assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000010765.1_ASM1076v1	NC_013364	Escherichia coli O111:H- str. 11128, complete genome	1	3445983-3446255	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	TypeI-E	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	NA,NA	NA|254aa|up_9|NC_013364.1_3437795_3438557_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NC_013364.1_3438537_3439587_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NC_013364.1_3439583_3440063_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NC_013364.1_3440062_3440773_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NC_013364.1_3440791_3441103_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NC_013364.1_3441296_3441620_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NC_013364.1_3441669_3442275_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NC_013364.1_3442274_3443702_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NC_013364.1_3443703_3444612_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NC_013364.1_3444863_3445901_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NC_013364.1_3446351_3446645_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NC_013364.1_3446644_3447565_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NC_013364.1_3447561_3448212_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NC_013364.1_3448193_3448940_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NC_013364.1_3448950_3450006_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NC_013364.1_3450017_3450557_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NC_013364.1_3450553_3452116_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NC_013364.1_3452213_3454913_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NC_013364.1_3455106_3455259_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NC_013364.1_3455523_3456258_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000010765.1_ASM1076v1	NC_013364	Escherichia coli O111:H- str. 11128, complete genome	2	3471957-3472351	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAAC,CGGTTTATCCCCGCTGGCGCGGGGAACA	29,27,28	0	0	NA	NA	I-E:I-E:I-E	6,6,5	6	Unclear	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	NA,NA|47aa|down_1|NC_013364.1_3473500_3473641_+	NA|424aa|up_9|NC_013364.1_3460601_3461873_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NC_013364.1_3461863_3462124_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NC_013364.1_3462140_3462716_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NC_013364.1_3462863_3463724_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NC_013364.1_3463720_3464500_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NC_013364.1_3464477_3465887_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NC_013364.1_3465908_3467363_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NC_013364.1_3467432_3468218_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NC_013364.1_3468536_3469814_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NC_013364.1_3469839_3471318_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NC_013364.1_3472690_3473362_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NC_013364.1_3473500_3473641_+	NA	NA|291aa|down_2|NC_013364.1_3473654_3474527_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NC_013364.1_3474586_3475885_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NC_013364.1_3475972_3477610_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NC_013364.1_3477837_3478629_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NC_013364.1_3478699_3479035_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NC_013364.1_3479034_3479283_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NC_013364.1_3479360_3481595_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|919aa|down_9|NC_013364.1_3482999_3485756_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_000010765.1_ASM1076v1	NC_013365	Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence	1	192066-192223	1	PILER-CR	no		csa3	Orphan	CCGTACCCGGTATAGTGGAT	20	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	NA|259aa|up_9|NC_013365.1_183174_183951_+,NA|114aa|up_8|NC_013365.1_184139_184481_+,NA|88aa|up_7|NC_013365.1_184581_184845_+,NA|235aa|up_6|NC_013365.1_185072_185777_+,NA|140aa|up_5|NC_013365.1_185809_186229_-,NA|172aa|down_0|NC_013365.1_192412_192928_-,NA|59aa|down_2|NC_013365.1_196480_196657_-,NA|386aa|down_4|NC_013365.1_198611_199769_-,NA|274aa|down_6|NC_013365.1_200967_201789_-,NA|67aa|down_8|NC_013365.1_202775_202976_-	NA|259aa|up_9|NC_013365.1_183174_183951_+	NA	NA|114aa|up_8|NC_013365.1_184139_184481_+	NA	NA|88aa|up_7|NC_013365.1_184581_184845_+	NA	NA|235aa|up_6|NC_013365.1_185072_185777_+	NA	NA|140aa|up_5|NC_013365.1_185809_186229_-	NA	NA|795aa|up_4|NC_013365.1_186316_188701_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|201aa|up_3|NC_013365.1_188951_189554_+	pfam13752, DUF4165, Domain of unknown function (DUF4165)	NA|79aa|up_2|NC_013365.1_189565_189802_+	pfam12245, Big_3_2, Bacterial Ig-like domain (group 3)	NA|199aa|up_1|NC_013365.1_189957_190554_+	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|294aa|up_0|NC_013365.1_190945_191827_+	pfam16441, DUF5038, Domain of unknown function (DUF5038)	NA|172aa|down_0|NC_013365.1_192412_192928_-	NA	NA|819aa|down_1|NC_013365.1_193578_196035_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|59aa|down_2|NC_013365.1_196480_196657_-	NA	NA|559aa|down_3|NC_013365.1_196671_198348_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|386aa|down_4|NC_013365.1_198611_199769_-	NA	NA|275aa|down_5|NC_013365.1_200128_200953_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|274aa|down_6|NC_013365.1_200967_201789_-	NA	NA|236aa|down_7|NC_013365.1_202071_202779_-	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40	NA|67aa|down_8|NC_013365.1_202775_202976_-	NA	NA|359aa|down_9|NC_013365.1_202993_204070_-	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein
GCF_000010765.1_ASM1076v1	NC_013370	Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence	1	54558-54665	1	PILER-CR	no			Orphan	ACAGTCAACATAAAATCGCGTACAGTCAATGTT	33	1	1	54634-54646	NC_013366.1_62565-62553	NA	2	2	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	NA|82aa|up_9|NC_013370.1_43869_44115_+,NA|170aa|up_7|NC_013370.1_44568_45078_-,NA|194aa|up_6|NC_013370.1_45089_45671_-,NA|272aa|up_5|NC_013370.1_45706_46522_-,NA|530aa|up_4|NC_013370.1_46531_48121_-,NA|569aa|up_3|NC_013370.1_48181_49888_-,NA|295aa|up_0|NC_013370.1_53597_54482_-,NA|131aa|down_0|NC_013370.1_54815_55208_-,NA|47aa|down_1|NC_013370.1_55219_55360_-,NA|141aa|down_2|NC_013370.1_55385_55808_-,NA|263aa|down_3|NC_013370.1_55847_56636_-,NA|95aa|down_4|NC_013370.1_57098_57383_+,NA|86aa|down_7|NC_013370.1_61377_61635_-	NA|82aa|up_9|NC_013370.1_43869_44115_+	NA	NA|52aa|up_8|NC_013370.1_44296_44452_+	pfam01848, HOK_GEF, Hok/gef family	NA|170aa|up_7|NC_013370.1_44568_45078_-	NA	NA|194aa|up_6|NC_013370.1_45089_45671_-	NA	NA|272aa|up_5|NC_013370.1_45706_46522_-	NA	NA|530aa|up_4|NC_013370.1_46531_48121_-	NA	NA|569aa|up_3|NC_013370.1_48181_49888_-	NA	NA|334aa|up_2|NC_013370.1_50112_51114_-	pfam08775, ParB, ParB family	NA|399aa|up_1|NC_013370.1_51130_52327_-	pfam18607, HTH_54, ParA helix turn helix domain	NA|295aa|up_0|NC_013370.1_53597_54482_-	NA	NA|131aa|down_0|NC_013370.1_54815_55208_-	NA	NA|47aa|down_1|NC_013370.1_55219_55360_-	NA	NA|141aa|down_2|NC_013370.1_55385_55808_-	NA	NA|263aa|down_3|NC_013370.1_55847_56636_-	NA	NA|95aa|down_4|NC_013370.1_57098_57383_+	NA	NA|302aa|down_5|NC_013370.1_57375_58281_+	PRK00321, rdgC, recombination associated protein; Reviewed	NA|1014aa|down_6|NC_013370.1_58277_61319_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|86aa|down_7|NC_013370.1_61377_61635_-	NA	NA|276aa|down_8|NC_013370.1_63328_64156_+	pfam01145, Band_7, SPFH domain / Band 7 family	NA|455aa|down_9|NC_013370.1_64539_65904_+	PRK08006, PRK08006, replicative DNA helicase DnaB
