The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_004606	Streptococcus pyogenes SSI-1, complete genome	1894275	30871	43260	1894275		Synechococcus_phage(28.57%)	8	NA	NA
WP_011106567.1|30871_34597_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.7	3.9e-39
WP_009880323.1|34830_36285_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	3.7e-54
WP_009880322.1|36312_37335_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3FGG1	Synechococcus_phage	41.7	2.4e-63
WP_002986700.1|37502_38057_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
WP_011054093.1|38240_39788_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
WP_011054094.1|39846_40971_-	SH3 domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	1.3e-06
WP_032461289.1|41225_42491_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_030127619.1|42768_43260_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	2.5e-18
>prophage 2
NC_004606	Streptococcus pyogenes SSI-1, complete genome	1894275	428787	488414	1894275	integrase,bacteriocin,terminase,holin,head,tRNA,portal,capsid,tail	Streptococcus_phage(78.43%)	64	427772:427788	487309:487325
427772:427788	attL	ATTCGCTAAATCTTTTT	NA	NA	NA	NA
WP_011054912.1|428787_429714_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_011054911.1|430080_432120_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_002983550.1|432273_432531_+	DUF896 family protein	NA	NA	NA	NA	NA
WP_011054910.1|432657_433050_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_011054909.1|433408_434935_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_011054908.1|434950_436789_+	type 1 glycerol-3-phosphate oxidase	NA	NA	NA	NA	NA
WP_011054907.1|436790_437492_+	aquaporin family protein	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	36.8	1.3e-28
WP_002994262.1|437600_438947_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011054905.1|438936_440436_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002983569.1|440561_441206_+	fructose-6-phosphate aldolase	NA	A0A0C5AMY8	Cyanophage	44.2	2.2e-43
WP_011054904.1|441423_443409_+	transketolase	NA	NA	NA	NA	NA
WP_011054903.1|443601_443826_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_011054902.1|443901_444636_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.7	2.2e-26
WP_011106629.1|444640_446284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054900.1|446426_447515_-|integrase	site-specific integrase	integrase	Q938N9	Temperate_phage	72.6	6.4e-152
WP_011054899.1|447690_448242_-	hypothetical protein	NA	A7J267	Streptococcus_phage	94.0	1.5e-88
WP_011054898.1|448252_448636_-	hypothetical protein	NA	A7J268	Streptococcus_phage	99.2	1.5e-68
WP_011184049.1|448649_449000_-	helix-turn-helix transcriptional regulator	NA	M1I9X0	Streptococcus_phage	85.3	1.2e-48
WP_001283052.1|449638_449830_+	hypothetical protein	NA	A7J270	Streptococcus_phage	100.0	7.3e-27
WP_011054896.1|449850_450081_+	hypothetical protein	NA	A7J271	Streptococcus_phage	92.0	3.4e-31
WP_011054895.1|450168_450426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054894.1|450454_450625_+	hypothetical protein	NA	A7J273	Streptococcus_phage	92.9	9.0e-21
WP_011054892.1|450821_451205_+	hypothetical protein	NA	A7J274	Streptococcus_phage	93.7	5.9e-60
WP_011054890.1|451350_451554_+	hypothetical protein	NA	A7J276	Streptococcus_phage	94.0	1.2e-30
WP_000573833.1|451641_451941_+	hypothetical protein	NA	A7J277	Streptococcus_phage	99.0	2.3e-43
WP_011054889.1|451940_453098_+	DUF2800 domain-containing protein	NA	A7J278	Streptococcus_phage	99.2	8.5e-219
WP_011054888.1|453111_453675_+	DUF2815 family protein	NA	D2J040	Enterococcus_phage	57.9	5.6e-51
WP_011054887.1|453717_455640_+	DNA polymerase	NA	A7J280	Streptococcus_phage	98.3	0.0e+00
WP_011054886.1|455644_458029_+	DNA primase	NA	A7J282	Streptococcus_phage	98.0	5.7e-286
WP_011054885.1|458394_458670_+	VRR-NUC domain-containing protein	NA	A7J283	Streptococcus_phage	96.7	2.9e-45
WP_011054884.1|458666_459989_+	DEAD/DEAH box helicase family protein	NA	A7J284	Streptococcus_phage	97.3	7.3e-251
WP_011054883.1|459989_460160_+	hypothetical protein	NA	A7J285	Streptococcus_phage	94.2	3.1e-21
WP_011054882.1|460152_460425_+	hypothetical protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
WP_011054881.1|460557_460974_+	transcriptional regulator	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
WP_011106637.1|461063_461516_+|terminase	terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
WP_011054879.1|461505_462783_+|terminase	PBSX family phage terminase large subunit	terminase	A7J291	Streptococcus_phage	100.0	1.1e-246
WP_011106638.1|462798_464331_+|portal	phage portal protein	portal	A7J292	Streptococcus_phage	99.6	9.9e-292
WP_011054877.1|464290_465739_+|capsid	minor capsid protein	capsid	A7J293	Streptococcus_phage	99.6	1.3e-277
WP_011054876.1|465766_465955_+	hypothetical protein	NA	A7J294	Streptococcus_phage	100.0	7.4e-24
WP_011054875.1|465959_466226_+	hypothetical protein	NA	Q938K9	Temperate_phage	95.5	1.1e-36
WP_011054874.1|466393_466963_+	DUF4355 domain-containing protein	NA	A7J296	Streptococcus_phage	99.5	7.4e-83
WP_002983429.1|466975_467863_+	hypothetical protein	NA	A7J297	Streptococcus_phage	100.0	2.1e-161
WP_011054873.1|467874_468231_+|head,tail	phage head-tail connector protein	head,tail	A7J298	Streptococcus_phage	100.0	4.6e-59
WP_011054872.1|468241_468520_+	hypothetical protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
WP_011106640.1|468516_468861_+	HK97 gp10 family phage protein	NA	A7J2A0	Streptococcus_phage	98.2	5.1e-55
WP_011054870.1|468864_469224_+	hypothetical protein	NA	A7J2A1	Streptococcus_phage	98.3	1.2e-57
