The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_013654	Escherichia coli SE15, complete genome	4717338	1137396	1190863	4717338	tail,lysis,portal,capsid,transposase,terminase,integrase,head,tRNA	Enterobacteria_phage(55.17%)	70	1130032:1130047	1194724:1194739
1130032:1130047	attL	TAGCTTTGGAAAACAG	NA	NA	NA	NA
WP_001295972.1|1137396_1138503_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000476093.1|1138556_1139018_-	phosphatase NudJ	NA	NA	NA	NA	NA
WP_001248677.1|1139027_1139681_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
WP_000444487.1|1139852_1141103_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	100.0	3.8e-23
WP_000741335.1|1141216_1142359_-|integrase	phage integrase Arm DNA-binding domain-containing protein	integrase	Q77Z02	Phage_21	100.0	3.6e-206
WP_000088653.1|1142348_1142585_-	excisionase	NA	NA	NA	NA	NA
WP_000488406.1|1142724_1142964_-	DUF4222 domain-containing protein	NA	M1FPC8	Enterobacteria_phage	94.9	3.9e-38
WP_000763364.1|1143011_1143230_-	TraR/DksA family transcriptional regulator	NA	M1FQT7	Enterobacteria_phage	95.8	1.8e-34
WP_001308571.1|1143328_1143610_-	hypothetical protein	NA	A0A0P0ZE02	Stx2-converting_phage	97.8	1.2e-46
WP_000548537.1|1143620_1143812_-	DUF1382 family protein	NA	A0A0P0ZC67	Stx2-converting_phage	98.4	2.1e-26
WP_000149539.1|1143784_1143967_-	DUF1317 domain-containing protein	NA	A0A0N7CHV0	Escherichia_phage	96.7	6.3e-28
WP_000186858.1|1143963_1144644_-	YqaJ viral recombinase family protein	NA	A0A0P0ZCD4	Stx2-converting_phage	99.6	4.6e-132
WP_000100847.1|1144640_1145426_-	phage recombination protein Bet	NA	A0A1I9LJN0	Stx_converting_phage	100.0	6.3e-149
WP_000995417.1|1145431_1145728_-	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	96.9	1.5e-47
WP_000233576.1|1145803_1146010_-	phage encoded cell division inhibitor protein	NA	K7P6H3	Enterobacteria_phage	85.3	3.2e-28
WP_000866321.1|1146485_1146863_-	ASCH domain-containing protein	NA	Q6SE87	Lactobacillus_prophage	49.2	1.3e-30
WP_000380252.1|1146840_1147902_-	hypothetical protein	NA	Q6SE88	Lactobacillus_prophage	42.0	2.9e-64
WP_000712396.1|1147982_1148675_-	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	85.3	2.5e-109
WP_000184665.1|1148785_1149013_+	helix-turn-helix domain-containing protein	NA	Q76H55	Enterobacteria_phage	69.0	3.8e-22
WP_001182881.1|1149043_1149583_+	hypothetical protein	NA	M9NZI6	Enterobacteria_phage	66.7	8.9e-62
WP_000147914.1|1149579_1150599_+	replication protein	NA	A0A0M5M7Y1	Salmonella_phage	64.7	2.7e-112
WP_000788877.1|1150595_1151297_+	Replication protein 14	NA	K7P6G2	Enterobacteria_phage	100.0	9.9e-130
WP_000145918.1|1151293_1151596_+	protein ren	NA	A0A0N6WES4	Escherichia_phage	93.5	1.3e-41
WP_001070442.1|1151663_1151996_+	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA	NA
WP_032143398.1|1152044_1152194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000709098.1|1152251_1153778_+	recombinase family protein	NA	Q3HQV4	Burkholderia_phage	30.8	2.7e-31
WP_000700204.1|1154127_1155171_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_072093903.1|1155520_1155622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001053004.1|1155618_1156074_+	DNA base-flipping protein YbcN	NA	I6PD71	Cronobacter_phage	66.9	1.2e-59
WP_000224907.1|1156073_1156244_+	hypothetical protein	NA	K7P7K0	Enterobacteria_phage	67.9	5.3e-13
WP_000774475.1|1156236_1156527_+	DUF1364 domain-containing protein	NA	K7PGZ6	Enterobacteria_phage	93.8	1.3e-46
