assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000010685.1_ASM1068v1	NC_012207	Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172, complete genome	1	332008-332805	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|398aa|up_9|NC_012207.1_321701_322895_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NC_012207.1_322930_324613_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NC_012207.1_324629_326825_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NC_012207.1_326938_328072_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NC_012207.1_328068_328689_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NC_012207.1_328785_329367_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NC_012207.1_329296_330022_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NC_012207.1_330111_331032_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NC_012207.1_331071_331500_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|86aa|up_0|NC_012207.1_331523_331781_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|900aa|down_0|NC_012207.1_334879_337579_-	pfam00934, PE, PE family	NA|835aa|down_1|NC_012207.1_337828_340333_-	pfam00934, PE, PE family	NA|537aa|down_2|NC_012207.1_340623_342234_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_3|NC_012207.1_342257_343166_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_4|NC_012207.1_343389_345285_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_5|NC_012207.1_345281_346898_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_6|NC_012207.1_346894_350887_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_7|NC_012207.1_350883_351192_+	pfam00934, PE, PE family	NA|514aa|down_8|NC_012207.1_351194_352736_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_9|NC_012207.1_352784_353078_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_000010685.1_ASM1068v1	NC_012207	Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172, complete genome	2	339364-339586	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|732aa|up_9|NC_012207.1_324629_326825_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_8|NC_012207.1_326938_328072_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_7|NC_012207.1_328068_328689_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_6|NC_012207.1_328785_329367_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_5|NC_012207.1_329296_330022_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_4|NC_012207.1_330111_331032_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_3|NC_012207.1_331071_331500_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|86aa|up_2|NC_012207.1_331523_331781_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|917aa|up_1|NC_012207.1_331865_334616_-	pfam00934, PE, PE family	NA|900aa|up_0|NC_012207.1_334879_337579_-	pfam00934, PE, PE family	NA|537aa|down_0|NC_012207.1_340623_342234_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NC_012207.1_342257_343166_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NC_012207.1_343389_345285_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NC_012207.1_345281_346898_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NC_012207.1_346894_350887_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NC_012207.1_350883_351192_+	pfam00934, PE, PE family	NA|514aa|down_6|NC_012207.1_351194_352736_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NC_012207.1_352784_353078_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NC_012207.1_353107_353398_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NC_012207.1_353408_354296_+	pfam14011, ESX-1_EspG, EspG family
GCF_000010685.1_ASM1068v1	NC_012207	Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172, complete genome	3	693271-693347	1	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NC_012207.1_679164_679572_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NC_012207.1_679631_680318_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NC_012207.1_680471_683105_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NC_012207.1_683127_685515_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NC_012207.1_685652_686375_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NC_012207.1_686371_687169_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NC_012207.1_687170_688058_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NC_012207.1_688063_689278_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NC_012207.1_689274_690306_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NC_012207.1_690302_691748_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NC_012207.