assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000010705.1_ASM1070v1	NC_012891	Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1, complete sequence	1	828821-828928	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csm6,csa3,csn2,cas2,cas1,cas9	Orphan	AGACGAGGAGCCTGCTCAAGAGGA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csm6,csa3,csn2,cas2,cas1,cas9	NA,NA|57aa|down_6|NC_012891.1_836335_836506_+,NA|248aa|down_9|NC_012891.1_838601_839345_+	NA|223aa|up_9|NC_012891.1_811120_811789_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|411aa|up_8|NC_012891.1_811797_813030_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|574aa|up_7|NC_012891.1_814616_816338_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|581aa|up_6|NC_012891.1_816339_818082_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|293aa|up_5|NC_012891.1_818286_819165_+	COG1577, ERG12, Mevalonate kinase [Lipid metabolism]	NA|315aa|up_4|NC_012891.1_819146_820091_+	TIGR01240, Diphosphomevalonate_decarboxylase, diphosphomevalonate decarboxylase	NA|338aa|up_3|NC_012891.1_820083_821097_+	COG1577, ERG12, Mevalonate kinase [Lipid metabolism]	NA|331aa|up_2|NC_012891.1_821083_822076_+	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|440aa|up_1|NC_012891.1_824059_825379_+	pfam17961, Big_8, Bacterial Ig domain	NA|341aa|up_0|NC_012891.1_825454_826477_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|506aa|down_0|NC_012891.1_829359_830877_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|426aa|down_1|NC_012891.1_831064_832342_-	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|394aa|down_2|NC_012891.1_832322_833504_-	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|341aa|down_3|NC_012891.1_833691_834714_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|280aa|down_4|NC_012891.1_834898_835738_+	PRK01827, thyA, thymidylate synthase; Reviewed	NA|166aa|down_5|NC_012891.1_835818_836316_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|57aa|down_6|NC_012891.1_836335_836506_+	NA	NA|410aa|down_7|NC_012891.1_836619_837849_+	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|200aa|down_8|NC_012891.1_837858_838458_+	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|248aa|down_9|NC_012891.1_838601_839345_+	NA
GCF_000010705.1_ASM1070v1	NC_012891	Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1, complete sequence	2	1173568-1174793	2,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	csa3,csn2,cas2,cas1,cas9	cas3,DEDDh,DinG,csm6,csa3,csn2,cas2,cas1,cas9	Type II-A,Type II-C,Type II-B	GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	36,36,36,36	2	2	1174000-1174031|1174662-1174691	NC_012891.1_1596390-1596359|NC_012891.1_1751225-1751196	II-A,II-B:II-A,II-B:II-A,II-B:II-A,II-B	18,18,11,11	18	TypeII-A,TypeII-C,TypeII-B	cas3,DEDDh,DinG,csm6,csa3,csn2,cas2,cas1,cas9	NA,NA|214aa|down_8|NC_012891.1_1184692_1185334_-	NA|164aa|up_9|NC_012891.1_1165450_1165942_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_8|NC_012891.1_1165960_1166386_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_7|NC_012891.1_1166592_1167612_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|390aa|up_6|NC_012891.1_1167722_1168892_-	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|99aa|up_5|NC_012891.1_1169081_1169378_-	pfam08951, EntA_Immun, Enterocin A Immunity	NA|77aa|up_4|NC_012891.1_1169377_1169608_-	pfam01721, Bacteriocin_II, Class II bacteriocin	NA|217aa|up_3|NC_012891.1_1169815_1170466_-	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|146aa|up_2|NC_012891.1_1170478_1170916_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|611aa|up_1|NC_012891.1_1171091_1172924_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|153aa|up_0|NC_012891.1_1172993_1173452_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	csn2|221aa|down_0|NC_012891.1_1174895_1175558_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NC_012891.1_1175547_1175889_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NC_012891.1_1175885_1176755_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1372aa|down_3|NC_012891.1_1176754_1180870_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|210aa|down_4|NC_012891.1_1181345_1181975_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|NC_012891.1_1181974_1182739_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|NC_012891.1_1182738_1183491_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|NC_012891.1_1183500_1184631_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|NC_012891.1_1184692_1185334_-	