assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000011305.1_ASM1130v1	NC_004369	Corynebacterium efficiens YS-314, complete genome	1	1241444-1242982	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	CCCTCAATGAAAGGCCGTCGAACTAACGACGGCAGG,CCCTCAATGAAAGGCCGTCGAACTAACGACGGCAGG,CCCTCAATGAAAGGCCGTCGAACTAACGACGGCAGG	36,36,36	1	1	1242835-1242871	NC_004369.1_907552-907588	NA:NA:NA	21,21,21	21	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|253aa|up_7|NC_004369.1_1234362_1235121_-,NA|238aa|down_2|NC_004369.1_1250945_1251659_-,NA|329aa|down_5|NC_004369.1_1253079_1254066_+,NA|72aa|down_9|NC_004369.1_1257795_1258011_+	NA|166aa|up_9|NC_004369.1_1232623_1233121_+	PRK00182, tatB, Sec-independent protein translocase subunit TatB	NA|375aa|up_8|NC_004369.1_1233202_1234327_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|253aa|up_7|NC_004369.1_1234362_1235121_-	NA	NA|185aa|up_6|NC_004369.1_1235131_1235686_-	COG4420, COG4420, Predicted membrane protein [Function unknown]	NA|432aa|up_5|NC_004369.1_1235678_1236974_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|173aa|up_4|NC_004369.1_1237113_1237632_+	pfam01769, MgtE, Divalent cation transporter	NA|232aa|up_3|NC_004369.1_1237654_1238350_+	cd13606, PBP2_ProX_like, Bacterial substrate-binding protein ProX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold	NA|238aa|up_2|NC_004369.1_1238509_1239223_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|158aa|up_1|NC_004369.1_1239525_1239999_+	TIGR04089, conserved_hypothetical_protein, alternate signal-mediated exported protein, RER_14450 family	NA|418aa|up_0|NC_004369.1_1240039_1241293_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|1235aa|down_0|NC_004369.1_1243288_1246993_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|1243aa|down_1|NC_004369.1_1247135_1250864_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|238aa|down_2|NC_004369.1_1250945_1251659_-	NA	NA|270aa|down_3|NC_004369.1_1251685_1252495_-	PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed	NA|151aa|down_4|NC_004369.1_1252542_1252995_-	COG5496, COG5496, Predicted thioesterase [General function prediction only]	NA|329aa|down_5|NC_004369.1_1253079_1254066_+	NA	NA|561aa|down_6|NC_004369.1_1254351_1256034_+	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|221aa|down_7|NC_004369.1_1256033_1256696_+	pfam11575, FhuF_C, FhuF 2Fe-2S C-terminal domain	NA|276aa|down_8|NC_004369.1_1256789_1257617_+	pfam04931, DNA_pol_phi, DNA polymerase phi	NA|72aa|down_9|NC_004369.1_1257795_1258011_+	NA
GCF_000011305.1_ASM1130v1	NC_004369	Corynebacterium efficiens YS-314, complete genome	2	1272926-1273038	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	CTGTTGGCCTGTGAGCACCGAGTTGCTCACA	31	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|162aa|up_7|NC_004369.1_1261689_1262175_-,NA|529aa|up_2|NC_004369.1_1268955_1270542_+,NA|105aa|up_1|NC_004369.1_1270679_1270994_+,NA|674aa|down_4|NC_004369.1_1278668_1280690_+,NA|312aa|down_5|NC_004369.1_1280679_1281615_+,NA|115aa|down_6|NC_004369.1_1281638_1281983_+	NA|110aa|up_9|NC_004369.1_1260937_1261267_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|139aa|up_8|NC_004369.1_1261266_1261683_+	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|162aa|up_7|NC_004369.1_1261689_1262175_-	NA	NA|426aa|up_6|NC_004369.1_1262300_1263578_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|455aa|up_5|NC_004369.1_1263581_1264946_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|755aa|up_4|NC_004369.1_1264946_1267211_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|377aa|up_3|NC_004369.1_1267759_1268890_+	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|529aa|up_2|NC_004369.1_1268955_1270542_+	NA	NA|105aa|up_1|NC_004369.1_1270679_1270994_+	NA	NA|468aa|up_0|NC_004369.1_1271422_1272826_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|224aa|down_0|NC_004369.1_1273104_1273776_+	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|436aa|down_1|NC_004369.1_1273911_1275219_+	pfam07929, PRiA4_ORF3, Plasmid pRiA4b ORF-3-like protein	NA|401aa|down_2|NC_004369.1_1275289_1276492_-	pfam13576, Pentapeptide_3, Pentapeptide repeats (9 copies)	NA|475aa|down_3|NC_004369.1_1276850_1278275_+	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism]	NA|674aa|down_4|NC_004369.1_1278668_1280690_+	NA	NA|312aa|down_5|NC_004369.1_1280679_1281615_+	NA	NA|115aa|down_6|NC_004369.1_1281638_1281983_+	NA	NA|405aa|down_7|NC_004369.1_1282156_1283371_-	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	NA|485aa|down_8|NC_004369.1_1283402_1284857_+	COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	NA|174aa|down_9|NC_004369.1_1286268_1286790_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed
