assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000010985.1_ASM1098v1	NC_013939	Deferribacter desulfuricans SSM1, complete genome	1	311406-311545	1	CRISPRCasFinder	no		csa3,DEDDh,WYL,cas3,cas5,cas7,cas8b1,cas6,cas2,cas1,cas4,Cas9_archaeal	Orphan	ATGGTCCAGGATTTGGTAGAGGATATGGTATGATGGGGCCTGGA	44	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,cas3,cas5,cas7,cas8b1,cas6,cas2,cas1,cas4,Cas9_archaeal,c2c9_V-U4	NA|133aa|up_9|NC_013939.1_302089_302488_+,NA|126aa|up_8|NC_013939.1_302553_302931_+,NA|84aa|down_2|NC_013939.1_314119_314371_+	NA|133aa|up_9|NC_013939.1_302089_302488_+	NA	NA|126aa|up_8|NC_013939.1_302553_302931_+	NA	NA|777aa|up_7|NC_013939.1_302956_305287_+	cd07548, P-type_ATPase-Cd_Zn_Co_like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis CadA which appears to transport cadmium, zinc and cobalt but not copper out of the cell	NA|819aa|up_6|NC_013939.1_305424_307881_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|77aa|up_5|NC_013939.1_307899_308130_+	PRK10671, copA, copper-exporting P-type ATPase CopA	NA|91aa|up_4|NC_013939.1_308172_308445_+	cd10159, CsoR-like_DUF156_2, Uncharacterized family 2; belongs to a superfamily containing transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this family was previously known as part of DUF156	NA|79aa|up_3|NC_013939.1_308649_308886_+	COG3462, COG3462, Predicted membrane protein [Function unknown]	NA|464aa|up_2|NC_013939.1_308924_310316_+	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|139aa|up_1|NC_013939.1_310339_310756_+	pfam04246, RseC_MucC, Positive regulator of sigma(E), RseC/MucC	NA|129aa|up_0|NC_013939.1_310771_311158_+	cd14797, DUF302, Uncharacterized domain family DUF302	NA|81aa|down_0|NC_013939.1_311889_312132_+	COG3462, COG3462, Predicted membrane protein [Function unknown]	NA|255aa|down_1|NC_013939.1_313374_314139_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|84aa|down_2|NC_013939.1_314119_314371_+	NA	NA|214aa|down_3|NC_013939.1_314373_315015_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|63aa|down_4|NC_013939.1_315047_315236_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|674aa|down_5|NC_013939.1_315392_317414_-	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|337aa|down_6|NC_013939.1_317801_318812_+	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|317aa|down_7|NC_013939.1_318811_319762_+	PRK00035, hemH, ferrochelatase; Reviewed	NA|284aa|down_8|NC_013939.1_319764_320616_+	PRK12886, ubiA, prenyltransferase; Reviewed	NA|196aa|down_9|NC_013939.1_320612_321200_+	PRK05920, PRK05920, aromatic acid decarboxylase; Validated
GCF_000010985.1_ASM1098v1	NC_013939	Deferribacter desulfuricans SSM1, complete genome	2	514731-516696	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas5,cas7,cas8b1,cas6,cas2,cas1,cas4	csa3,DEDDh,WYL,cas3,cas5,cas7,cas8b1,cas6,cas2,cas1,cas4,Cas9_archaeal	Type I-B	GTTTCAATTCCTCATAGGCACTCTAAAAAC,GTTTCAATTCCTCTTAGGCACTCTAAAAAC,GTTTCAATTCCTCTTAGGCACTCTAAAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	29,29,29	29	TypeI-B	csa3,DEDDh,WYL,cas3,cas5,cas7,cas8b1,cas6,cas2,cas1,cas4,Cas9_archaeal,c2c9_V-U4	NA|61aa|up_1|NC_013939.1_513921_514104_+,NA|61aa|up_0|NC_013939.1_514323_514506_+,NA	NA|664aa|up_9|NC_013939.1_504796_506788_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|284aa|up_8|NC_013939.1_506774_507626_+	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	NA|635aa|up_7|NC_013939.1_507972_509877_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|275aa|up_6|NC_013939.1_509876_510701_+	cd01144, BtuF, Cobalamin binding protein BtuF	NA|172aa|up_5|NC_013939.1_510697_511213_+	pfam02572, CobA_CobO_BtuR, ATP:corrinoid adenosyltransferase BtuR/CobO/CobP	NA|318aa|up_4|NC_013939.1_511215_512169_+	pfam01032, FecCD, FecCD transport family	NA|270aa|up_3|NC_013939.1_512165_512975_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|265aa|up_2|NC_013939.1_512967_513762_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|61aa|up_1|NC_013939.1_513921_514104_+	