assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000010805.1_ASM1080v1	NC_012522	Rhodococcus opacus B4, complete genome	1	2893257-2893367	1	CRISPRCasFinder	no		csa3,cas14j,RT,WYL,cas4,DEDDh,Cas9_archaeal,DinG,casR,Cas14u_CAS-V,cas3,c2c9_V-U4	Orphan	ACAGCTACGAAGAGGTATGCGTAGCGA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,RT,WYL,cas4,DEDDh,Cas9_archaeal,DinG,casR,Cas14u_CAS-V,cas3,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5	NA|127aa|up_6|NC_012522.1_2888179_2888560_-,NA|207aa|up_5|NC_012522.1_2888708_2889329_-,NA|181aa|up_3|NC_012522.1_2890530_2891073_+,NA|154aa|up_1|NC_012522.1_2891680_2892142_+,NA|124aa|up_0|NC_012522.1_2892183_2892555_+,NA	NA|546aa|up_9|NC_012522.1_2884854_2886492_-	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]	NA|310aa|up_8|NC_012522.1_2886488_2887418_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|235aa|up_7|NC_012522.1_2887426_2888131_-	pfam17933, TetR_C_25, Tetracyclin repressor-like, C-terminal domain	NA|127aa|up_6|NC_012522.1_2888179_2888560_-	NA	NA|207aa|up_5|NC_012522.1_2888708_2889329_-	NA	NA|297aa|up_4|NC_012522.1_2889511_2890402_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|181aa|up_3|NC_012522.1_2890530_2891073_+	NA	NA|158aa|up_2|NC_012522.1_2891128_2891602_-	cd07825, SRPBCC_7, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|154aa|up_1|NC_012522.1_2891680_2892142_+	NA	NA|124aa|up_0|NC_012522.1_2892183_2892555_+	NA	NA|432aa|down_0|NC_012522.1_2893531_2894827_+	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters	NA|455aa|down_1|NC_012522.1_2894835_2896200_+	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|422aa|down_2|NC_012522.1_2896196_2897462_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|265aa|down_3|NC_012522.1_2897458_2898253_+	PRK06494, PRK06494, enoyl-CoA hydratase; Provisional	NA|305aa|down_4|NC_012522.1_2898274_2899189_+	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|258aa|down_5|NC_012522.1_2899188_2899962_+	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR	NA|492aa|down_6|NC_012522.1_2899993_2901469_+	cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like	NA|473aa|down_7|NC_012522.1_2901660_2903079_+	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|407aa|down_8|NC_012522.1_2903120_2904341_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|159aa|down_9|NC_012522.1_2904410_2904887_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]
GCF_000010805.1_ASM1080v1	NC_012522	Rhodococcus opacus B4, complete genome	2	6170929-6171023	2	CRISPRCasFinder	no		csa3,cas14j,RT,WYL,cas4,DEDDh,Cas9_archaeal,DinG,casR,Cas14u_CAS-V,cas3,c2c9_V-U4	Orphan	TACGGCCAGAGCGCCCCGCAGGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,RT,WYL,cas4,DEDDh,Cas9_archaeal,DinG,casR,Cas14u_CAS-V,cas3,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5	NA|650aa|up_3|NC_012522.1_6165419_6167369_+,NA|477aa|down_0|NC_012522.1_6171747_6173178_+,NA|78aa|down_3|NC_012522.1_6175518_6175752_-,NA|104aa|down_7|NC_012522.1_6179484_6179796_+	NA|260aa|up_9|NC_012522.1_6157000_6157780_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|551aa|up_8|NC_012522.1_6157781_6159434_-	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|485aa|up_7|NC_012522.1_6159503_6160958_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|99aa|up_6|NC_012522.1_6160994_6161291_-	PRK07857, PRK07857, chorismate mutase	NA|828aa|up_5|NC_012522.1_6161564_6164048_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|354aa|up_4|NC_012522.1_6164126_6165188_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|650aa|up_3|NC_012522.1_6165419_6167369_+	NA	NA|390aa|up_2|NC_012522.1_6167538_6168708_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|301aa|up_1|NC_012522.1_6168723_6169626_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|209aa|up_0|NC_012522.1_6169686_6170313_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|477aa|down_0|NC_012522.1_6171747_6173178_+	NA	NA|227aa|down_1|NC_012522.1_6173233_6173914_+	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|519aa|down_2|NC_012522.1_6173906_6175463_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|78aa|down_3|NC_012522.1_6175518_6175752_-	NA	NA|289aa|down_4|NC_012522.1_6176155_6177022_+	pfam18741, MTES_1575, REase_MTES_1575	NA|364aa|down_5|NC_012522.1_6177227_6178319_+	pfam01520, Amidase_3, N-acetylmuramoyl-L-alanine amidase	NA|322aa|down_6|NC_012522.1_6178319_6179285_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|104aa|down_7|NC_012522.1_6179484_6179796_+	NA	NA|462aa|down_8|NC_012522.1_6179950_6181336_+	COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism]	NA|658aa|down_9|NC_012522.1_6181335_6183309_+	COG4867, COG4867, Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