1_694482_696033_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NC_012207.1_696084_696477_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NC_012207.1_696473_696731_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NC_012207.1_696913_698149_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NC_012207.1_698399_698813_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NC_012207.1_698809_699046_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NC_012207.1_699149_699656_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NC_012207.1_699769_700240_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NC_012207.1_700283_701045_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NC_012207.1_701101_701413_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000010685.1_ASM1068v1	NC_012207	Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172, complete genome	4	928759-929670	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGGGCCGGCGG	21	1	23	929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652|929626-929652	NC_012207.1_835329-835355|NC_012207.1_331980-331954|NC_012207.1_334994-334968|NC_012207.1_337940-337914|NC_012207.1_841580-841606|NC_012207.1_842858-842884|NC_012207.1_928492-928518|NC_012207.1_2396470-2396444|NC_012207.1_333216-333190|NC_012207.1_335945-335919|NC_012207.1_336284-336258|NC_012207.1_339059-339033|NC_012207.1_676371-676345|NC_012207.1_838701-838727|NC_012207.1_839799-839825|NC_012207.1_928393-928419|NC_012207.1_1216512-1216538|NC_012207.1_1653683-1653657|NC_012207.1_1842895-1842869|NC_012207.1_2044375-2044349|NC_012207.1_3787881-3787907|NC_012207.1_3918133-3918159|NC_012207.1_3918289-3918315	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NC_012207.1_933788_934340_-,NA|81aa|down_8|NC_012207.1_939815_940058_+	NA|685aa|up_9|NC_012207.1_916394_918449_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NC_012207.1_918614_919784_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NC_012207.1_919871_920888_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NC_012207.1_921049_921691_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NC_012207.1_921771_922827_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NC_012207.1_922878_923271_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NC_012207.1_923328_923751_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NC_012207.1_923712_924003_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NC_012207.1_924107_925013_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NC_012207.1_925031_925847_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NC_012207.1_930047_932696_-	pfam00934, PE, PE family	NA|215aa|down_1|NC_012207.1_933163_933808_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NC_012207.1_933788_934340_-	NA	NA|241aa|down_3|NC_012207.1_934420_935143_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NC_012207.1_935213_936242_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|261aa|down_5|NC_012207.1_936930_937713_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NC_012207.1_937799_938612_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NC_012207.1_938679_939540_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NC_012207.1_939815_940058_+	NA	NA|431aa|down_9|NC_012207.1_940334_941627_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_000010685.1_ASM1068v1	NC_012207	Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172, complete genome	5	1214587-1215443	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	80	1214970-1214991|1214970-1214991|1215015-1215030|1215153-1215174|1215153-1215174|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288|1215270-1215288	NC_012207.1_2917775-2917754|NC_012207.1_2917841-2917820|NC_012207.1_2071565-2071550|NC_012207.1_839163-839184|NC_012207.1_1220407-1220428|NC_012207.1_335381-335363|NC_012207.1_676035-676017|NC_012207.1_841412-841430|NC_012207.1_1220380-1220398|NC_012207.1_1220452-1220470|NC_012207.1_1628404-1628386|NC_012207.1_1631230-1631212|NC_012207.1_1634088-1634070|NC_012207.1_1634850-1634832|NC_012207.1_1974202-1974184|NC_012207.1_2044549-2044531|NC_012207.1_2045095-2045077|NC_012207.1_2758683-2758665|NC_012207.1_2762203-2762185|NC_012207.1_3910394-3910412|NC_012207.1_150233-150251|NC_012207.1_333372-333354|NC_012207.1_336488-336470|NC_012207.1_336941-336923|NC_012207.1_336992-336974|NC_012207.1_337001-336983|NC_012207.1_339272-339254|NC_012207.1_339659-339641|NC_012207.1_339688-339706|NC_012207.1_339782-339764|NC_012207.1_364358-364340|NC_012207.1_444573-444555|NC_012207.1_547917-547899|NC_012207.1_625226-625244|NC_012207