WP_011054869.1|469235_469835_+|tail	phage major tail protein, TP901-1 family	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
WP_011054868.1|469888_470344_+	hypothetical protein	NA	A7J2A3	Streptococcus_phage	98.0	3.5e-75
WP_011054867.1|470418_470652_+	hypothetical protein	NA	A7J2A4	Streptococcus_phage	97.4	6.4e-33
WP_011054866.1|470666_475049_+	tape measure protein	NA	A7J2A5	Streptococcus_phage	75.9	3.3e-223
WP_011054865.1|475060_475903_+	hypothetical protein	NA	A7J2A6	Streptococcus_phage	97.9	8.8e-157
WP_011054864.1|475912_477892_+|tail	phage tail protein	tail	A7J2A7	Streptococcus_phage	92.5	0.0e+00
WP_011054441.1|477888_478896_+	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	61.4	4.6e-104
WP_032461307.1|478905_480921_+	gp58-like family protein	NA	Q938J9	Temperate_phage	73.4	3.3e-186
WP_011106643.1|480932_481370_+	DUF1617 family protein	NA	Q938J8	Temperate_phage	98.6	9.1e-73
WP_011184056.1|481366_481984_+	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	89.3	5.0e-77
WP_002986916.1|481993_482266_+	hypothetical protein	NA	A7J2B2	Streptococcus_phage	91.0	7.2e-36
WP_003058873.1|482262_482490_+|holin	phage holin	holin	A7J2B3	Streptococcus_phage	100.0	2.0e-31
WP_011184057.1|482605_483808_+	glucosaminidase domain-containing protein	NA	Q938J4	Temperate_phage	99.8	2.8e-241
WP_023077389.1|484129_484645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011106647.1|484758_485745_-	DNA/RNA non-specific endonuclease	NA	A7J2B8	Streptococcus_phage	100.0	1.4e-169
WP_011054856.1|485977_486160_+	hypothetical protein	NA	A3F673	Streptococcus_phage	83.3	1.5e-21
WP_011054855.1|486349_487171_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	36.8	4.7e-38
WP_011054854.1|487163_488414_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	55.6	2.2e-116
487309:487325	attR	AAAAAGATTTAGCGAAT	NA	NA	NA	NA
>prophage 3
NC_004606	Streptococcus pyogenes SSI-1, complete genome	1894275	522777	585149	1894275	integrase,holin,tRNA,portal,capsid,tail	Streptococcus_pyogenes_phage(56.14%)	67	543161:543176	557786:557801
WP_011054834.1|522777_523713_+|tRNA	methionyl-tRNA formyltransferase	tRNA	M4QRX9	Synechococcus_phage	38.5	6.0e-05
WP_002983657.1|523702_525025_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
WP_002983660.1|525062_525803_+	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA	NA
WP_002994648.1|525799_527698_+	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	B5LWE2	Feldmannia_species_virus	30.7	1.4e-21
WP_011054833.1|527820_528513_+	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_002991890.1|528509_529514_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_002983671.1|529506_530148_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011054832.1|530184_531585_+	Cof-type HAD-IIB family hydrolase	NA	A0A1V0S9I2	Catovirus	43.5	4.1e-26
WP_002991882.1|531584_531962_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002991877.1|531979_532921_-	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	77.2	1.3e-129
WP_011106658.1|533048_533681_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	54.3	5.5e-63
WP_011054828.1|535031_535697_+	ComF family protein	NA	NA	NA	NA	NA
WP_002988974.1|535776_536325_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
543161:543176	attL	AAATCCCATTATAAAA	NA	NA	NA	NA
WP_011054826.1|544098_544632_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_002991791.1|544711_545488_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_009880742.1|545635_546802_-|integrase	tyrosine-type recombinase/integrase	integrase	C5J953	Streptococcus_phage	42.2	7.0e-80
WP_011054825.1|547833_547986_-	hypothetical protein	NA	A0A1P8VVQ0	Streptococcus_phage	100.0	5.2e-20
WP_011054824.1|547996_548374_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A1P8VVK5	Streptococcus_phage	100.0	4.0e-69
WP_011054823.1|548357_548717_-	helix-turn-helix transcriptional regulator	NA	A0A1P8VVN3	Streptococcus_phage	97.5	4.0e-58
WP_009881062.1|548905_549124_+	helix-turn-helix transcriptional regulator	NA	A0A1P8VVR5	Streptococcus_phage	100.0	4.1e-34
WP_011054822.1|549218_549470_+	hypothetical protein	NA	A0A1P8VVV6	Streptococcus_phage	98.8	1.4e-41
WP_011054821.1|549500_549638_+	hypothetical protein	NA	A0A1P8VVR9	Streptococcus_phage	91.1	9.2e-16
WP_011054583.1|549653_549968_+	helix-turn-helix transcriptional regulator	NA	A0A1P8VVN6	Streptococcus_phage	94.2	2.3e-49
WP_011054820.1|550196_550679_+	siphovirus Gp157 family protein	NA	A0A1P8VVS5	Streptococcus_phage	99.4	4.6e-78
WP_002995975.1|550679_551360_+	AAA family ATPase	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
WP_011054819.1|551461_552691_+	DEAD/DEAH box helicase	NA	A0A1P8VVM2	Streptococcus_phage	99.5	2.8e-236
WP_011054580.1|552706_553165_+	DUF669 domain-containing protein	NA	A0A1P8VVN0	Streptococcus_phage	99.3	5.0e-82
WP_011106664.1|553167_553980_+	bifunctional DNA primase/polymerase	NA	A0A1P8VVM6	Streptococcus_phage	98.9	4.6e-155
WP_011054817.1|555694_556015_+	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	99.1	5.8e-53
WP_011054816.1|555998_556355_+	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	94.9	1.8e-58
WP_011018137.1|556596_556881_+	DUF3310 domain-containing protein	NA	A0A1P8VVP5	Streptococcus_phage	97.9	2.7e-49
WP_011054815.1|556877_557291_+	hypothetical protein	NA	Q938M1	Temperate_phage	63.1	1.2e-34
WP_011054814.1|557287_557458_+	hypothetical protein	NA	Q938M0	Temperate_phage	96.8	2.5e-10
WP_032461310.1|557454_557739_+	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	91.5	5.0e-40
