0A077KC92	Edwardsiella_phage	37.9	4.2e-06
WP_038966365.1|5695190_5696207_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011087899.1|5696277_5696478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027548121.1|5696522_5696765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011087901.1|5696820_5698119_-	glycoside hydrolase family 130 protein	NA	NA	NA	NA	NA
WP_011087902.1|5698153_5700439_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_011087904.1|5701372_5701744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038966366.1|5701819_5702068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028171545.1|5702155_5702335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_133415023.1|5702513_5702837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011087905.1|5702907_5703546_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_011087906.1|5703652_5703889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038966367.1|5704004_5705030_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_011087908.1|5705281_5705620_+	cytochrome c	NA	NA	NA	NA	NA
WP_011087909.1|5705699_5707121_+	MFS transporter	NA	NA	NA	NA	NA
WP_038966368.1|5707249_5707708_+	translation initiation factor 2	NA	NA	NA	NA	NA
WP_011087911.1|5707778_5710187_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	43.6	1.1e-175
WP_027548135.1|5710480_5710813_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	42.7	2.3e-12
WP_133415024.1|5711099_5711423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011087913.1|5711618_5711957_-	phasin family protein	NA	NA	NA	NA	NA
WP_011087914.1|5712346_5714182_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	34.7	8.9e-29
WP_011087915.1|5714402_5715128_-	DnaJ domain-containing protein	NA	NA	NA	NA	NA
WP_038966370.1|5715247_5716240_+	dicarboxylate transporter/tellurite-resistance protein TehA	NA	NA	NA	NA	NA
WP_011087917.1|5716244_5716994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011087918.1|5717113_5717974_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
5717827:5717843	attL	TCGCGATATCGACGGGC	NA	NA	NA	NA
WP_011087919.1|5718318_5719242_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_011087920.1|5719520_5720372_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_011087921.1|5720455_5720896_-	DUF1489 domain-containing protein	NA	NA	NA	NA	NA
WP_011087922.1|5720938_5721925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011087923.1|5722076_5722280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028171531.1|5722467_5722836_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_038966379.1|5722923_5723586_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_011087926.1|5723710_5724427_+	DUF599 domain-containing protein	NA	NA	NA	NA	NA
WP_051000307.1|5725111_5726518_+|integrase	site-specific integrase	integrase	A0A1X9SGU9	Bradyrhizobium_phage	31.9	1.8e-42
WP_162494118.1|5726753_5727146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038966380.1|5727112_5727550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011087930.1|5727546_5727810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011087931.1|5727938_5728904_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_011087932.1|5729524_5730295_+	porin family protein	NA	NA	NA	NA	NA
WP_038966389.1|5730475_5732062_-	DUF3300 domain-containing protein	NA	NA	NA	NA	NA
WP_162494227.1|5732120_5732588_-	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA	NA
WP_162494119.1|5733584_5733902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011087939.1|5735261_5736050_+	B12-binding domain-containing protein	NA	NA	NA	NA	NA
WP_038966382.1|5736194_5736785_+	DNA ligase	NA	A0A1X9SH33	Bradyrhizobium_phage	62.6	7.2e-65
WP_038966383.1|5737248_5737461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038966384.1|5737561_5737957_-	response regulator	NA	NA	NA	NA	NA
WP_038966385.1|5738281_5738806_-	cytochrome P460 family protein	NA	NA	NA	NA	NA
WP_011087943.1|5739170_5739596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_063921629.1|5740220_5740604_-	response regulator	NA	NA	NA	NA	NA
WP_011087945.1|5740844_5742218_-|transposase	IS701-like element ISBj9 family transposase	transposase	NA	NA	NA	NA
WP_011087946.1|5742278_5742998_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	46.2	3.3e-19
WP_063921482.1|5743581_5744091_-	hypothetical protein	NA	A0A1X6WFW6	Pacmanvirus	49.7	1.3e-49
WP_011087948.1|5744102_5744567_-	tryptophan-rich sensory protein	NA	A0A1V0S976	Catovirus	25.4	9.8e-09
WP_038968086.1|5744732_5745197_-	fasciclin domain-containing protein	NA	NA	NA	NA	NA
WP_011085260.1|5745443_5746043_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_162494120.1|5746309_5747077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011087951.1|5747941_5749006_+|transposase	IS110-like element ISBj4 family transposase	transposase	NA	NA	NA	NA
5754156:5754172	attR	TCGCGATATCGACGGGC	NA	NA	NA	NA
>prophage 9
NC_004463	Bradyrhizobium diazoefficiens USDA 110, complete genome	9105828	8974970	9015573	9105828	transposase,integrase	Klebsiella_phage(12.5%)	30	8965395:8965411	8979567:8979583
8965395:8965411	attL	TCATGGTGCTCGACGAC	NA	NA	NA	NA
WP_011090895.1|8974970_8976212_+|integrase	site-specific integrase	integrase	A0A248SL35	Klebsiella_phage	66.8	1.9e-160
WP_014498593.1|8976208_8977552_+	DUF1016 family protein	NA	Q9JMP5	Wolbachia_phage	55.5	6.2e-112
WP_011090897.1|8977553_8978807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090898.1|8978897_8981387_-	AAA family ATPase	NA	NA	NA	NA	NA
8979567:8979583	attR	GTCGTCGAGCACCATGA	NA	NA	NA	NA
WP_014498594.1|8981383_8981608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498595.1|8981697_8982474_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014498596.1|8982660_8983215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090901.1|8983333_8985121_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_011085265.1|8985161_8986271_+|transposase	IS630-like element ISBj5 family transposase	transposase	NA	NA	NA	NA
WP_011090902.1|8986281_8987046_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	49.0	4.7e-24
WP_011088795.1|8987604_8988669_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_009734588.1|8988926_8989511_-	DUF308 domain-containing protein	NA	NA	NA	NA	NA