.1_625448-625466|NC_012207.1_675201-675183|NC_012207.1_842360-842378|NC_012207.1_1093118-1093136|NC_012207.1_1093766-1093784|NC_012207.1_1097837-1097819|NC_012207.1_1215642-1215660|NC_012207.1_1216149-1216167|NC_012207.1_1216401-1216419|NC_012207.1_1216419-1216437|NC_012207.1_1220800-1220818|NC_012207.1_1488611-1488593|NC_012207.1_1616356-1616338|NC_012207.1_1616809-1616791|NC_012207.1_1633953-1633935|NC_012207.1_1633962-1633944|NC_012207.1_1634175-1634157|NC_012207.1_1634226-1634208|NC_012207.1_1842472-1842454|NC_012207.1_1843000-1842982|NC_012207.1_1973476-1973458|NC_012207.1_1984437-1984455|NC_012207.1_2071763-2071745|NC_012207.1_2279941-2279923|NC_012207.1_2331191-2331173|NC_012207.1_2392400-2392418|NC_012207.1_2396383-2396365|NC_012207.1_2539066-2539048|NC_012207.1_2651343-2651361|NC_012207.1_2752000-2751982|NC_012207.1_2752582-2752564|NC_012207.1_3001051-3001069|NC_012207.1_3001150-3001168|NC_012207.1_3691982-3692000|NC_012207.1_3723133-3723115|NC_012207.1_3723757-3723739|NC_012207.1_3724000-3723982|NC_012207.1_3724132-3724114|NC_012207.1_3726037-3726019|NC_012207.1_3786462-3786480|NC_012207.1_3786645-3786663|NC_012207.1_3907827-3907845|NC_012207.1_3909566-3909584|NC_012207.1_3910220-3910238|NC_012207.1_3918511-3918529|NC_012207.1_4007984-4007966	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NC_012207.1_1210019_1210286_+,NA|61aa|down_3|NC_012207.1_1217987_1218170_+	NA|465aa|up_9|NC_012207.1_1204353_1205748_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NC_012207.1_1205949_1206672_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NC_012207.1_1206703_1207870_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NC_012207.1_1207940_1208435_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NC_012207.1_1208620_1209055_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NC_012207.1_1209156_1210023_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NC_012207.1_1210019_1210286_+	NA	NA|674aa|up_2|NC_012207.1_1210272_1212294_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NC_012207.1_1212392_1213121_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NC_012207.1_1213231_1214020_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NC_012207.1_1216802_1217123_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NC_012207.1_1217275_1217710_+	pfam00934, PE, PE family	NA|55aa|down_2|NC_012207.1_1217811_1217976_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NC_012207.1_1217987_1218170_+	NA	NA|152aa|down_4|NC_012207.1_1218361_1218817_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|851aa|down_5|NC_012207.1_1219231_1221784_+	pfam00934, PE, PE family	NA|313aa|down_6|NC_012207.1_1222001_1222940_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_7|NC_012207.1_1223327_1224608_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_8|NC_012207.1_1224712_1225540_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|434aa|down_9|NC_012207.1_1225750_1227052_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]
GCF_000010685.1_ASM1068v1	NC_012207	Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172, complete genome	6	2071235-2071489	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2071316-2071333|2071316-2071333|2071406-2071423	NC_012207.1_402340-402323|NC_012207.1_608588-608571|NC_012207.1_3397351-3397334	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NC_012207.1_2070594_2070858_-,NA	NA|165aa|up_9|NC_012207.1_2056944_2057439_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NC_012207.1_2057786_2058464_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NC_012207.1_2058822_2061648_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NC_012207.1_2061874_2062735_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NC_012207.1_2062775_2063642_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NC_012207.1_2063646_2065533_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NC_012207.1_2065548_2067582_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NC_012207.1_2067701_2069927_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NC_012207.1_2070202_2070598_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NC_012207.1_2070594_2070858_-	NA	NA|350aa|down_0|NC_012207.1_2072625_2073675_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NC_012207.1_2073674_2075042_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_2|NC_012207.1_2075215_2076655_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|317aa|down_3|NC_012207.1_2078167_2079118_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_4|NC_012207.1_2079132_2079549_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_5|NC_012207.1_2079826_2080249_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_6|NC_012207.1_2080297_2080600_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_7|NC_012207.1_2080596_2080911_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_8|NC_012207.1_2080910_2082644_+	PRK13206, ureC, urease subunit alpha; Reviewed	NA|212aa|down_9|NC_012207.1_2082643_2083279_+	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]