GCF_000010805.1_ASM1080v1	NC_012522	Rhodococcus opacus B4, complete genome	3	6211320-6211400	3	CRISPRCasFinder	no		csa3,cas14j,RT,WYL,cas4,DEDDh,Cas9_archaeal,DinG,casR,Cas14u_CAS-V,cas3,c2c9_V-U4	Orphan	CGGGACGCTTTGCCACTCACCTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,RT,WYL,cas4,DEDDh,Cas9_archaeal,DinG,casR,Cas14u_CAS-V,cas3,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5	NA|155aa|up_2|NC_012522.1_6208700_6209165_-,NA	NA|477aa|up_9|NC_012522.1_6196804_6198235_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|208aa|up_8|NC_012522.1_6198339_6198963_+	PRK10668, PRK10668, DNA-binding transcriptional repressor AcrR; Provisional	NA|549aa|up_7|NC_012522.1_6198972_6200619_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|413aa|up_6|NC_012522.1_6200636_6201875_-	pfam07690, MFS_1, Major Facilitator Superfamily	NA|509aa|up_5|NC_012522.1_6202164_6203691_+	pfam07905, PucR, Purine catabolism regulatory protein-like family	NA|473aa|up_4|NC_012522.1_6203715_6205134_-	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	NA|1061aa|up_3|NC_012522.1_6205130_6208313_-	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase	NA|155aa|up_2|NC_012522.1_6208700_6209165_-	NA	NA|310aa|up_1|NC_012522.1_6209179_6210109_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|351aa|up_0|NC_012522.1_6210250_6211303_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|97aa|down_0|NC_012522.1_6211462_6211753_+	pfam03713, DUF305, Domain of unknown function (DUF305)	NA|85aa|down_1|NC_012522.1_6211814_6212069_-	PRK13401, PRK13401, 30S ribosomal protein S18; Provisional	NA|102aa|down_2|NC_012522.1_6212078_6212384_-	PRK08881, rpsN, 30S ribosomal protein S14; Reviewed	NA|56aa|down_3|NC_012522.1_6212396_6212564_-	PRK00595, rpmG, 50S ribosomal protein L33; Validated	NA|79aa|down_4|NC_012522.1_6212563_6212800_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|422aa|down_5|NC_012522.1_6212897_6214163_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|85aa|down_6|NC_012522.1_6214159_6214414_+	PRK01678, rpmE2, type B 50S ribosomal protein L31	NA|203aa|down_7|NC_012522.1_6214482_6215091_+	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|229aa|down_8|NC_012522.1_6215158_6215845_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|493aa|down_9|NC_012522.1_6215844_6217323_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_000010805.1_ASM1080v1	NC_006969	Rhodococcus opacus B4 plasmid pKNR01, complete sequence	1	2143-2234	1	CRISPRCasFinder	no			Orphan	AATTATTTAAGAGTCTCGCTAGC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,RT,WYL,cas4,DEDDh,Cas9_archaeal,DinG,casR,Cas14u_CAS-V,cas3,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5	NA|94aa|up_2|NC_006969.2_366_648_-,NA|102aa|down_0|NC_006969.2_2766_3072_-,NA|195aa|down_1|NC_006969.2_3256_3841_+,NA|61aa|down_2|NC_006969.2_3935_4118_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|94aa|up_2|NC_006969.2_366_648_-	NA	NA|89aa|up_1|NC_006969.2_911_1178_-	pfam08281, Sigma70_r4_2, Sigma-70, region 4	NA|305aa|up_0|NC_006969.2_1177_2092_-	pfam03090, Replicase, Replicase family	NA|102aa|down_0|NC_006969.2_2766_3072_-	NA	NA|195aa|down_1|NC_006969.2_3256_3841_+	NA	NA|61aa|down_2|NC_006969.2_3935_4118_+	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
GCF_000010805.1_ASM1080v1	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	1	173720-173827	1	CRISPRCasFinder	no		DEDDh,csf1gr8,csf4gr11,csf2gr7,csf3gr5,RT,csa3	Orphan	ATCGGGTACCTCCGGGCCGGTCTGATC	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,RT,WYL,cas4,DEDDh,Cas9_archaeal,DinG,casR,Cas14u_CAS-V,cas3,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5	NA,NA|206aa|down_2|NC_012520.1_178236_178854_-,NA|162aa|down_5|NC_012520.1_180846_181332_-	NA|121aa|up_9|NC_012520.1_158696_159059_-	pfam04505, CD225, Interferon-induced transmembrane protein	NA|254aa|up_8|NC_012520.1_159370_160132_-	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|296aa|up_7|NC_012520.1_160052_160940_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|399aa|up_6|NC_012520.1_162746_163943_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|354aa|up_5|NC_012520.1_164174_165236_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|779aa|up_4|NC_012520.1_165232_167569_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|179aa|up_3|NC_012520.1_169068_169605_-	pfam00582, Usp, Universal stress protein family	NA|122aa|up_2|NC_012520.1_169629_169995_-	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|175aa|up_1|NC_012520.1_169991_170516_-	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|479aa|up_0|NC_012520.1_172191_173628_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|253aa|down_0|NC_012520.1_176793_177552_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|228aa|down_1|NC_012520.1_177548_178232_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|206aa|down_2|NC_012520.1_178236_178854_-	NA	NA|311aa|down_3|NC_012520.1_179121_180054_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|225aa|down_4|NC_012520.1_180164_180839_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|162aa|down_5|NC_012520.1_180846_181332_-	NA	NA|54aa|down_6|NC_012520.1_181616_181778_-	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|430aa|down_7|NC_012520.1_181898_183188_-	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|126aa|down_8|NC_012520.1_183918_184296_-	pfam04505, CD225, Interferon-induced transmembrane protein	NA|299aa|down_9|NC_012520.1_184778_185675_+	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