WP_011054813.1|557741_558077_+	hypothetical protein	NA	A0A097PAS4	Streptococcus_pyogenes_phage	100.0	4.7e-45
557786:557801	attR	TTTTATAATGGGATTT	NA	NA	NA	NA
WP_011054812.1|558242_558428_+	hypothetical protein	NA	A0A097PBF0	Streptococcus_pyogenes_phage	100.0	7.0e-27
WP_011054811.1|558714_559218_+	DUF1642 domain-containing protein	NA	A0A097PAV5	Streptococcus_pyogenes_phage	97.6	8.5e-91
WP_002987493.1|559214_559385_+	hypothetical protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	100.0	2.9e-27
WP_011054810.1|559668_560103_+	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	94.4	2.2e-71
WP_011285571.1|560712_561093_+	hypothetical protein	NA	A0A097PAR5	Streptococcus_pyogenes_phage	100.0	1.0e-64
WP_032461413.1|562356_563682_+|portal	phage portal protein	portal	A0A097PAT2	Streptococcus_pyogenes_phage	99.5	1.8e-241
WP_009880264.1|563650_564559_+|capsid	minor capsid protein	capsid	A0A097PBF2	Streptococcus_pyogenes_phage	100.0	4.2e-88
WP_011054805.1|564565_564832_+	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	100.0	2.6e-38
WP_011054804.1|564981_565554_+	DUF4355 domain-containing protein	NA	A0A097PAW3	Streptococcus_pyogenes_phage	100.0	1.2e-72
WP_009880261.1|565571_566462_+	hypothetical protein	NA	A0A097PAW2	Streptococcus_pyogenes_phage	99.4	8.6e-86
WP_009880260.1|566474_566768_+	Rho termination factor N-terminal domain-containing protein	NA	A0A097PBF3	Streptococcus_pyogenes_phage	100.0	2.0e-47
WP_009880259.1|566781_567126_+	hypothetical protein	NA	A0A097PAS2	Streptococcus_pyogenes_phage	100.0	1.1e-54
WP_009880258.1|567122_567434_+	hypothetical protein	NA	A0A097PAW7	Streptococcus_pyogenes_phage	99.0	2.6e-50
WP_009880257.1|567430_567826_+	hypothetical protein	NA	A0A097PAT9	Streptococcus_pyogenes_phage	100.0	1.8e-59
WP_009880256.1|567827_568238_+	DUF5072 family protein	NA	A0A097PAW5	Streptococcus_pyogenes_phage	100.0	1.4e-70
WP_009880255.1|568249_568756_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	100.0	2.6e-79
WP_009880254.1|568768_569086_+	hypothetical protein	NA	A0A097PAS6	Streptococcus_pyogenes_phage	100.0	4.9e-52
WP_009880253.1|569058_569517_+	hypothetical protein	NA	A0A097PAX1	Streptococcus_pyogenes_phage	100.0	2.3e-82
WP_011054802.1|569509_571315_+|tail	tail protein	tail	A0A097PAU2	Streptococcus_pyogenes_phage	99.7	8.8e-263
WP_009880250.1|571315_572800_+|tail	phage tail family protein	tail	A0A097PAW9	Streptococcus_pyogenes_phage	99.8	4.3e-292
WP_011054801.1|572800_576241_+|tail	phage tail protein	tail	A0A097PBF5	Streptococcus_pyogenes_phage	99.9	0.0e+00
WP_011106671.1|576245_578108_+	hypothetical protein	NA	A0A097PAT0	Streptococcus_pyogenes_phage	99.7	0.0e+00
WP_009880247.1|578118_578466_+	DUF1366 domain-containing protein	NA	A0A097PAX5	Streptococcus_pyogenes_phage	100.0	3.5e-59
WP_011054798.1|578937_579270_+|holin	phage holin	holin	A0A097PBF6	Streptococcus_pyogenes_phage	100.0	5.7e-51
WP_011054797.1|579271_580036_+	CHAP domain-containing protein	NA	A0A097PAT3	Streptococcus_pyogenes_phage	100.0	1.5e-150
WP_011054796.1|580047_580650_+	hypothetical protein	NA	A0A097PAX9	Streptococcus_pyogenes_phage	98.8	7.8e-91
WP_011054795.1|580660_581434_+	hypothetical protein	NA	A0A097PAV0	Streptococcus_pyogenes_phage	100.0	3.9e-135
WP_009880241.1|581443_581665_+	hypothetical protein	NA	A0A097PAX7	Streptococcus_pyogenes_phage	84.5	2.5e-18
WP_009880240.1|581664_582324_+	hypothetical protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	100.0	8.5e-123
WP_011054794.1|582445_583201_-	streptococcal pyrogenic exotoxin SpeA	NA	A0A097PAT7	Streptococcus_pyogenes_phage	99.6	2.2e-143
WP_011054793.1|583420_583603_+	hypothetical protein	NA	J7KBZ4	Streptococcus_phage	81.4	1.1e-19
WP_002991789.1|583793_585149_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	33.0	1.1e-73
>prophage 4
NC_004606	Streptococcus pyogenes SSI-1, complete genome	1894275	615606	669296	1894275	integrase,terminase,tRNA,portal,capsid,tail	Temperate_phage(81.54%)	74	624875:624891	644239:644255
WP_011054774.1|615606_618255_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.1	7.3e-149
WP_011054773.1|618470_619250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054772.1|620259_621219_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_011054771.1|621310_622243_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_002983776.1|622463_623174_+	thiol-disulfide oxidoreductase-associated membrane protein CcdA2	NA	NA	NA	NA	NA
WP_011054770.1|623186_623810_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_011054769.1|623852_624959_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
624875:624891	attL	CATCAATAGCTTGTCTA	NA	NA	NA	NA
WP_002986896.1|625069_626224_-|integrase	site-specific integrase	integrase	Q938N9	Temperate_phage	100.0	2.8e-206
WP_002986895.1|626342_626864_-	hypothetical protein	NA	Q938N8	Temperate_phage	100.0	2.3e-67
WP_002986894.1|626874_627255_-	hypothetical protein	NA	Q938N7	Temperate_phage	100.0	5.3e-69
WP_011054768.1|627268_627628_-	helix-turn-helix transcriptional regulator	NA	Q938N6	Temperate_phage	100.0	1.1e-60
WP_002986891.1|628423_628615_+	hypothetical protein	NA	A7J270	Streptococcus_phage	90.5	1.2e-24
WP_011054767.1|628625_629354_+	phage antirepressor KilAC domain-containing protein	NA	Q938N5	Temperate_phage	100.0	6.9e-134
WP_002986888.1|629386_629536_+	hypothetical protein	NA	Q938N4	Temperate_phage	100.0	1.8e-20
WP_002986887.1|629532_629733_-	KTSC domain-containing protein	NA	A0A1S5S8T9	Streptococcus_phage	72.3	6.3e-21
WP_011054766.1|629721_629976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002988339.1|630221_630479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054765.1|630507_630693_+	hypothetical protein	NA	Q938N3	Temperate_phage	100.0	1.1e-24