WP_011090904.1|8989775_8990384_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014498601.1|8990543_8991191_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_011090906.1|8991295_8992174_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011090907.1|8992170_8993019_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_026192141.1|8993124_8993655_+	VOC family protein	NA	NA	NA	NA	NA
WP_016846434.1|8993942_8994227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498603.1|8994690_8995044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090914.1|8997467_8998799_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_011090915.1|8998731_8999568_-	porin family protein	NA	NA	NA	NA	NA
WP_011090916.1|9000011_9000680_+	AAA family ATPase	NA	A2I303	Vibrio_virus	32.7	1.5e-10
WP_011090917.1|9000642_9001680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090918.1|9001684_9002548_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	37.2	8.1e-33
WP_011090919.1|9002547_9004047_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	28.8	7.8e-15
WP_011084668.1|9004346_9004889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498652.1|9005858_9006125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090921.1|9006360_9006765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090930.1|9010443_9011577_-	FAD-dependent oxidoreductase	NA	A0A2K9L3K5	Tupanvirus	24.4	3.1e-08
WP_011090936.1|9014031_9015573_+|transposase	IS21-like element ISFK1 family transposase	transposase	K4I413	Acidithiobacillus_phage	44.3	2.0e-127
>prophage 10
NC_004463	Bradyrhizobium diazoefficiens USDA 110, complete genome	9105828	9027229	9080857	9105828	transposase,head,protease	Shigella_phage(33.33%)	54	NA	NA
WP_085967575.1|9027229_9028358_+|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
WP_011090953.1|9028762_9029119_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_011090954.1|9029115_9029514_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_011084509.1|9029670_9030015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497999.1|9030539_9030761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084508.1|9031330_9031588_+	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_011090955.1|9032322_9036648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498629.1|9037295_9037553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090956.1|9037620_9037863_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011090957.1|9037968_9038211_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_016846398.1|9038207_9038447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498627.1|9038450_9038693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090958.1|9039597_9039882_+	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
WP_154694125.1|9040753_9040978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498624.1|9041529_9041760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090960.1|9042145_9042349_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	49.2	1.1e-09
WP_011090961.1|9042365_9043772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071916953.1|9043749_9043929_+	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
WP_011090962.1|9043932_9044385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090963.1|9044399_9044615_-|head,protease	HK97 family phage prohead protease	head,protease	NA	NA	NA	NA
WP_011090964.1|9044611_9044890_-|head,protease	HK97 family phage prohead protease	head,protease	NA	NA	NA	NA
WP_011090966.1|9045643_9046177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090967.1|9046374_9046983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090968.1|9047327_9048755_-	hypothetical protein	NA	K4HZY1	Acidithiobacillus_phage	47.1	1.1e-111
WP_011090969.1|9048769_9049162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090970.1|9049118_9049790_-	bifunctional DNA primase/polymerase	NA	K4I049	Providencia_phage	31.0	3.0e-14
WP_129964954.1|9049773_9049992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164930922.1|9050226_9050556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085967575.1|9050488_9051617_+|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
WP_011090972.1|9053384_9053621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090974.1|9055382_9055664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016847165.1|9056426_9056657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161170744.1|9057104_9057455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090978.1|9057962_9058364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011087945.1|9058575_9059949_+|transposase	IS701-like element ISBj9 family transposase	transposase	NA	NA	NA	NA
WP_016848068.1|9060181_9060751_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_063921586.1|9060947_9062501_+	phosphomannomutase/phosphoglucomutase	NA	NA	NA	NA	NA
WP_125459388.1|9062542_9062761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090981.1|9063444_9064566_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_161170741.1|9066199_9066796_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011090985.1|9066804_9067746_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011090986.1|9067868_9068093_-	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
WP_011090987.1|9068089_9069292_-	TrbI/VirB10 family protein	NA	NA	NA	NA	NA
WP_011090988.1|9069282_9070362_-	P-type conjugative transfer protein TrbG	NA	NA	NA	NA	NA
WP_011090989.1|9070358_9071048_-	conjugal transfer protein TrbF	NA	NA	NA	NA	NA
WP_011090990.1|9071051_9072413_-	P-type conjugative transfer protein TrbL	NA	NA	NA	NA	NA
WP_011090991.1|9072409_9072730_-	putative entry exclusion protein TrbK-alt	NA	NA	NA	NA	NA
WP_011090992.1|9072740_9073499_-	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA	NA
WP_011090993.1|9073495_9075934_-	conjugal transfer protein TrbE	NA	NA	NA	NA	NA
WP_026312513.1|9075941_9076217_-	VirB3 family type IV secretion system protein	NA	NA	NA	NA	NA
WP_011090995.1|9076216_9076558_-	TrbC/VIRB2 family protein	NA	NA	NA	NA	NA
WP_011090996.1|9076554_9077553_-	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA	NA
WP_011091000.1|9079278_9079632_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	45.8	5.1e-18
WP_011084514.1|9079792_9080857_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