GCF_000011305.1_ASM1130v1	NC_004369	Corynebacterium efficiens YS-314, complete genome	3	1985360-1985461	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	TGCGGTACCCGGCTTCGGGGCCG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA,NA	NA|753aa|up_9|NC_004369.1_1972366_1974625_-	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase	NA|90aa|up_8|NC_004369.1_1974884_1975154_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|317aa|up_7|NC_004369.1_1975307_1976258_-	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB)	NA|342aa|up_6|NC_004369.1_1976331_1977357_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|298aa|up_5|NC_004369.1_1977388_1978282_+	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|219aa|up_4|NC_004369.1_1978292_1978949_-	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|269aa|up_3|NC_004369.1_1978938_1979745_-	COG1409, Icc, Predicted phosphohydrolases [General function prediction only]	NA|436aa|up_2|NC_004369.1_1979881_1981189_-	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|333aa|up_1|NC_004369.1_1981274_1982273_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|150aa|up_0|NC_004369.1_1982278_1982728_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|106aa|down_0|NC_004369.1_1985945_1986263_-	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription]	NA|333aa|down_1|NC_004369.1_1986600_1987599_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|183aa|down_2|NC_004369.1_1987627_1988176_-	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|279aa|down_3|NC_004369.1_1988259_1989096_+	pfam14530, DUF4439, Domain of unknown function (DUF4439)	NA|536aa|down_4|NC_004369.1_1989496_1991104_+	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|309aa|down_5|NC_004369.1_1991242_1992169_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|346aa|down_6|NC_004369.1_1992161_1993199_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|580aa|down_7|NC_004369.1_1993195_1994935_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|589aa|down_8|NC_004369.1_1995027_1996794_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|246aa|down_9|NC_004369.1_1997107_1997845_+	PRK02101, PRK02101, peroxide stress protein YaaA
GCF_000011305.1_ASM1130v1	NC_004369	Corynebacterium efficiens YS-314, complete genome	4	1985534-1985613	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	TGCGGTACCCGGCTTCGGGGCCG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA,NA	NA|753aa|up_9|NC_004369.1_1972366_1974625_-	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase	NA|90aa|up_8|NC_004369.1_1974884_1975154_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|317aa|up_7|NC_004369.1_1975307_1976258_-	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB)	NA|342aa|up_6|NC_004369.1_1976331_1977357_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|298aa|up_5|NC_004369.1_1977388_1978282_+	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|219aa|up_4|NC_004369.1_1978292_1978949_-	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|269aa|up_3|NC_004369.1_1978938_1979745_-	COG1409, Icc, Predicted phosphohydrolases [General function prediction only]	NA|436aa|up_2|NC_004369.1_1979881_1981189_-	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|333aa|up_1|NC_004369.1_1981274_1982273_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|150aa|up_0|NC_004369.1_1982278_1982728_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|106aa|down_0|NC_004369.1_1985945_1986263_-	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription]	NA|333aa|down_1|NC_004369.1_1986600_1987599_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|183aa|down_2|NC_004369.1_1987627_1988176_-	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|279aa|down_3|NC_004369.1_1988259_1989096_+	pfam14530, DUF4439, Domain of unknown function (DUF4439)	NA|536aa|down_4|NC_004369.1_1989496_1991104_+	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|309aa|down_5|NC_004369.1_1991242_1992169_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|346aa|down_6|NC_004369.1_1992161_1993199_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|580aa|down_7|NC_004369.1_1993195_1994935_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|589aa|down_8|NC_004369.1_1995027_1996794_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|246aa|down_9|NC_004369.1_1997107_1997845_+	PRK02101, PRK02101, peroxide stress protein YaaA