WP_011106684.1|630786_631044_+	hypothetical protein	NA	A0A1S5SFN6	Streptococcus_phage	46.4	1.2e-11
WP_011054763.1|631165_631579_+	DnaD domain protein	NA	Q938N2	Temperate_phage	100.0	2.1e-63
WP_011054762.1|631559_631793_+	hypothetical protein	NA	Q938N1	Temperate_phage	100.0	5.0e-38
WP_011284979.1|631789_631930_+	hypothetical protein	NA	A0A1X9I6Y1	Streptococcus_phage	52.3	7.5e-05
WP_011054761.1|631940_632195_+	hypothetical protein	NA	Q938N0	Temperate_phage	100.0	7.4e-43
WP_011018142.1|632216_632699_+	siphovirus Gp157 family protein	NA	Q938M9	Temperate_phage	100.0	8.2e-51
WP_011054760.1|632699_633374_+	ERF family protein	NA	Q938M8	Temperate_phage	100.0	2.5e-106
WP_011054759.1|633366_633786_+	single-stranded DNA-binding protein	NA	Q938M7	Temperate_phage	100.0	1.6e-71
WP_011106686.1|633791_633995_+	hypothetical protein	NA	Q938M6	Temperate_phage	100.0	4.7e-32
WP_011054758.1|633994_634435_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.3	8.5e-79
WP_011054757.1|634431_634788_+	hypothetical protein	NA	A0A1P8VVP9	Streptococcus_phage	85.6	1.6e-51
WP_011054756.1|634784_635036_+	hypothetical protein	NA	Q938M4	Temperate_phage	100.0	6.8e-41
WP_011054755.1|635029_635314_+	DUF3310 domain-containing protein	NA	Q938M3	Temperate_phage	100.0	5.4e-50
WP_011054754.1|635310_635580_+	hypothetical protein	NA	Q938M2	Temperate_phage	100.0	4.0e-47
WP_011054753.1|635589_635994_+	hypothetical protein	NA	Q938M1	Temperate_phage	100.0	6.0e-71
WP_011054752.1|635990_636161_+	hypothetical protein	NA	Q938M0	Temperate_phage	100.0	4.2e-26
WP_011054751.1|636157_636664_+	DUF1642 domain-containing protein	NA	Q938L9	Temperate_phage	100.0	9.8e-95
WP_164997036.1|636660_636831_+	hypothetical protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	98.2	1.1e-26
WP_011017866.1|637104_637545_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	100.0	5.0e-79
WP_011054748.1|638183_638441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002986854.1|638521_639040_+	ParB N-terminal domain-containing protein	NA	Q938L7	Temperate_phage	100.0	1.5e-90
WP_002986850.1|639018_639696_+	hypothetical protein	NA	Q938L6	Temperate_phage	100.0	8.7e-131
WP_002986845.1|639818_640088_+	hypothetical protein	NA	B5SP24	Lactococcus_phage	51.1	2.8e-16
WP_002986841.1|640148_640526_+	ASCH domain-containing protein	NA	Q938L5	Temperate_phage	100.0	1.7e-67
WP_011054747.1|640576_641050_+	hypothetical protein	NA	Q938L4	Temperate_phage	99.4	4.3e-76
WP_010922074.1|641132_642344_+|terminase	PBSX family phage terminase large subunit	terminase	Q938L3	Temperate_phage	99.7	3.7e-225
WP_002986832.1|642357_643860_+|portal	phage portal protein	portal	Q938L2	Temperate_phage	100.0	5.4e-282
WP_011054746.1|643864_645343_+|capsid	phage minor capsid protein	capsid	Q938L1	Temperate_phage	100.0	8.2e-275
644239:644255	attR	TAGACAAGCTATTGATG	NA	NA	NA	NA
WP_002986829.1|645314_645554_+	hypothetical protein	NA	Q938L0	Temperate_phage	100.0	2.8e-36
WP_011054745.1|645615_645882_+	hypothetical protein	NA	Q938K9	Temperate_phage	100.0	1.5e-38
WP_011106689.1|646007_646622_+	hypothetical protein	NA	Q938K8	Temperate_phage	100.0	1.3e-96
WP_010922080.1|646625_647444_+|capsid	N4-gp56 family major capsid protein	capsid	Q79S85	Temperate_phage	100.0	4.0e-146
WP_011054743.1|647497_647914_+	hypothetical protein	NA	Q938K7	Temperate_phage	100.0	1.1e-56
WP_010922082.1|647903_648236_+	hypothetical protein	NA	Q79S86	Temperate_phage	100.0	9.6e-59
WP_010922083.1|648235_648592_+	hypothetical protein	NA	Q79S88	Temperate_phage	100.0	4.5e-62
WP_010922084.1|648588_648987_+|capsid	phage capsid protein	capsid	Q79S87	Temperate_phage	100.0	3.5e-71
WP_011054741.1|648986_649472_+	hypothetical protein	NA	Q938K6	Temperate_phage	100.0	1.6e-86
WP_011054740.1|649510_649945_+	hypothetical protein	NA	Q938K5	Temperate_phage	100.0	2.6e-72
WP_011054739.1|649948_650530_+	hypothetical protein	NA	Q938K4	Temperate_phage	100.0	1.3e-106
WP_011054738.1|650519_653780_+	tape measure protein	NA	Q938K3	Temperate_phage	99.9	0.0e+00
WP_011054737.1|653776_654493_+|tail	phage tail family protein	tail	Q938K2	Temperate_phage	100.0	2.9e-137
WP_011054736.1|654489_656634_+|tail	phage tail protein	tail	Q938K1	Temperate_phage	100.0	0.0e+00
WP_011054735.1|656630_657644_+	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	100.0	1.2e-184
WP_011054734.1|657658_659542_+	gp58-like family protein	NA	Q938J9	Temperate_phage	100.0	2.8e-256
WP_002987513.1|659553_659985_+	DUF1617 family protein	NA	Q938J8	Temperate_phage	100.0	1.1e-73
WP_011054733.1|659987_660599_+	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	100.0	2.7e-91
WP_011054732.1|660609_660906_+	hypothetical protein	NA	Q938J6	Temperate_phage	100.0	7.5e-47
WP_011054731.1|660902_661088_+	hypothetical protein	NA	Q938J5	Temperate_phage	100.0	1.7e-25
WP_011054730.1|661198_662401_+	glucosaminidase domain-containing protein	NA	Q938J4	Temperate_phage	100.0	3.3e-242
WP_011017840.1|662540_663065_+	DUF4065 domain-containing protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
WP_011054729.1|663052_663919_+	DUF334 domain-containing protein	NA	Q938J2	Temperate_phage	100.0	3.7e-134
WP_041174277.1|664222_665002_+	streptococcal pyrogenic exotoxin SpeK	NA	Q938J1	Temperate_phage	99.6	1.6e-144
WP_011054727.1|665477_666053_+	hypothetical protein	NA	Q938J0	Temperate_phage	100.0	1.7e-111
WP_011054726.1|666398_666581_+	hypothetical protein	NA	A3F673	Streptococcus_phage	76.7	2.6e-18
WP_011054725.1|666825_667566_+	response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	32.4	8.0e-05
