assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000011025.1_ASM1102v1	NC_013715	Rothia mucilaginosa DY-18, complete genome	1	91009-91090	1	CRISPRCasFinder	no		csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	Orphan	GGACGTGTAGGCGCGCGGGGCAGG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	NA|272aa|up_7|NC_013715.1_81159_81975_+,NA|129aa|up_4|NC_013715.1_85466_85853_-,NA|276aa|down_4|NC_013715.1_96364_97192_-,NA|129aa|down_9|NC_013715.1_103233_103620_-	NA|194aa|up_9|NC_013715.1_79427_80009_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|224aa|up_8|NC_013715.1_80222_80894_+	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|272aa|up_7|NC_013715.1_81159_81975_+	NA	NA|351aa|up_6|NC_013715.1_82190_83243_-	PRK07589, PRK07589, ornithine cyclodeaminase; Validated	NA|534aa|up_5|NC_013715.1_83559_85161_-	PRK15049, PRK15049, L-asparagine permease	NA|129aa|up_4|NC_013715.1_85466_85853_-	NA	NA|342aa|up_3|NC_013715.1_86115_87141_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|194aa|up_2|NC_013715.1_87280_87862_-	pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD	NA|171aa|up_1|NC_013715.1_88200_88713_+	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|535aa|up_0|NC_013715.1_89103_90708_+	cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins	NA|554aa|down_0|NC_013715.1_91174_92836_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|387aa|down_1|NC_013715.1_92948_94109_-	COG4759, COG4759, Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_2|NC_013715.1_94222_94846_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|406aa|down_3|NC_013715.1_95004_96222_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|276aa|down_4|NC_013715.1_96364_97192_-	NA	NA|131aa|down_5|NC_013715.1_97550_97943_+	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|479aa|down_6|NC_013715.1_98018_99455_+	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|219aa|down_7|NC_013715.1_99580_100237_+	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB	NA|792aa|down_8|NC_013715.1_100533_102909_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|129aa|down_9|NC_013715.1_103233_103620_-	NA
GCF_000011025.1_ASM1102v1	NC_013715	Rothia mucilaginosa DY-18, complete genome	2	424250-424362	2	CRISPRCasFinder	no		csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	Orphan	CGCGACTTCGGCGGCCGTGATAACCGCCGCGATGG	35	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	NA|88aa|up_6|NC_013715.1_414493_414757_+,NA|129aa|up_3|NC_013715.1_416610_416997_+,NA|320aa|down_4|NC_013715.1_428711_429671_-	NA|446aa|up_9|NC_013715.1_410625_411963_-	PRK10811, rne, ribonuclease E; Reviewed	NA|445aa|up_8|NC_013715.1_412243_413578_+	pfam07179, SseB, SseB protein N-terminal domain	NA|197aa|up_7|NC_013715.1_413708_414299_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|88aa|up_6|NC_013715.1_414493_414757_+	NA	NA|295aa|up_5|NC_013715.1_414896_415781_+	PRK03072, PRK03072, heat shock protein HtpX; Provisional	NA|164aa|up_4|NC_013715.1_415977_416469_-	cd11740, YajQ_like, Proteins similar to Escherichia coli YajQ	NA|129aa|up_3|NC_013715.1_416610_416997_+	NA	NA|126aa|up_2|NC_013715.1_417728_418106_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|388aa|up_1|NC_013715.1_418202_419366_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|621aa|up_0|NC_013715.1_419704_421567_+	pfam09852, DUF2079, Predicted membrane protein (DUF2079)	NA|334aa|down_0|NC_013715.1_425124_426126_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|151aa|down_1|NC_013715.1_426327_426780_+	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase	NA|154aa|down_2|NC_013715.1_426779_427241_+	cd03453, SAV4209_like, SAV4209_like	NA|369aa|down_3|NC_013715.1_427488_428595_+	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase	NA|320aa|down_4|NC_013715.1_428711_429671_-	NA	NA|475aa|down_5|NC_013715.1_429803_431228_-	TIGR00895, transport_protein, benzoate transport	NA|130aa|down_6|NC_013715.1_431443_431833_+	pfam09656, PGPGW, Putative transmembrane protein (PGPGW)	NA|380aa|down_7|NC_013715.1_431925_433065_-	PRK06598, PRK06598, aspartate-semialdehyde dehydrogenase; Reviewed	NA|222aa|down_8|NC_013715.1_433269_433935_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|294aa|down_9|NC_013715.1_433956_434838_-	pfam00303, Thymidylat_synt, Thymidylate synthase