WP_001099697.1|1156523_1156886_+	crossover junction endodeoxyribonuclease RusA	NA	K7PM48	Enterobacteria_phage	95.7	7.3e-60
WP_000971095.1|1156882_1157023_+	YlcG family protein	NA	K7PHH3	Enterobacteria_phage	72.1	1.7e-09
WP_001204794.1|1157108_1157492_+	antitermination protein QuuD	NA	A0A088CD47	Shigella_phage	82.5	2.0e-55
WP_000737277.1|1157680_1158763_-	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	79.0	4.1e-167
WP_000839596.1|1159352_1159568_+|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
WP_000075094.1|1159567_1160065_+	lysozyme RrrD	NA	A5LH83	Enterobacteria_phage	99.4	1.7e-91
WP_001441931.1|1160061_1160505_+|lysis	lysis protein	lysis	M1FJ79	Enterobacteria_phage	92.5	4.3e-70
WP_000084844.1|1160543_1160918_+	hypothetical protein	NA	M1FPD9	Enterobacteria_phage	80.6	1.5e-47
WP_012896773.1|1161149_1161428_+	hypothetical protein	NA	K7PJR7	Enterobacteria_phage	87.5	1.3e-08
WP_000867568.1|1161509_1162058_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	84.2	1.0e-57
WP_001573719.1|1162029_1163958_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	66.9	1.1e-260
WP_000258997.1|1163941_1164148_+|head	phage head-stabilizing protein	head	K7PM10	Enterobacteria_phage	55.4	3.0e-10
WP_001441934.1|1164144_1165737_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	60.9	4.2e-184
WP_001253893.1|1165726_1167232_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	53.5	7.9e-100
WP_000256813.1|1167268_1167616_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	58.1	2.6e-22
WP_000522650.1|1167673_1168702_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.6	4.5e-115
WP_000201530.1|1168753_1169128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001204540.1|1169120_1169474_+|tail	tail attachment protein	tail	A0A0K2FJB7	Enterobacteria_phage	65.0	3.4e-38
WP_001007370.1|1169485_1170064_+|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	91.7	1.1e-78
WP_000683150.1|1170060_1170456_+|tail	tail protein	tail	A0A2R9YJI2	Escherichia_phage	98.5	2.9e-70
WP_001545921.1|1170463_1171204_+|tail	phage tail protein	tail	A0A2I6TC77	Escherichia_phage	98.0	2.8e-130
WP_000479204.1|1171219_1171642_+|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	97.9	3.7e-71
WP_000459449.1|1171623_1172058_+|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	98.3	3.8e-63
WP_000840282.1|1172050_1174612_+|tail	phage tail tape measure protein	tail	A0A2R9YJM8	Escherichia_phage	88.8	0.0e+00
WP_000847387.1|1174608_1174938_+|tail	phage tail protein	tail	A0A2R9YJM0	Escherichia_phage	94.5	9.9e-56
WP_001152542.1|1174937_1175636_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	97.8	5.2e-131
WP_000194748.1|1175641_1176385_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	96.8	3.3e-147
WP_000090860.1|1176321_1176954_+|tail	tail assembly protein	tail	C6ZCZ4	Enterobacteria_phage	97.6	4.6e-94
WP_001298859.1|1177561_1179103_+|transposase	IS21-like element ISEc12 family transposase	transposase	K4I413	Acidithiobacillus_phage	46.4	1.7e-129
WP_001016257.1|1179117_1179864_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	31.6	3.5e-24
WP_001545960.1|1183057_1184986_+|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0E3M194	Enterobacteria_phage	60.1	7.5e-111
WP_000422741.1|1185067_1185493_+	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	99.0	1.5e-48
WP_000624722.1|1185489_1185840_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	66.4	4.7e-40
WP_000080195.1|1185870_1187484_+|transposase	IS66-like element ISEc23 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	63.6	3.0e-182