WP_011054724.1|667562_669296_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	33.7	1.3e-26
>prophage 5
NC_004606	Streptococcus pyogenes SSI-1, complete genome	1894275	722302	762768	1894275	integrase,terminase,holin,portal,capsid,tail	Streptococcus_phage(71.43%)	57	724911:724930	759311:759330
WP_030126969.1|722302_723154_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	9.2e-13
WP_002992620.1|723146_723989_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_002989129.1|723966_724554_+	YpmS family protein	NA	NA	NA	NA	NA
WP_002983920.1|724652_724928_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
724911:724930	attL	AAAGACGCTGTTAAATAATT	NA	NA	NA	NA
WP_003051793.1|725016_726159_-|integrase	site-specific integrase	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
WP_010922481.1|726282_726801_-	restriction endonuclease	NA	E8ZDN5	Streptococcus_phage	45.9	9.2e-32
WP_010922480.1|726812_727568_-	helix-turn-helix transcriptional regulator	NA	A0A1S5S8S8	Streptococcus_phage	60.8	2.8e-77
WP_010922479.1|727769_727982_+	helix-turn-helix transcriptional regulator	NA	A0A1X9I583	Streptococcus_phage	56.7	1.1e-10
WP_010922478.1|728251_728563_+	excisionase	NA	A0A1S5SA25	Streptococcus_phage	77.7	5.3e-43
WP_010922477.1|728564_728750_+	hypothetical protein	NA	Q938N3	Temperate_phage	83.6	1.3e-20
WP_011017564.1|729253_729640_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	51.9	8.1e-25
WP_010922205.1|729620_729854_+	hypothetical protein	NA	Q938N1	Temperate_phage	96.1	2.8e-36
WP_002988354.1|729850_729991_+	hypothetical protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
WP_002988357.1|729999_730206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054700.1|730594_731521_+	recombinase RecT	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
WP_000594115.1|731517_731718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054699.1|731710_732508_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	J7KGZ1	Streptococcus_phage	83.8	1.3e-130
WP_011054698.1|732872_733268_+	hypothetical protein	NA	A8ATL9	Listeria_phage	52.3	1.4e-19
WP_011054697.1|733264_734611_+	PcfJ domain-containing protein	NA	A8ATM0	Listeria_phage	49.4	1.0e-122
WP_011054696.1|734621_734954_+	hypothetical protein	NA	M1NS23	Streptococcus_phage	66.1	5.7e-35
WP_011054695.1|734950_735463_+	hypothetical protein	NA	M1PFM2	Streptococcus_phage	85.9	1.7e-78
WP_011054694.1|735498_735816_+	DUF1372 family protein	NA	A1EAD7	Streptococcus_phage	71.4	9.0e-30
WP_011054693.1|735812_735968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054692.1|735964_736216_+	hypothetical protein	NA	M1PF60	Streptococcus_phage	59.0	1.6e-18
WP_011054691.1|736291_736711_+	DUF1492 domain-containing protein	NA	A0A1X9I5B5	Streptococcus_phage	79.1	1.9e-56
WP_011054690.1|736818_737163_+	HNH endonuclease	NA	M1Q0W7	Streptococcus_phage	69.4	3.2e-41
WP_002994106.1|737310_737667_+	hypothetical protein	NA	M1PRL3	Streptococcus_phage	57.8	2.4e-07
WP_010922468.1|737663_738932_+|portal	phage portal protein	portal	M1PFL4	Streptococcus_phage	75.6	2.2e-188
WP_010922467.1|738924_740418_+	hypothetical protein	NA	M1Q184	Streptococcus_phage	55.0	2.0e-87
WP_002994100.1|740423_740648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054687.1|740724_740877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002986828.1|740869_741136_+	hypothetical protein	NA	Q938K9	Temperate_phage	95.5	6.4e-37
WP_011106704.1|741137_741353_+	hypothetical protein	NA	M1IRA5	Streptococcus_phage	72.4	4.1e-26
WP_011054685.1|741434_742850_+|terminase	terminase	terminase	A0A0B5A091	Streptococcus_phage	74.0	1.5e-212
WP_011054684.1|742930_743392_+	DUF4355 domain-containing protein	NA	M1Q1L0	Streptococcus_phage	52.6	1.7e-37
WP_011054683.1|743416_744328_+|capsid	phage major capsid protein	capsid	M1PFL0	Streptococcus_phage	67.0	2.9e-113
WP_010922460.1|744327_744528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054682.1|744537_744960_+	hypothetical protein	NA	A0A0B5A2F6	Streptococcus_phage	67.2	8.2e-47
WP_011054681.1|744919_745258_+	hypothetical protein	NA	A0A0B5A086	Streptococcus_phage	75.0	8.1e-45
WP_000032787.1|745250_745487_+	hypothetical protein	NA	A0A1P8BMT2	Lactococcus_phage	66.7	2.5e-21
WP_000573598.1|745487_745823_+	hypothetical protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	9.8e-35
WP_011054679.1|745838_746429_+	hypothetical protein	NA	M1PKG8	Streptococcus_phage	62.5	1.1e-60
WP_010922455.1|746439_746703_+	hypothetical protein	NA	A0A0B5A2F3	Streptococcus_phage	55.8	1.0e-18
WP_011054678.1|746717_747089_+	DUF5361 domain-containing protein	NA	M1PL84	Streptococcus_phage	62.4	1.7e-35
WP_011054677.1|747088_749452_+	hypothetical protein	NA	M1NRG5	Streptococcus_phage	50.1	3.6e-131
WP_002992579.1|749448_750144_+	hypothetical protein	NA	A0A1B1P761	Bacillus_phage	32.2	4.7e-07
WP_011054676.1|750125_752099_+|tail	phage tail protein	tail	M1PKG3	Streptococcus_phage	49.6	2.0e-98
WP_011054675.1|752098_753208_+	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	65.9	1.2e-113
WP_011054674.1|753222_755004_+	hypothetical protein	NA	Q938J9	Temperate_phage	41.7	4.4e-73
WP_011054673.1|755012_755444_+	DUF1617 family protein	NA	A3F661	Streptococcus_phage	91.4	3.1e-65
WP_011054672.1|755446_756061_+	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	79.4	1.8e-66
WP_002983475.1|756071_756527_+|holin	phage holin family protein	holin	A0A0M4R3G6	Streptococcus_phage	81.5	3.0e-63
WP_002983477.1|756638_757853_+	glucosaminidase domain-containing protein	NA	A0A1P8VVM5	Streptococcus_phage	60.5	9.7e-165
WP_002983479.1|758097_758892_+	DNA/RNA non-specific endonuclease	NA	A7J2B8	Streptococcus_phage	35.6	8.9e-26