GCF_000011025.1_ASM1102v1	NC_013715	Rothia mucilaginosa DY-18, complete genome	3	806896-806978	3	CRISPRCasFinder	no		csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	Orphan	GGGCGGGGGAGGGCTGTCGCGATTT	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	NA|180aa|up_3|NC_013715.1_801748_802288_-,NA|455aa|down_7|NC_013715.1_816496_817861_+	NA|364aa|up_9|NC_013715.1_791996_793088_-	TIGR03451, S-hydroxymethylmycothiol_dehydrogenase, S-(hydroxymethyl)mycothiol dehydrogenase	NA|344aa|up_8|NC_013715.1_793222_794254_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|456aa|up_7|NC_013715.1_794371_795739_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|494aa|up_6|NC_013715.1_796000_797482_-	pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo)	NA|706aa|up_5|NC_013715.1_797795_799913_-	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold	NA|159aa|up_4|NC_013715.1_800329_800806_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|180aa|up_3|NC_013715.1_801748_802288_-	NA	NA|601aa|up_2|NC_013715.1_802750_804553_+	PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit; Validated	NA|167aa|up_1|NC_013715.1_804552_805053_+	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed	NA|343aa|up_0|NC_013715.1_805318_806347_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|515aa|down_0|NC_013715.1_807227_808772_+	PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed	NA|256aa|down_1|NC_013715.1_809133_809901_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|918aa|down_2|NC_013715.1_809904_812658_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|106aa|down_3|NC_013715.1_812836_813154_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|120aa|down_4|NC_013715.1_813150_813510_+	COG2361, COG2361, Uncharacterized conserved protein [Function unknown]	NA|276aa|down_5|NC_013715.1_813631_814459_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|468aa|down_6|NC_013715.1_814504_815908_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|455aa|down_7|NC_013715.1_816496_817861_+	NA	NA|352aa|down_8|NC_013715.1_818129_819185_+	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional	NA|366aa|down_9|NC_013715.1_819622_820720_+	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional
GCF_000011025.1_ASM1102v1	NC_013715	Rothia mucilaginosa DY-18, complete genome	4	1292143-1292224	4	CRISPRCasFinder	no		csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	Orphan	ACTCCCCCGCGAGCGTTGTCCGGT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	NA|83aa|up_5|NC_013715.1_1285184_1285433_+,NA|349aa|up_2|NC_013715.1_1287781_1288828_-,NA	NA|485aa|up_9|NC_013715.1_1277537_1278992_-	PRK07899, rpsA, 30S ribosomal protein S1; Reviewed	NA|1004aa|up_8|NC_013715.1_1279694_1282706_-	TIGR00593, DNA_polymerase_I, DNA polymerase I	NA|426aa|up_7|NC_013715.1_1283151_1284429_+	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|169aa|up_6|NC_013715.1_1284564_1285071_+	TIGR00369, Putative_esterase, uncharacterized domain 1	NA|83aa|up_5|NC_013715.1_1285184_1285433_+	NA	NA|204aa|up_4|NC_013715.1_1285671_1286283_-	COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms]	NA|301aa|up_3|NC_013715.1_1286721_1287624_+	pfam18476, PIN_8, PIN like domain	NA|349aa|up_2|NC_013715.1_1287781_1288828_-	NA	