GCF_000011305.1_ASM1130v1	NC_004369	Corynebacterium efficiens YS-314, complete genome	5	2814983-2815109	5	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	AGACGGTGACCTGTGAGCGCAGGGGTGCTCACAGGTCACCGTTTG	45	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|88aa|up_2|NC_004369.1_2811196_2811460_-,NA|323aa|down_0|NC_004369.1_2815125_2816094_-,NA|153aa|down_1|NC_004369.1_2816265_2816724_+	NA|190aa|up_9|NC_004369.1_2804812_2805382_-	PRK05634, PRK05634, nucleosidase; Provisional	NA|329aa|up_8|NC_004369.1_2805391_2806378_-	TIGR03571, lucif_BA3436, luciferase-type oxidoreductase, BA3436 family	NA|324aa|up_7|NC_004369.1_2806384_2807356_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|246aa|up_6|NC_004369.1_2807392_2808130_-	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|446aa|up_5|NC_004369.1_2808154_2809492_-	COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]	NA|309aa|up_4|NC_004369.1_2809491_2810418_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|262aa|up_3|NC_004369.1_2810414_2811200_-	TIGR02055, Phosphoadenosine_phosphosulfate_reductase, thioredoxin-dependent adenylylsulfate APS reductase	NA|88aa|up_2|NC_004369.1_2811196_2811460_-	NA	NA|565aa|up_1|NC_004369.1_2811456_2813151_-	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]	NA|458aa|up_0|NC_004369.1_2813567_2814941_+	PLN02852, PLN02852, ferredoxin-NADP+ reductase	NA|323aa|down_0|NC_004369.1_2815125_2816094_-	NA	NA|153aa|down_1|NC_004369.1_2816265_2816724_+	NA	NA|276aa|down_2|NC_004369.1_2816662_2817490_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|240aa|down_3|NC_004369.1_2817559_2818279_-	COG3910, COG3910, Predicted ATPase [General function prediction only]	NA|243aa|down_4|NC_004369.1_2818275_2819004_-	COG3910, COG3910, Predicted ATPase [General function prediction only]	NA|403aa|down_5|NC_004369.1_2819063_2820272_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|222aa|down_6|NC_004369.1_2820268_2820934_-	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|364aa|down_7|NC_004369.1_2821163_2822255_+	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|592aa|down_8|NC_004369.1_2822659_2824435_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|241aa|down_9|NC_004369.1_2824623_2825346_+	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family
GCF_000011305.1_ASM1130v1	NC_004369	Corynebacterium efficiens YS-314, complete genome	6	2827257-2827372	6	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	CGCACGAGGTTGCACTGTGACCAACAACTGCACC	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA,NA	NA|240aa|up_9|NC_004369.1_2817559_2818279_-	COG3910, COG3910, Predicted ATPase [General function prediction only]	NA|243aa|up_8|NC_004369.1_2818275_2819004_-	COG3910, COG3910, Predicted ATPase [General function prediction only]	NA|403aa|up_7|NC_004369.1_2819063_2820272_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|222aa|up_6|NC_004369.1_2820268_2820934_-	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|364aa|up_5|NC_004369.1_2821163_2822255_+	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|592aa|up_4|NC_004369.1_2822659_2824435_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|241aa|up_3|NC_004369.1_2824623_2825346_+	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family	NA|332aa|up_2|NC_004369.1_2825452_2826448_+	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|65aa|up_1|NC_004369.1_2826452_2826647_+	COG4877, COG4877, Uncharacterized protein conserved in bacteria [Function unknown]	NA|197aa|up_0|NC_004369.1_2826643_2827234_+	pfam03352, Adenine_glyco, Methyladenine glycosylase	NA|387aa|down_0|NC_004369.1_2827470_2828631_-	PRK13289, PRK13289, NO-inducible flavohemoprotein	NA|198aa|down_1|NC_004369.1_2829013_2829607_+	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|216aa|down_2|NC_004369.1_2829714_2830362_+	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only]	NA|397aa|down_3|NC_004369.1_2830576_2831767_+	PRK09265, PRK09265, aminotransferase AlaT; Validated	NA|438aa|down_4|NC_004369.1_2831826_2833140_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|194aa|down_5|NC_004369.1_2833224_2833806_-	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|603aa|down_6|NC_004369.1_2834156_2835965_+	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|161aa|down_7|NC_004369.1_2836073_2836556_+	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold	NA|330aa|down_8|NC_004369.1_2836552_2837542_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|528aa|down_9|NC_004369.1_2837549_2839133_-	COG2720, COG2720, Uncharacterized vancomycin resistance protein [Defense mechanisms]