WP_011054671.1|758958_759141_+	hypothetical protein	NA	A3F673	Streptococcus_phage	81.7	4.4e-21
WP_011106710.1|759670_761533_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	33.8	2.7e-89
759311:759330	attR	AAAGACGCTGTTAAATAATT	NA	NA	NA	NA
WP_011054669.1|761832_762768_-	dihydroorotate oxidase	NA	A0A1V0SH91	Hokovirus	45.1	1.0e-65
>prophage 6
NC_004606	Streptococcus pyogenes SSI-1, complete genome	1894275	875185	922030	1894275	integrase,terminase,holin,head,portal,protease,capsid,tail	Streptococcus_phage(65.38%)	59	863323:863337	886925:886939
863323:863337	attL	TGTTTTTTAGCCACA	NA	NA	NA	NA
WP_011054597.1|875185_877450_+	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
WP_011054596.1|877706_878327_-	DUF3862 domain-containing protein	NA	NA	NA	NA	NA
WP_011054595.1|878689_879778_-|integrase	site-specific integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	99.2	4.7e-203
WP_011106738.1|879897_880203_-	membrane protein	NA	NA	NA	NA	NA
WP_021340822.1|880212_881001_-	peptidase S24	NA	A0A1S5SD15	Streptococcus_phage	62.6	2.9e-85
WP_011054593.1|881372_881519_+	hypothetical protein	NA	A0A097PAP2	Streptococcus_pyogenes_phage	92.3	6.6e-20
WP_011054591.1|881652_882432_-	hypothetical protein	NA	A0A1S5S7L0	Streptococcus_phage	57.4	6.2e-48
WP_011054590.1|882488_882695_+	hypothetical protein	NA	A0A097PAQ9	Streptococcus_pyogenes_phage	92.8	1.4e-28
WP_011054589.1|882683_883070_-	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	100.0	1.2e-65
WP_011054588.1|883143_883383_+	helix-turn-helix transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	100.0	4.8e-36
WP_002984292.1|883598_883808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054586.1|883958_884198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054585.1|884364_884550_+	helix-turn-helix transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
WP_011054584.1|884627_884924_+	hypothetical protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	100.0	2.1e-49
WP_011054583.1|885070_885385_+	helix-turn-helix transcriptional regulator	NA	A0A1P8VVN6	Streptococcus_phage	94.2	2.3e-49
WP_011054820.1|885613_886096_+	siphovirus Gp157 family protein	NA	A0A1P8VVS5	Streptococcus_phage	99.4	4.6e-78
WP_002995975.1|886096_886777_+	AAA family ATPase	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
WP_011054819.1|886878_888108_+	DEAD/DEAH box helicase	NA	A0A1P8VVM2	Streptococcus_phage	99.5	2.8e-236
886925:886939	attR	TGTTTTTTAGCCACA	NA	NA	NA	NA
WP_011054580.1|888123_888582_+	DUF669 domain-containing protein	NA	A0A1P8VVN0	Streptococcus_phage	99.3	5.0e-82
WP_011106664.1|888584_889397_+	bifunctional DNA primase/polymerase	NA	A0A1P8VVM6	Streptococcus_phage	98.9	4.6e-155
WP_008087509.1|891123_891537_+	hypothetical protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	50.0	2.8e-15
WP_011054576.1|891533_891854_+	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	94.3	7.1e-51
WP_011054575.1|891837_892041_+	hypothetical protein	NA	A0A1P8VVP9	Streptococcus_phage	100.0	3.1e-07
WP_011106747.1|892037_892322_+	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	87.2	6.1e-38
WP_011054573.1|892911_893313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054572.1|893312_893948_+	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.9	2.2e-88
WP_011054571.1|894220_894661_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	98.6	2.1e-77
WP_002985375.1|895246_895585_+	HNH endonuclease	NA	J7KH36	Streptococcus_phage	90.7	3.0e-55
WP_011054569.1|895756_896224_+|terminase	phage terminase small subunit P27 family	terminase	J7KC46	Streptococcus_phage	99.4	3.0e-82
WP_011054568.1|896238_897993_+	hypothetical protein	NA	J7KKD1	Streptococcus_phage	97.3	0.0e+00
WP_011054567.1|897989_898160_+	hypothetical protein	NA	J7KK43	Streptococcus_phage	58.3	3.0e-08
WP_011054566.1|898152_898419_+	hypothetical protein	NA	Q938K9	Temperate_phage	86.4	6.2e-32
WP_011054565.1|898452_899673_+|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.4	1.0e-185
WP_011054564.1|899650_900316_+|protease	Clp protease ClpP	protease	M1Q115	Streptococcus_phage	79.0	5.4e-93
WP_011054563.1|900341_901526_+|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	84.5	1.2e-180
WP_011054561.1|901670_901973_+|head,tail	phage head-tail connector protein	head,tail	J7KC36	Streptococcus_phage	86.7	1.1e-42
WP_011054560.1|901969_902308_+|head	phage head closure protein	head	J7KJ42	Streptococcus_phage	80.0	8.1e-45
WP_011054559.1|902304_902682_+	HK97 gp10 family phage protein	NA	J7KDM3	Streptococcus_phage	75.2	2.5e-47
WP_011054558.1|902678_903104_+	hypothetical protein	NA	J7KBZ9	Streptococcus_phage	85.1	1.7e-68
WP_011054557.1|903122_903734_+	hypothetical protein	NA	J7KKC8	Streptococcus_phage	76.2	3.8e-77
WP_011054556.1|903786_904113_+	hypothetical protein	NA	J7KK85	Streptococcus_phage	75.9	1.3e-39
WP_023609816.1|904160_904310_+	hypothetical protein	NA	J7KBS0	Streptococcus_phage	83.7	5.0e-15
WP_011054554.1|904322_908246_+|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	48.9	4.6e-240
WP_011054553.1|908245_908953_+|tail	phage tail family protein	tail	Q938K2	Temperate_phage	69.8	2.4e-91
WP_023605202.1|908949_911097_+|tail	phage tail protein	tail	Q938K1	Temperate_phage	93.7	0.0e+00
WP_023609821.1|911096_912206_+	hyaluronidase HylP	NA	A7J2A8	Streptococcus_phage	71.8	4.9e-123
WP_011106754.1|912215_914234_+	gp58-like family protein	NA	Q938J9	Temperate_phage	71.6	4.4e-170
WP_002983467.1|914245_914677_+	DUF1617 family protein	NA	Q938J8	Temperate_phage	89.5	1.3e-63
WP_010922094.1|914679_915297_+	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	88.3	1.1e-76