NA|370aa|up_1|NC_013715.1_1289052_1290162_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|473aa|up_0|NC_013715.1_1290342_1291761_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|272aa|down_0|NC_013715.1_1292243_1293059_-	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|537aa|down_1|NC_013715.1_1293073_1294684_-	PRK13571, PRK13571, anthranilate synthase component I; Provisional	NA|159aa|down_2|NC_013715.1_1294983_1295460_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|279aa|down_3|NC_013715.1_1295515_1296352_-	cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA)	NA|431aa|down_4|NC_013715.1_1296360_1297653_-	pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase	NA|437aa|down_5|NC_013715.1_1297903_1299214_-	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|244aa|down_6|NC_013715.1_1299214_1299946_-	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter	NA|424aa|down_7|NC_013715.1_1301879_1303151_-	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II	NA|81aa|down_8|NC_013715.1_1303369_1303612_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|342aa|down_9|NC_013715.1_1303814_1304840_-	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3
GCF_000011025.1_ASM1102v1	NC_013715	Rothia mucilaginosa DY-18, complete genome	5	1301586-1301674	5	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	Unclear	GCACTCCCCCGCGAGCGGCGTCCGGTATGC	30	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	NA|349aa|up_9|NC_013715.1_1287781_1288828_-,NA	NA|349aa|up_9|NC_013715.1_1287781_1288828_-	NA	NA|370aa|up_8|NC_013715.1_1289052_1290162_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|473aa|up_7|NC_013715.1_1290342_1291761_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|272aa|up_6|NC_013715.1_1292243_1293059_-	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|537aa|up_5|NC_013715.1_1293073_1294684_-	PRK13571, PRK13571, anthranilate synthase component I; Provisional	NA|159aa|up_4|NC_013715.1_1294983_1295460_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|279aa|up_3|NC_013715.1_1295515_1296352_-	cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA)	NA|431aa|up_2|NC_013715.1_1296360_1297653_-	pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase	NA|437aa|up_1|NC_013715.1_1297903_1299214_-	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|244aa|up_0|NC_013715.1_1299214_1299946_-	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter	NA|424aa|down_0|NC_013715.1_1301879_1303151_-	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II	NA|81aa|down_1|NC_013715.1_1303369_1303612_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|342aa|down_2|NC_013715.1_1303814_1304840_-	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|300aa|down_3|NC_013715.1_1304957_1305857_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|368aa|down_4|NC_013715.1_1306108_1307212_-	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|599aa|down_5|NC_013715.1_1307452_1309249_-	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|513aa|down_6|NC_013715.1_1309327_1310866_-	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|133aa|down_7|NC_013715.1_1310865_1311264_-	PRK12497, PRK12497, YraN family protein	NA|109aa|down_8|NC_013715.1_1311650_1311977_-	pfam10611, DUF2469, Protein of unknown function (DUF2469)	NA|276aa|down_9|NC_013715.1_1312075_1312903_-	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like