GCF_000010685.1_ASM1068v1	NC_012207	Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172, complete genome	7	2152966-2153091	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	48	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NC_012207.1_2142941_2143349_-,NA|127aa|down_5|NC_012207.1_2160700_2161081_-	NA|216aa|up_9|NC_012207.1_2136255_2136903_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NC_012207.1_2136909_2139132_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NC_012207.1_2139169_2139613_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NC_012207.1_2139726_2140320_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NC_012207.1_2140402_2141008_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NC_012207.1_2141107_2142112_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NC_012207.1_2142211_2142964_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NC_012207.1_2142941_2143349_-	NA	NA|767aa|up_1|NC_012207.1_2143483_2145784_+	PLN02892, PLN02892, isocitrate lyase	NA|1836aa|up_0|NC_012207.1_2145953_2151461_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NC_012207.1_2155211_2155676_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NC_012207.1_2155773_2156637_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NC_012207.1_2156674_2157946_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NC_012207.1_2158217_2159333_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NC_012207.1_2159323_2160664_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NC_012207.1_2160700_2161081_-	NA	NA|621aa|down_6|NC_012207.1_2161237_2163100_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NC_012207.1_2163107_2163587_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NC_012207.1_2163823_2164597_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NC_012207.1_2164600_2165368_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000010685.1_ASM1068v1	NC_012207	Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172, complete genome	8	3065406-3066833	2,4,4,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-A,Type III-D,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A:II-B,III-A	13,18,19,13	19	TypeIII-B,TypeIII-A,TypeIII-D,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NC_012207.1_3058685_3058940_-,NA|135aa|up_7|NC_012207.1_3059087_3059492_+,NA|64aa|up_6|NC_012207.1_3059488_3059680_+,NA|86aa|up_4|NC_012207.1_3061266_3061524_+,NA|104aa|up_3|NC_012207.1_3061628_3061940_+,NA|203aa|up_2|NC_012207.1_3062359_3062968_+,NA	NA|92aa|up_9|NC_012207.1_3058234_3058510_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NC_012207.1_3058685_3058940_-	NA	NA|135aa|up_7|NC_012207.1_3059087_3059492_+	NA	NA|64aa|up_6|NC_012207.1_3059488_3059680_+	NA	NA|385aa|up_5|NC_012207.1_3059878_3061033_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NC_012207.1_3061266_3061524_+	NA	NA|104aa|up_3|NC_012207.1_3061628_3061940_+	NA	NA|203aa|up_2|NC_012207.1_3062359_3062968_+	NA	NA|470aa|up_1|NC_012207.1_3063038_3064448_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NC_012207.1_3064444_3065257_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NC_012207.1_3066859_3068121_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NC_012207.1_3070374_3070716_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NC_012207.1_3070716_3071733_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm5gr7|376aa|down_3|NC_012207.1_3072989_3074117_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NC_012207.1_3074113_3075022_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NC_012207.1_3075002_3075713_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NC_012207.1_3075722_3076097_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NC_012207.1_3076093_3078532_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NC_012207.1_3078528_3079251_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NC_012207.1_3079650_3080196_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000010685.1_ASM1068v1	NC_012207	Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172, complete genome	9	3068156-3070326	5,5,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-A,Type