WP_002987582.1|915306_915582_+	hypothetical protein	NA	A7J2B2	Streptococcus_phage	100.0	2.6e-41
WP_000609113.1|915578_915806_+|holin	phage holin	holin	A7J2B3	Streptococcus_phage	98.7	5.8e-31
WP_011054445.1|915921_917130_+	glucosaminidase domain-containing protein	NA	Q938J4	Temperate_phage	87.5	2.9e-214
WP_011054446.1|917245_917602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054447.1|917659_917899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054448.1|918162_918414_-	hypothetical protein	NA	A3F666	Streptococcus_phage	96.4	2.8e-42
WP_011054449.1|918554_918701_-	hypothetical protein	NA	A3F667	Streptococcus_phage	97.9	4.0e-17
WP_011054450.1|918854_919064_+	helix-turn-helix transcriptional regulator	NA	A3F668	Streptococcus_phage	100.0	1.2e-30
WP_029714017.1|919262_919445_+	hypothetical protein	NA	A3F673	Streptococcus_phage	71.7	1.0e-17
WP_011054451.1|920197_922030_+	elongation factor 4	NA	A0A2K9L2P9	Tupanvirus	41.0	2.2e-19
>prophage 7
NC_004606	Streptococcus pyogenes SSI-1, complete genome	1894275	1074429	1147543	1894275	integrase,terminase,holin,tRNA,portal,protease,capsid,tail	Streptococcus_phage(74.07%)	84	1071992:1072007	1147887:1147902
1071992:1072007	attL	TCCTTTGTTAGAAAAG	NA	NA	NA	NA
WP_011054534.1|1074429_1075314_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_011054535.1|1075429_1076770_-	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
WP_011054536.1|1076866_1077823_-	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_002993908.1|1077833_1078430_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_011054537.1|1078521_1081158_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_002989664.1|1081172_1081874_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	4.9e-36
WP_002984482.1|1081991_1082534_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002984480.1|1082676_1083318_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002994467.1|1083480_1083969_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002984476.1|1083979_1084180_-	CsbD family protein	NA	J7KJ36	Streptococcus_phage	50.0	1.8e-07
WP_002984475.1|1084220_1084760_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002984473.1|1084772_1084961_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_011106783.1|1084971_1085583_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_002984469.1|1085619_1085868_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_002989648.1|1086230_1088549_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.2	3.5e-131
WP_002992407.1|1089078_1090401_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_011054539.1|1090520_1091756_+	cation diffusion facilitator family transporter	NA	NA	NA	NA	NA
WP_011054540.1|1092125_1092899_-	CAMP factor pore-forming toxin Cfa	NA	NA	NA	NA	NA
WP_002989634.1|1093268_1094105_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002984457.1|1094120_1094750_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	1.3e-27
WP_011054541.1|1094759_1095401_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_002989626.1|1095507_1095843_-	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
WP_002984451.1|1096038_1097853_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.9	5.2e-98
WP_002984449.1|1098028_1098586_-	signal peptidase I	NA	NA	NA	NA	NA
WP_011054543.1|1098803_1100306_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_011054544.1|1100368_1101382_-	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_011054545.1|1101461_1104572_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.8	2.2e-120
WP_002989617.1|1104756_1105128_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002984437.1|1105127_1105826_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
WP_002984433.1|1105835_1106621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002989607.1|1106751_1107366_-	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
WP_011054546.1|1107956_1108145_-	hypothetical protein	NA	A3F673	Streptococcus_phage	84.7	1.2e-21
WP_002988472.1|1108257_1109040_-	exotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	45.8	4.3e-49
WP_011054547.1|1109252_1110377_-	Fic family protein	NA	D7RWK9	Brochothrix_phage	48.8	2.0e-92
WP_011054548.1|1110514_1111723_-	glucosaminidase domain-containing protein	NA	Q938J4	Temperate_phage	87.6	2.3e-214
WP_011054444.1|1111838_1112066_-|holin	phage holin	holin	A7J2B3	Streptococcus_phage	98.7	7.6e-31
WP_011017397.1|1112062_1112335_-	hypothetical protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
WP_011106786.1|1112346_1112979_-	hypothetical protein	NA	Q938J7	Temperate_phage	49.0	4.4e-44
WP_002988448.1|1112981_1113410_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
WP_011054442.1|1113421_1115326_-	gp58-like family protein	NA	Q938J9	Temperate_phage	83.8	1.5e-212
WP_041174278.1|1116338_1118390_-|tail	phage tail protein	tail	A3F656	Streptococcus_phage	85.2	0.0e+00
WP_011017392.1|1118386_1119157_-|tail	phage tail family protein	tail	A3F655	Streptococcus_phage	87.5	2.1e-128
WP_011054439.1|1119169_1123270_-|tail	phage tail tape measure protein	tail	A3F654	Streptococcus_phage	68.4	0.0e+00
WP_011017390.1|1123495_1123798_-	hypothetical protein	NA	A3F652	Streptococcus_phage	96.0	1.8e-48
WP_011017389.1|1123890_1124475_-|tail	tail protein	tail	A3F651	Streptococcus_phage	90.2	3.1e-92
WP_011017388.1|1124486_1124867_-	hypothetical protein	NA	A3F650	Streptococcus_phage	99.2	7.4e-63
WP_011017387.1|1124859_1125258_-	HK97 gp10 family phage protein	NA	A3F649	Streptococcus_phage	100.0	2.9e-70
WP_011017386.1|1125259_1125622_-	hypothetical protein	NA	A3F648	Streptococcus_phage	97.5	1.1e-60