NA	NA|61aa|up_0|NC_013939.1_514323_514506_+	NA	cas3|779aa|down_0|NC_013939.1_516926_519263_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|91aa|down_1|NC_013939.1_519249_519522_-	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|83aa|down_2|NC_013939.1_519522_519771_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	cas5|231aa|down_3|NC_013939.1_519842_520535_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|299aa|down_4|NC_013939.1_520886_521783_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|559aa|down_5|NC_013939.1_521834_523511_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas6|259aa|down_6|NC_013939.1_523494_524271_-	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas2|89aa|down_7|NC_013939.1_524315_524582_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|down_8|NC_013939.1_524585_525578_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|165aa|down_9|NC_013939.1_525584_526079_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83
GCF_000010985.1_ASM1098v1	NC_013939	Deferribacter desulfuricans SSM1, complete genome	3	526129-527564	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas5,cas7,cas8b1,cas6,cas2,cas1,cas4	csa3,DEDDh,WYL,cas3,cas5,cas7,cas8b1,cas6,cas2,cas1,cas4,Cas9_archaeal	Type I-B	GTTTCAATTCCTCATAGGCACTCTAAAAAC,GTTTCAATTCCTCATAGGCACTCTAAAAAC,GTTTCAATTCCTCATAGGCACTCTAAAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	21,21,13	21	TypeI-B	csa3,DEDDh,WYL,cas3,cas5,cas7,cas8b1,cas6,cas2,cas1,cas4,Cas9_archaeal,c2c9_V-U4	NA,NA	cas3|779aa|up_9|NC_013939.1_516926_519263_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|91aa|up_8|NC_013939.1_519249_519522_-	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|83aa|up_7|NC_013939.1_519522_519771_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	cas5|231aa|up_6|NC_013939.1_519842_520535_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|299aa|up_5|NC_013939.1_520886_521783_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|559aa|up_4|NC_013939.1_521834_523511_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas6|259aa|up_3|NC_013939.1_523494_524271_-	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas2|89aa|up_2|NC_013939.1_524315_524582_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|up_1|NC_013939.1_524585_525578_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|165aa|up_0|NC_013939.1_525584_526079_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|257aa|down_0|NC_013939.1_527870_528641_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|231aa|down_1|NC_013939.1_528637_529330_-	pfam04172, LrgB, LrgB-like family	NA|117aa|down_2|NC_013939.1_529322_529673_-	pfam03788, LrgA, LrgA family	NA|224aa|down_3|NC_013939.1_529819_530491_+	PRK00024, PRK00024, DNA repair protein RadC	NA|458aa|down_4|NC_013939.1_530487_531861_+	pfam13598, DUF4139, Domain of unknown function (DUF4139)	NA|296aa|down_5|NC_013939.1_531868_532756_+	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs	NA|193aa|down_6|NC_013939.1_532883_533462_-	TIGR01367, Orotate_phosphoribosyltransferase, orotate phosphoribosyltransferase, Thermus family	NA|232aa|down_7|NC_013939.1_533454_534150_-	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|1190aa|down_8|NC_013939.1_534193_537763_-	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|552aa|down_9|NC_013939.1_537995_539651_+	PRK08315, PRK08315, AMP-binding domain protein; Validated