III-D,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGA	36,36,35	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	29,29,28	29	TypeIII-B,TypeIII-A,TypeIII-D,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NC_012207.1_3058685_3058940_-,NA|135aa|up_8|NC_012207.1_3059087_3059492_+,NA|64aa|up_7|NC_012207.1_3059488_3059680_+,NA|86aa|up_5|NC_012207.1_3061266_3061524_+,NA|104aa|up_4|NC_012207.1_3061628_3061940_+,NA|203aa|up_3|NC_012207.1_3062359_3062968_+,NA	NA|85aa|up_9|NC_012207.1_3058685_3058940_-	NA	NA|135aa|up_8|NC_012207.1_3059087_3059492_+	NA	NA|64aa|up_7|NC_012207.1_3059488_3059680_+	NA	NA|385aa|up_6|NC_012207.1_3059878_3061033_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NC_012207.1_3061266_3061524_+	NA	NA|104aa|up_4|NC_012207.1_3061628_3061940_+	NA	NA|203aa|up_3|NC_012207.1_3062359_3062968_+	NA	NA|470aa|up_2|NC_012207.1_3063038_3064448_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NC_012207.1_3064444_3065257_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NC_012207.1_3066859_3068121_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NC_012207.1_3070374_3070716_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NC_012207.1_3070716_3071733_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm5gr7|376aa|down_2|NC_012207.1_3072989_3074117_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_3|NC_012207.1_3074113_3075022_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_4|NC_012207.1_3075002_3075713_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_5|NC_012207.1_3075722_3076097_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_6|NC_012207.1_3076093_3078532_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_7|NC_012207.1_3078528_3079251_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_8|NC_012207.1_3079650_3080196_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_9|NC_012207.1_3080467_3081352_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]
GCF_000010685.1_ASM1068v1	NC_012207	Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172, complete genome	10	4064379-4064704	6	CRISPRCasFinder	no	cas3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Unclear	CGCCGGGCTGTTCGGCGACGGCGGC	25	1	36	4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425|4064404-4064425	NC_012207.1_971965-971944|NC_012207.1_1842573-1842552|NC_012207.1_2396841-2396820|NC_012207.1_3723132-3723111|NC_012207.1_3923671-3923692|NC_012207.1_335194-335173|NC_012207.1_335380-335359|NC_012207.1_336487-336466|NC_012207.1_336991-336970|NC_012207.1_339085-339064|NC_012207.1_673751-673730|NC_012207.1_675200-675179|NC_012207.1_841260-841281|NC_012207.1_930545-930524|NC_012207.1_971485-971464|NC_012207.1_1093119-1093140|NC_012207.1_1192079-1192058|NC_012207.1_1194281-1194260|NC_012207.1_1488610-1488589|NC_012207.1_1634849-1634828|NC_012207.1_1973622-1973601|NC_012207.1_1974852-1974831|NC_012207.1_1985227-1985248|NC_012207.1_2044902-2044881|NC_012207.1_2761178-2761157|NC_012207.1_3109534-3109555|NC_012207.1_3726036-3726015|NC_012207.1_3764561-3764582|NC_012207.1_3911982-3912003|NC_012207.1_3912306-3912327|NC_012207.1_3912903-3912924|NC_012207.1_3913527-3913548|NC_012207.1_3918578-3918599|NC_012207.1_3920672-3920693|NC_012207.1_4007884-4007863|NC_012207.1_4007983-4007962	NA	5	5	Unclear	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|193aa|up_6|NC_012207.1_4057881_4058460_-,NA|52aa|up_1|NC_012207.1_4063292_4063448_-,NA|100aa|down_1|NC_012207.1_4065363_4065663_-,NA|257aa|down_8|NC_012207.1_4071628_4072399_-	NA|402aa|up_9|NC_012207.1_4051787_4052993_-	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|550aa|up_8|NC_012207.1_4053078_4054728_+	cd07302, CHD, cyclase homology domain	NA|935aa|up_7|NC_012207.1_4054724_4057529_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|193aa|up_6|NC_012207.1_4057881_4058460_-	NA	NA|68aa|up_5|NC_012207.1_4058599_4058803_-	COG1278, CspC, Cold shock proteins [Transcription]	cas3|772aa|up_4|NC_012207.1_4059052_4061368_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|95aa|up_3|NC_012207.1_4061504_4061789_+	pfam00934, PE, PE family	NA|346aa|up_2|NC_012207.1_4062112_4063150_+	pfam18621, DUF5628, Family of unknown function (DUF5628)	NA|52aa|up_1|NC_012207.1_4063292_4063448_-	NA	NA|105aa|up_0|NC_012207.1_4063903_4064218_+	pfam00934, PE, PE family	NA|126aa|down_0|NC_012207.1_4065023_4065401_-	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|100aa|down_1|NC_012207.1_4065363_4065663_-	NA	NA|69aa|down_2|NC_012207.1_4065686_4065893_-	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|192aa|down_3|NC_012207.1_4065902_4066478_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|267aa|down_4|NC_012207.1_4066501_4067302_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|388aa|down_5|NC_012207.1_4067298_4068462_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|down_6|NC_012207.1_4068458_4069511_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|down_7|NC_012207.1_4070010_4070874_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|down_8|NC_012207.1_4071628_4072399_-	NA	NA|549aa|down_9|NC_012207.1_4072395_4074042_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