WP_000654168.1|1187651_1187930_+	hypothetical protein	NA	A0A0E3JSQ1	Enterobacteria_phage	57.6	7.6e-25
WP_000355360.1|1187942_1188236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000968127.1|1188327_1189185_-	iron/manganese ABC transporter permease subunit SitD	NA	NA	NA	NA	NA
WP_001101733.1|1189181_1190039_-	iron/manganese ABC transporter permease subunit SitC	NA	NA	NA	NA	NA
WP_000983701.1|1190035_1190863_-	iron/manganese ABC transporter ATP-binding protein SitB	NA	M1HV27	Acanthocystis_turfacea_Chlorella_virus	27.7	8.7e-08
1194724:1194739	attR	TAGCTTTGGAAAACAG	NA	NA	NA	NA
>prophage 2
NC_013654	Escherichia coli SE15, complete genome	4717338	2056139	2064810	4717338		Escherichia_phage(28.57%)	8	NA	NA
WP_000272486.1|2056139_2057243_-	UDP-galactopyranose mutase	NA	E4ZFQ1	Streptococcus_phage	59.5	1.0e-133
WP_001393538.1|2057250_2058498_-	O16 family O-antigen flippase	NA	NA	NA	NA	NA
WP_001100981.1|2058494_2059052_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	57.5	7.8e-53
WP_000783975.1|2059051_2059933_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	63.8	1.9e-106
WP_001023617.1|2059990_2060890_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.5	6.3e-28
WP_000699450.1|2060889_2061975_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	3.9e-101
WP_000183060.1|2062347_2063241_-	UTP--glucose-1-phosphate uridylyltransferase GalF	NA	A0A127AW70	Bacillus_phage	42.0	1.0e-46
WP_001115960.1|2063415_2064810_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	31.9	6.3e-19
>prophage 3
NC_013654	Escherichia coli SE15, complete genome	4717338	2160848	2169160	4717338		Enterobacteria_phage(83.33%)	9	NA	NA
WP_001296230.1|2160848_2162852_+	SWIM zinc finger family protein	NA	Q9EYF6	Enterobacteria_phage	95.7	0.0e+00
WP_001296231.1|2162976_2163438_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	99.3	3.2e-76
WP_001295430.1|2163478_2163949_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
WP_000598641.1|2163995_2164715_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_001295431.1|2164711_2166397_-	two-component regulatory system sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
WP_001240408.1|2166618_2167350_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	98.5	6.3e-111
WP_001216963.1|2167409_2167517_+	protein YohO	NA	NA	NA	NA	NA
WP_000783109.1|2167497_2168229_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA	NA
WP_000569347.1|2168233_2169160_-	glycine betaine ABC transporter ATP binding protein YehX	NA	F2Y1V5	Organic_Lake_phycodnavirus	26.8	2.6e-08
>prophage 4
NC_013654	Escherichia coli SE15, complete genome	4717338	2748332	2755472	4717338		Escherichia_phage(83.33%)	6	NA	NA
WP_000103863.1|2748332_2750894_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.8	1.6e-31
WP_001141293.1|2750999_2751656_+	protein-serine/threonine phosphatase	NA	A0A077SLQ6	Escherichia_phage	46.1	3.3e-50
WP_001296319.1|2751706_2752474_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	57.4	9.7e-70
WP_000847996.1|2752669_2753578_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.2	1.9e-117
WP_000590411.1|2753574_2754837_+	3-oxo-tetronate kinase	NA	A0A077SLJ7	Escherichia_phage	61.4	2.2e-135
WP_001279004.1|2754833_2755472_+	aldolase	NA	A0A077SK32	Escherichia_phage	74.5	1.4e-82
>prophage 1
NC_013655	Escherichia coli SE15 plasmid pECSF1, complete sequence	122345	33297	81061	122345	transposase	Stx2-converting_phage(23.08%)	40	NA	NA