NA	NA|452aa|down_9|NC_012891.1_1185457_1186813_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_000010705.1_ASM1070v1	NC_012891	Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1, complete sequence	3	1601511-1601673	3	PILER-CR	no	cas3	cas3,DEDDh,DinG,csm6,csa3,csn2,cas2,cas1,cas9	Unclear	TTCAAATATGATTTTTCGTATATTAATATATAGTAAA	37	0	0	NA	NA	NA	2	2	Unclear	cas3,DEDDh,DinG,csm6,csa3,csn2,cas2,cas1,cas9	NA|85aa|up_7|NC_012891.1_1598235_1598490_-,NA|117aa|up_6|NC_012891.1_1598476_1598827_-,NA|69aa|up_3|NC_012891.1_1600549_1600756_-,NA|47aa|up_2|NC_012891.1_1600736_1600877_-,NA|229aa|down_2|NC_012891.1_1602408_1603095_+	NA|225aa|up_9|NC_012891.1_1597057_1597732_-	pfam04404, ERF, ERF superfamily	NA|161aa|up_8|NC_012891.1_1597732_1598215_-	pfam05565, Sipho_Gp157, Siphovirus Gp157	NA|85aa|up_7|NC_012891.1_1598235_1598490_-	NA	NA|117aa|up_6|NC_012891.1_1598476_1598827_-	NA	NA|261aa|up_5|NC_012891.1_1598964_1599747_-	PRK08116, PRK08116, hypothetical protein; Validated	NA|272aa|up_4|NC_012891.1_1599733_1600549_-	TIGR01714, hypothetical_phage_protein, phage replisome organizer, putative, N-terminal region	NA|69aa|up_3|NC_012891.1_1600549_1600756_-	NA	NA|47aa|up_2|NC_012891.1_1600736_1600877_-	NA	NA|84aa|up_1|NC_012891.1_1600907_1601159_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|71aa|up_0|NC_012891.1_1601288_1601501_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|down_0|NC_012891.1_1601697_1602039_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|126aa|down_1|NC_012891.1_1602022_1602400_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|229aa|down_2|NC_012891.1_1602408_1603095_+	NA	NA|389aa|down_3|NC_012891.1_1603267_1604434_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|259aa|down_4|NC_012891.1_1604581_1605358_+	PRK14135, recX, recombination regulator RecX; Provisional	NA|178aa|down_5|NC_012891.1_1605439_1605973_+	PRK13662, PRK13662, hypothetical protein; Provisional	NA|104aa|down_6|NC_012891.1_1606026_1606338_+	pfam06124, DUF960, Staphylococcal protein of unknown function (DUF960)	NA|183aa|down_7|NC_012891.1_1613778_1614327_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|222aa|down_8|NC_012891.1_1614406_1615072_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	cas3|442aa|down_9|NC_012891.1_1615043_1616369_-	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
GCF_000010705.1_ASM1070v1	NC_012891	Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1, complete sequence	4	2067331-2067427	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csm6,csa3,csn2,cas2,cas1,cas9	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csm6,csa3,csn2,cas2,cas1,cas9	NA|58aa|up_9|NC_012891.1_2062500_2062674_-,NA|538aa|up_8|NC_012891.1_2062960_2064574_-,NA|174aa|up_7|NC_012891.1_2064563_2065085_-,NA|123aa|up_6|NC_012891.1_2065094_2065463_-,NA|66aa|up_5|NC_012891.1_2065371_2065569_-,NA|47aa|up_4|NC_012891.1_2065549_2065690_-,NA|111aa|up_3|NC_012891.1_2065686_2066019_-,NA|81aa|up_2|NC_012891.1_2066242_2066485_-,NA|175aa|down_1|NC_012891.1_2068237_2068762_+	NA|58aa|up_9|NC_012891.1_2062500_2062674_-	NA	NA|538aa|up_8|NC_012891.1_2062960_2064574_-	NA	NA|174aa|up_7|NC_012891.1_2064563_2065085_-	NA	NA|123aa|up_6|NC_012891.1_2065094_2065463_-	NA	NA|66aa|up_5|NC_012891.1_2065371_2065569_-	NA	NA|47aa|up_4|NC_012891.1_2065549_2065690_-	NA	NA|111aa|up_3|NC_012891.1_2065686_2066019_-	NA	NA|81aa|up_2|NC_012891.1_2066242_2066485_-	NA	NA|188aa|up_1|NC_012891.1_2066547_2067111_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|NC_012891.1_2067126_2067315_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|NC_012891.1_2067483_2067927_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|175aa|down_1|NC_012891.1_2068237_2068762_+	NA	NA|388aa|down_2|NC_012891.1_2069005_2070169_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_3|NC_012891.1_2070325_2070937_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|156aa|down_4|NC_012891.1_2071125_2071593_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|91aa|down_5|NC_012891.1_2071745_2072018_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|454aa|down_6|NC_012891.1_2072033_2073395_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_7|NC_012891.1_2073430_2073883_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_8|NC_012891.1_2073879_2075856_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_9|NC_012891.1_2075946_2077845_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