GCF_000010685.1_ASM1068v1	NC_012207	Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172, complete genome	11	4064781-4064859	7	CRISPRCasFinder	no	cas3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Unclear	CGCCGGGCTGTTCGGCGACGGCGGC	25	0	0	NA	NA	NA	1	1	Unclear	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|193aa|up_6|NC_012207.1_4057881_4058460_-,NA|52aa|up_1|NC_012207.1_4063292_4063448_-,NA|100aa|down_1|NC_012207.1_4065363_4065663_-,NA|257aa|down_8|NC_012207.1_4071628_4072399_-	NA|402aa|up_9|NC_012207.1_4051787_4052993_-	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|550aa|up_8|NC_012207.1_4053078_4054728_+	cd07302, CHD, cyclase homology domain	NA|935aa|up_7|NC_012207.1_4054724_4057529_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|193aa|up_6|NC_012207.1_4057881_4058460_-	NA	NA|68aa|up_5|NC_012207.1_4058599_4058803_-	COG1278, CspC, Cold shock proteins [Transcription]	cas3|772aa|up_4|NC_012207.1_4059052_4061368_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|95aa|up_3|NC_012207.1_4061504_4061789_+	pfam00934, PE, PE family	NA|346aa|up_2|NC_012207.1_4062112_4063150_+	pfam18621, DUF5628, Family of unknown function (DUF5628)	NA|52aa|up_1|NC_012207.1_4063292_4063448_-	NA	NA|105aa|up_0|NC_012207.1_4063903_4064218_+	pfam00934, PE, PE family	NA|126aa|down_0|NC_012207.1_4065023_4065401_-	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|100aa|down_1|NC_012207.1_4065363_4065663_-	NA	NA|69aa|down_2|NC_012207.1_4065686_4065893_-	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|192aa|down_3|NC_012207.1_4065902_4066478_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|267aa|down_4|NC_012207.1_4066501_4067302_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|388aa|down_5|NC_012207.1_4067298_4068462_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|down_6|NC_012207.1_4068458_4069511_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|down_7|NC_012207.1_4070010_4070874_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|down_8|NC_012207.1_4071628_4072399_-	NA	NA|549aa|down_9|NC_012207.1_4072395_4074042_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
GCF_000010685.1_ASM1068v1	NC_012207	Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172, complete genome	12	4081041-4081129	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_5|NC_012207.1_4071628_4072399_-,NA|233aa|up_0|NC_012207.1_4080145_4080844_-,NA|126aa|down_6|NC_012207.1_4086364_4086742_+	NA|267aa|up_9|NC_012207.1_4066501_4067302_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|388aa|up_8|NC_012207.1_4067298_4068462_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_7|NC_012207.1_4068458_4069511_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_6|NC_012207.1_4070010_4070874_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_5|NC_012207.1_4071628_4072399_-	NA	NA|549aa|up_4|NC_012207.1_4072395_4074042_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_3|NC_012207.1_4074038_4074902_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_2|NC_012207.1_4074894_4075821_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_1|NC_012207.1_4075822_4077448_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|233aa|up_0|NC_012207.1_4080145_4080844_-	NA	NA|173aa|down_0|NC_012207.1_4081189_4081708_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NC_012207.1_4081708_4082692_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NC_012207.1_4082684_4083878_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NC_012207.1_4083883_4084705_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NC_012207.1_4084836_4085520_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NC_012207.1_4085519_4086257_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NC_012207.1_4086364_4086742_+	NA	NA|225aa|down_7|NC_012207.1_4086840_4087515_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NC_012207.1_4087620_4088415_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NC_012207.1_4088421_4088877_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