WP_000080195.1|33297_34911_+|transposase	IS66-like element ISEc23 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	63.6	3.0e-182
WP_000948349.1|36966_42237_+	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA	NA
WP_000205725.1|42256_43003_+	conjugal transfer pilus acetylase TraX	NA	A0A077JBM8	Xanthomonas_phage	30.8	2.4e-09
WP_000704523.1|43061_43922_+	alpha/beta hydrolase	NA	A2RQC8	Archaeal_BJ1_virus	23.5	1.9e-10
WP_000139321.1|44024_44585_+	fertility inhibition protein FinO	NA	NA	NA	NA	NA
WP_001309245.1|44713_44926_+	ANR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001233838.1|45170_45632_+	thermonuclease family protein	NA	A0A0R6PHV6	Moraxella_phage	37.1	4.2e-20
WP_001298565.1|45677_45887_+	hemolysin expression modulator Hha	NA	NA	NA	NA	NA
WP_000766808.1|45924_46515_+	DUF2726 domain-containing protein	NA	NA	NA	NA	NA
WP_001016257.1|46722_47469_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	48.5	5.0e-55
WP_001298859.1|47483_49025_-|transposase	IS21-like element ISEc12 family transposase	transposase	K4I413	Acidithiobacillus_phage	46.4	1.7e-129
WP_000080195.1|49268_50882_-|transposase	IS66-like element ISEc23 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	63.6	3.0e-182
WP_000624722.1|50912_51263_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	66.4	4.7e-40
WP_000422741.1|51259_51685_-	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	99.0	1.5e-48
WP_000078109.1|51880_52141_+	replication regulatory protein RepA	NA	NA	NA	NA	NA
WP_001365705.1|52373_52448_+	RepA leader peptide Tap	NA	NA	NA	NA	NA
WP_000131004.1|52440_53298_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA	NA
WP_001067837.1|54353_55058_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.1	5.8e-138
WP_077459403.1|55087_55315_+	DsbA family protein	NA	NA	NA	NA	NA
WP_000949451.1|55304_55811_+	protein disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_012372823.1|55993_56809_+	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA	NA
WP_001332815.1|57155_59042_+	FTR1 family iron permease	NA	NA	NA	NA	NA
WP_000178050.1|59082_59610_+	iron transporter	NA	NA	NA	NA	NA
WP_000119836.1|59713_61093_+	DUF2318 domain-containing protein	NA	NA	NA	NA	NA
WP_000964653.1|61095_62379_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000729218.1|62368_63499_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000117262.1|63503_64199_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	7.5e-29
WP_001267176.1|64185_64671_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_000874189.1|64695_65181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001189106.1|66085_66574_-|transposase	transposase	transposase	A0A077SK28	Escherichia_phage	93.2	6.7e-24
WP_000371882.1|68087_68348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000194542.1|68344_68854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000142452.1|68873_69221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001080732.1|69349_69685_+	colicin transporter	NA	NA	NA	NA	NA
WP_001224623.1|72154_73030_+	ChaN family lipoprotein	NA	NA	NA	NA	NA
WP_000981091.1|73037_73814_+	energy transducer TonB	NA	NA	NA	NA	NA
WP_001100763.1|73982_76244_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_001020413.1|76312_77488_+	enterotoxin production-related protein TieB	NA	NA	NA	NA	NA
WP_000065240.1|78809_79565_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	33.9	3.2e-33
WP_000143800.1|79561_81061_-|transposase	IS21-like element ISEc10 family transposase	transposase	NA	NA	NA	NA