GCF_000011025.1_ASM1102v1	NC_013715	Rothia mucilaginosa DY-18, complete genome	6	1376010-1376758	6,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csb3,cas3,csb2gr5,csb1gr7,cas2,cas1	csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	Unclear	CCTCAATGAAAGTCCCCGCCCGAA,CCTCAATGAAAGTCCCCNCCCGAANGC,CCTCAATGAAAGTCCCCGCCCGAAGGCGGGGAAAT	24,27,35	0	0	NA	NA	NA:NA:NA	10,10,9	10	Unclear	csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	NA|235aa|up_9|NC_013715.1_1356882_1357587_+,NA|289aa|up_8|NC_013715.1_1357760_1358627_+,NA|360aa|up_5|NC_013715.1_1365486_1366566_-,NA|395aa|down_4|NC_013715.1_1385256_1386441_+,NA|61aa|down_7|NC_013715.1_1388776_1388959_+	NA|235aa|up_9|NC_013715.1_1356882_1357587_+	NA	NA|289aa|up_8|NC_013715.1_1357760_1358627_+	NA	NA|731aa|up_7|NC_013715.1_1359291_1361484_-	cd05819, NHL, NHL repeat unit of beta-propeller proteins	NA|1020aa|up_6|NC_013715.1_1362056_1365116_-	cd05819, NHL, NHL repeat unit of beta-propeller proteins	NA|360aa|up_5|NC_013715.1_1365486_1366566_-	NA	NA|252aa|up_4|NC_013715.1_1367058_1367814_+	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter	csb3|355aa|up_3|NC_013715.1_1367969_1369034_-	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas3|946aa|up_2|NC_013715.1_1369033_1371871_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb2gr5|530aa|up_1|NC_013715.1_1371863_1373453_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	csb1gr7|429aa|up_0|NC_013715.1_1373454_1374741_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	cas2|101aa|down_0|NC_013715.1_1376984_1377287_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|537aa|down_1|NC_013715.1_1377283_1378894_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|352aa|down_2|NC_013715.1_1382773_1383829_-	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|243aa|down_3|NC_013715.1_1384526_1385255_+	PRK02888, PRK02888, nitrous-oxide reductase; Validated	NA|395aa|down_4|NC_013715.1_1385256_1386441_+	NA	NA|239aa|down_5|NC_013715.1_1386627_1387344_+	pfam11702, DUF3295, Protein of unknown function (DUF3295)	NA|337aa|down_6|NC_013715.1_1387673_1388684_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|61aa|down_7|NC_013715.1_1388776_1388959_+	NA	NA|167aa|down_8|NC_013715.1_1389096_1389597_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|149aa|down_9|NC_013715.1_1389671_1390118_+	pfam01641, SelR, SelR domain
GCF_000011025.1_ASM1102v1	NC_013715	Rothia mucilaginosa DY-18, complete genome	7	1379239-1380291	7,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csb3,cas3,csb2gr5,csb1gr7,cas2,cas1	csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	Unclear	CCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT,CCTCAATGAAAGNCCNTNCNAAAANGNAGGGAAAT,CCTCAATGAAAGCCCTTCC	36,35,19	0	0	NA	NA	NA:NA:NA	13,14,6	14	Unclear	csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	NA|360aa|up_7|NC_013715.1_1365486_1366566_-,NA|395aa|down_2|NC_013715.1_1385256_1386441_+,NA|61aa|down_5|NC_013715.1_1388776_1388959_+	NA|731aa|up_9|NC_013715.1_1359291_1361484_-	cd05819, NHL, NHL repeat unit of beta-propeller proteins	NA|1020aa|up_8|NC_013715.1_1362056_1365116_-	cd05819, NHL, NHL repeat unit of beta-propeller proteins	NA|360aa|up_7|NC_013715.1_1365486_1366566_-	NA	NA|252aa|up_6|NC_013715.1_1367058_1367814_+	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter	csb3|355aa|up_5|NC_013715.1_1367969_1369034_-	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas3|946aa|up_4|NC_013715.1_1369033_1371871_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb2gr5|530aa|up_3|NC_013715.1_1371863_1373453_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	csb1gr7|429aa|up_2|NC_013715.1_1373454_1374741_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	cas2|101aa|up_1|NC_013715.1_1376984_1377287_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|537aa|up_0|NC_013715.1_1377283_1378894_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|352aa|down_0|NC_013715.1_1382773_1383829_-	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|243aa|down_1|NC_013715.1_1384526_1385255_+	PRK02888, PRK02888, nitrous-oxide reductase; Validated	NA|395aa|down_2|NC_013715.1_1385256_1386441_+	NA	NA|239aa|down_3|NC_013715.1_1386627_1387344_+	pfam11702, DUF3295, Protein of unknown function (DUF3295)	NA|337aa|down_4|NC_013715.1_1387673_1388684_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|61aa|down_5|NC_013715.1_1388776_1388959_+	NA	NA|167aa|down_6|NC_013715.1_1389096_1389597_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|149aa|down_7|NC_013715.1_1389671_1390118_+	pfam01641, SelR, SelR domain	NA|422aa|down_8|NC_013715.1_1390332_1391598_+	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis]	NA|177aa|down_9|NC_013715.1_1391800_1392331_+	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes
GCF_000011025.1_ASM1102v1	NC_013715	Rothia mucilaginosa DY-18, complete genome	8	1380324-1382397	3,8,3,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	csb3,cas3,csb2gr5,csb1gr7,cas2,cas1	csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	Unclear	TGAGGCCTCAATGAAAGCCCCTCCGAAAAGGAAGGGAAATC,CCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT,CCTCAATGAAAGNCCNTCCNAAAAGGAAGGGAAA,CCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	41,36,34,35	0	0	NA	NA	NA:NA:NA:NA	17,28,28,17	28	Unclear	csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	NA|360aa|up_7|NC_013715.1_1365486_1366566_-,NA|395aa|down_2|NC_013715.1_1385256_1386441_+,NA|61aa|down_5|NC_013715.1_1388776_1388959_+	NA|731aa|up_9|NC_013715.1_1359291_1361484_-	cd05819, NHL, NHL repeat unit of beta-propeller proteins	NA|1020aa|up_8|NC_013715.1_1362056_1365116_-	cd05819, NHL, NHL repeat unit of beta-propeller proteins	NA|360aa|up_7|NC_013715.1_1365486_1366566_-	NA	NA|252aa|up_6|NC_013715.1_1367058_1367814_+	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter	csb3|355aa|up_5|NC_013715.1_1367969_1369034_-	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas3|946aa|up_4|NC_013715.1_1369033_1371871_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb2gr5|530aa|up_3|NC_013715.1_1371863_1373453_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	csb1gr7|429aa|up_2|NC_013715.1_1373454_1374741_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	cas2|101aa|up_1|NC_013715.1_1376984_1377287_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|537aa|up_0|NC_013715.1_1377283_1378894_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|352aa|down_0|NC_013715.1_1382773_1383829_-	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|243aa|down_1|NC_013715.1_1384526_1385255_+	PRK02888, PRK02888, nitrous-oxide reductase; Validated	NA|395aa|down_2|NC_013715.1_1385256_1386441_+	NA	NA|239aa|down_3|NC_013715.1_1386627_1387344_+	pfam11702, DUF3295, Protein of unknown function (DUF3295)	NA|337aa|down_4|NC_013715.1_1387673_1388684_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|61aa|down_5|NC_013715.1_1388776_1388959_+	NA	NA|167aa|down_6|NC_013715.1_1389096_1389597_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|149aa|down_7|NC_013715.1_1389671_1390118_+	pfam01641, SelR, SelR domain	NA|422aa|down_8|NC_013715.1_1390332_1391598_+	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis]	NA|177aa|down_9|NC_013715.1_1391800_1392331_+	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes
GCF_000011025.1_ASM1102v1	NC_013715	Rothia mucilaginosa DY-18, complete genome	9	1498621-1498697	9	CRISPRCasFinder	no		csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	Orphan	GCGTCAGCGCCGCGGCGAAGCGTAA	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	NA|621aa|up_3|NC_013715.1_1493253_1495116_+,NA|86aa|up_1|NC_013715.1_1496252_1496510_-,NA	NA|154aa|up_9|NC_013715.1_1478335_1478797_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|1505aa|up_8|NC_013715.1_1479082_1483597_+	TIGR01967, ATP-dependent_RNA_helicase_HrpA, RNA helicase HrpA	NA|458aa|up_7|NC_013715.1_1483981_1485355_-	pfam09985, Glucodextran_C, C-terminal binding-module, SLH-like, of glucodextranase	NA|332aa|up_6|NC_013715.1_1485632_1486628_-	