GCF_000010985.1_ASM1098v1	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	1	77878-78375	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	c2c9_V-U4,cas3,cas5,cas7,cas8b1,cas6	c2c9_V-U4,cas3,cas5,cas7,cas8b1,cas6	Type I-B	GTTTCAACTCCTGATAGGTACAATATAAAC,GTTTCAACTCCTGATAGGTACAATATAAAC,GTTTCAACTCCTGATAGGTACAATATAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	7,7,6	7	TypeI-B	csa3,DEDDh,WYL,cas3,cas5,cas7,cas8b1,cas6,cas2,cas1,cas4,Cas9_archaeal,c2c9_V-U4	NA|190aa|up_8|NC_013940.1_69274_69844_-,NA|113aa|up_3|NC_013940.1_75257_75596_-,NA|77aa|up_2|NC_013940.1_75652_75883_-,NA|224aa|up_0|NC_013940.1_77148_77820_+,NA|300aa|down_5|NC_013940.1_86846_87746_+,NA|113aa|down_6|NC_013940.1_87747_88086_+,NA|115aa|down_7|NC_013940.1_88195_88540_+,NA|107aa|down_8|NC_013940.1_88577_88898_+,NA|159aa|down_9|NC_013940.1_88956_89433_+	NA|282aa|up_9|NC_013940.1_68432_69278_+	TIGR01420, pilT_fam, pilus retraction protein PilT	NA|190aa|up_8|NC_013940.1_69274_69844_-	NA	NA|191aa|up_7|NC_013940.1_70107_70680_-	PRK00601, dut, dUTP diphosphatase	NA|291aa|up_6|NC_013940.1_71056_71929_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|500aa|up_5|NC_013940.1_72100_73600_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]	NA|531aa|up_4|NC_013940.1_73658_75251_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|113aa|up_3|NC_013940.1_75257_75596_-	NA	NA|77aa|up_2|NC_013940.1_75652_75883_-	NA	NA|322aa|up_1|NC_013940.1_76161_77127_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|224aa|up_0|NC_013940.1_77148_77820_+	NA	cas3|802aa|down_0|NC_013940.1_78607_81013_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|232aa|down_1|NC_013940.1_81034_81730_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|303aa|down_2|NC_013940.1_81742_82651_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|629aa|down_3|NC_013940.1_82682_84569_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas6|257aa|down_4|NC_013940.1_84608_85379_-	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|300aa|down_5|NC_013940.1_86846_87746_+	NA	NA|113aa|down_6|NC_013940.1_87747_88086_+	NA	NA|115aa|down_7|NC_013940.1_88195_88540_+	NA	NA|107aa|down_8|NC_013940.1_88577_88898_+	NA	NA|159aa|down_9|NC_013940.1_88956_89433_+	NA
GCF_000010985.1_ASM1098v1	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	2	85558-86387	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas5,cas7,cas8b1,cas6,c2c9_V-U4	c2c9_V-U4,cas3,cas5,cas7,cas8b1,cas6	Type I-B	GTTTCAACTCCTGATAGGTACAATATAAAC,GTTTCAACTCCTGATAGGTACAATATAAAC,GTTTCAACTCCTGATAGGTACAATATAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	12,12,11	12	TypeI-B	csa3,DEDDh,WYL,cas3,cas5,cas7,cas8b1,cas6,cas2,cas1,cas4,Cas9_archaeal,c2c9_V-U4	NA|113aa|up_8|NC_013940.1_75257_75596_-,NA|77aa|up_7|NC_013940.1_75652_75883_-,NA|224aa|up_5|NC_013940.1_77148_77820_+,NA|300aa|down_0|NC_013940.1_86846_87746_+,NA|113aa|down_1|NC_013940.1_87747_88086_+,NA|115aa|down_2|NC_013940.1_88195_88540_+,NA|107aa|down_3|NC_013940.1_88577_88898_+,NA|159aa|down_4|NC_013940.1_88956_89433_+,NA|351aa|down_6|NC_013940.1_90358_91411_-,NA|199aa|down_7|NC_013940.1_91448_92045_-,NA|636aa|down_8|NC_013940.1_92213_94121_+,NA|268aa|down_9|NC_013940.1_94289_95093_+	NA|531aa|up_9|NC_013940.1_73658_75251_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|113aa|up_8|NC_013940.1_75257_75596_-	NA	NA|77aa|up_7|NC_013940.1_75652_75883_-	NA	NA|322aa|up_6|NC_013940.1_76161_77127_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|224aa|up_5|NC_013940.1_77148_77820_+	NA	cas3|802aa|up_4|NC_013940.1_78607_81013_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|232aa|up_3|NC_013940.1_81034_81730_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|303aa|up_2|NC_013940.1_81742_82651_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|629aa|up_1|NC_013940.1_82682_84569_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas6|257aa|up_0|NC_013940.1_84608_85379_-	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|300aa|down_0|NC_013940.1_86846_87746_+	NA	NA|113aa|down_1|NC_013940.1_87747_88086_+	NA	NA|115aa|down_2|NC_013940.1_88195_88540_+	NA	NA|107aa|down_3|NC_013940.1_88577_88898_+	NA	NA|159aa|down_4|NC_013940.1_88956_89433_+	NA	NA|203aa|down_5|NC_013940.1_89578_90187_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|351aa|down_6|NC_013940.1_90358_91411_-	NA	NA|199aa|down_7|NC_013940.1_91448_92045_-	NA	NA|636aa|down_8|NC_013940.1_92213_94121_+	NA	NA|268aa|down_9|NC_013940.1_94289_95093_+	NA