WP_011054437.1|1125614_1125923_-	hypothetical protein	NA	A3F647	Streptococcus_phage	98.0	7.8e-47
WP_011017384.1|1125922_1126096_-	hypothetical protein	NA	A3F646	Streptococcus_phage	94.7	6.4e-22
WP_011017383.1|1126109_1127243_-|capsid	phage major capsid protein	capsid	A3F645	Streptococcus_phage	96.8	3.2e-202
WP_011017382.1|1127259_1128066_-|protease	Clp protease ClpP	protease	A3F644	Streptococcus_phage	98.1	4.6e-147
WP_011017381.1|1128046_1129234_-|portal	phage portal protein	portal	A3F643	Streptococcus_phage	96.2	5.6e-218
WP_032461344.1|1129386_1129611_-	hypothetical protein	NA	A3F642	Streptococcus_phage	97.3	2.0e-36
WP_011017380.1|1129601_1131332_-|terminase	terminase large subunit	terminase	A3F641	Streptococcus_phage	97.0	0.0e+00
WP_011017379.1|1131344_1131662_-|terminase	P27 family phage terminase small subunit	terminase	A3F640	Streptococcus_phage	99.0	3.9e-49
WP_011054436.1|1131802_1132075_-	HNH endonuclease	NA	A3F639	Streptococcus_phage	95.6	4.8e-48
WP_011017377.1|1132100_1132487_-	hypothetical protein	NA	A3F638	Streptococcus_phage	93.0	1.4e-64
WP_011017376.1|1132512_1132716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011017375.1|1132773_1133067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054435.1|1133220_1133796_-|integrase	site-specific integrase	integrase	A3F636	Streptococcus_phage	99.5	7.4e-107
WP_011017373.1|1133955_1134357_-	hypothetical protein	NA	A3F635	Streptococcus_phage	100.0	2.7e-71
WP_011054433.1|1134371_1135199_-	prohibitin family protein	NA	A3F634	Streptococcus_phage	99.6	8.7e-117
WP_011054432.1|1135200_1135539_-	helix-turn-helix transcriptional regulator	NA	A3F633	Streptococcus_phage	92.0	1.5e-54
WP_011054431.1|1135535_1135817_-	hypothetical protein	NA	A3F632	Streptococcus_phage	92.2	4.5e-33
WP_011054429.1|1135982_1136495_-	DUF1642 domain-containing protein	NA	A0A141E0J6	Streptococcus_phage	42.5	4.1e-24
WP_011054428.1|1136499_1137132_-	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	65.7	3.4e-81
WP_011054427.1|1137133_1137418_-	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	88.3	3.6e-38
WP_011054426.1|1137414_1137849_-	hypothetical protein	NA	Q938M1	Temperate_phage	57.3	6.5e-31
WP_011054425.1|1137865_1138072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054424.1|1138085_1138313_-	hypothetical protein	NA	C5J991	Streptococcus_phage	47.9	2.7e-12
WP_011054422.1|1139124_1139886_-	conserved phage C-terminal domain-containing protein	NA	A0A220GFI5	Streptococcus_phage	55.3	1.5e-27
WP_011106800.1|1139878_1141234_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	84.7	9.3e-209
WP_032461348.1|1141205_1141394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011017359.1|1141514_1141706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054421.1|1141798_1142056_-	hypothetical protein	NA	A3F618	Streptococcus_phage	98.8	5.4e-41
WP_011017357.1|1142129_1142849_-	ORF6C domain-containing protein	NA	A3F617	Streptococcus_phage	78.7	4.6e-106
WP_011106801.1|1142890_1143400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054420.1|1143727_1143940_-	helix-turn-helix transcriptional regulator	NA	M1Q1B4	Streptococcus_phage	52.9	1.7e-13
WP_011017354.1|1143974_1144250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011017353.1|1144538_1144889_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SAD3	Streptococcus_phage	63.5	1.2e-35
WP_011017352.1|1144892_1145285_+	hypothetical protein	NA	A3F612	Streptococcus_phage	68.7	2.2e-38
WP_011017351.1|1145295_1146036_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A3F611	Streptococcus_phage	100.0	1.6e-130
WP_011017350.1|1146346_1147543_+|integrase	site-specific integrase	integrase	A3F610	Streptococcus_phage	99.0	3.9e-227
1147887:1147902	attR	TCCTTTGTTAGAAAAG	NA	NA	NA	NA
>prophage 8
NC_004606	Streptococcus pyogenes SSI-1, complete genome	1894275	1291895	1302499	1894275		Streptococcus_phage(57.14%)	9	NA	NA
WP_011054352.1|1291895_1293038_-	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
WP_011054351.1|1293272_1293713_+	membrane protein	NA	NA	NA	NA	NA
WP_002992648.1|1293742_1295020_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_002985132.1|1295099_1296452_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.0	4.5e-30
WP_011054350.1|1296672_1297014_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	39.3	1.3e-18
WP_002985136.1|1297074_1298241_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
WP_002985140.1|1298334_1299021_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
WP_011054349.1|1299017_1300181_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	5.8e-143
WP_011054348.1|1300288_1302499_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
>prophage 9
NC_004606	Streptococcus pyogenes SSI-1, complete genome	1894275	1563822	1569856	1894275		Streptococcus_phage(100.0%)	8	NA	NA
WP_011054224.1|1563822_1564650_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.5	3.8e-128
WP_002995120.1|1564723_1565080_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	66.7	2.8e-40
WP_011054223.1|1565377_1566007_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_002985833.1|1566053_1566446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054222.1|1566472_1567336_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	74.7	1.9e-114
WP_011054221.1|1567340_1567664_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	62.3	1.0e-28
WP_011054220.1|1568327_1569203_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	47.6	1.5e-71
WP_011054219.1|1569220_1569856_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