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|1115aa|up_5|NC_013715.1_1487928_1491273_-	PRK14109, PRK14109, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	NA|447aa|up_4|NC_013715.1_1491491_1492832_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|621aa|up_3|NC_013715.1_1493253_1495116_+	NA	NA|305aa|up_2|NC_013715.1_1495182_1496097_+	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|86aa|up_1|NC_013715.1_1496252_1496510_-	NA	NA|304aa|up_0|NC_013715.1_1496769_1497681_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|152aa|down_0|NC_013715.1_1498830_1499286_-	PRK00464, nrdR, transcriptional repressor NrdR	NA|1181aa|down_1|NC_013715.1_1499461_1503004_-	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated	NA|329aa|down_2|NC_013715.1_1503090_1504077_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|226aa|down_3|NC_013715.1_1504214_1504892_-	PRK14772, PRK14772, lipoprotein signal peptidase; Provisional	NA|180aa|down_4|NC_013715.1_1505214_1505754_-	pfam05103, DivIVA, DivIVA protein	NA|100aa|down_5|NC_013715.1_1506258_1506558_-	pfam02325, YGGT, YGGT family	NA|294aa|down_6|NC_013715.1_1506568_1507450_-	pfam04472, SepF, Cell division protein SepF	NA|279aa|down_7|NC_013715.1_1507669_1508506_-	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins	NA|283aa|down_8|NC_013715.1_1508558_1509407_-	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase	NA|394aa|down_9|NC_013715.1_1509557_1510739_-	PRK09330, PRK09330, cell division protein FtsZ; Validated
GCF_000011025.1_ASM1102v1	NC_013715	Rothia mucilaginosa DY-18, complete genome	10	2232657-2232775	10	CRISPRCasFinder	no		csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	Orphan	ACTGGTAACCAGAACCAGCAGCGTTCTACCGC	32	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG	NA,NA|54aa|down_1|NC_013715.1_2233751_2233913_-,NA|477aa|down_6|NC_013715.1_2237136_2238567_-,NA|183aa|down_7|NC_013715.1_2238614_2239163_-	NA|451aa|up_9|NC_013715.1_2215346_2216699_+	PRK14853, nhaA, pH-dependent sodium/proton antiporter; Provisional	NA|1086aa|up_8|NC_013715.1_2216843_2220101_+	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX	NA|521aa|up_7|NC_013715.1_2220437_2222000_+	pfam01235, Na_Ala_symp, Sodium:alanine symporter family	NA|96aa|up_6|NC_013715.1_2222183_2222471_+	pfam13396, PLDc_N, Phospholipase_D-nuclease N-terminal	NA|294aa|up_5|NC_013715.1_2222928_2223810_+	pfam12401, DUF3662, Protein of unknown function (DUF2662)	NA|155aa|up_4|NC_013715.1_2223809_2224274_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|589aa|up_3|NC_013715.1_2224277_2226044_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|487aa|up_2|NC_013715.1_2226036_2227497_+	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]	NA|480aa|up_1|NC_013715.1_2227489_2228929_+	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|586aa|up_0|NC_013715.1_2228925_2230683_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|211aa|down_0|NC_013715.1_2233103_2233736_-	PRK07765, PRK07765, aminodeoxychorismate/anthranilate synthase component II	NA|54aa|down_1|NC_013715.1_2233751_2233913_-	NA	NA|250aa|down_2|NC_013715.1_2233932_2234682_-	cd05830, Sortase_E, Sortase domain found in the class E family of sortases	NA|105aa|down_3|NC_013715.1_2234841_2235156_+	pfam06781, CrgA, Cell division protein CrgA	NA|306aa|down_4|NC_013715.1_2235355_2236273_-	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|211aa|down_5|NC_013715.1_2236481_2237114_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|477aa|down_6|NC_013715.1_2237136_2238567_-	NA	NA|183aa|down_7|NC_013715.1_2238614_2239163_-	NA	NA|452aa|down_8|NC_013715.1_2243974_2245330_-	TIGR00665, DnaB, replicative DNA helicase	NA|400aa|down_9|NC_013715.1_2245435_2246635_-	cd03784, GT1_Gtf-like, UDP-glycosyltransferases and similar proteins
