The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_009641	Staphylococcus aureus subsp. aureus str. Newman, complete genome	2878897	320845	363190	2878897	capsid,integrase,terminase,portal,holin,head,tail,plate	Staphylococcus_phage(94.03%)	67	320735:320752	363924:363941
320735:320752	attL	ATCATACAAGGATGGGAT	NA	NA	NA	NA
WP_000264186.1|320845_322051_-|integrase	site-specific integrase	integrase	Q4ZBP1	Staphylococcus_phage	100.0	8.5e-222
WP_000337827.1|322161_322341_+	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_000392183.1|322320_323253_-	hypothetical protein	NA	A0EX19	Staphylococcus_virus	100.0	6.7e-174
WP_000525007.1|323284_323749_-	hypothetical protein	NA	A0A0N9BAX8	Staphylococcus_phage	100.0	8.4e-85
WP_000333630.1|323761_324076_-	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_001121116.1|324227_324464_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAY2	Staphylococcus_phage	100.0	1.5e-37
WP_000438352.1|324477_324657_+	hypothetical protein	NA	A0A0N9BAV3	Staphylococcus_phage	100.0	1.7e-25
WP_000394410.1|324757_325240_-	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
WP_001148586.1|325299_326049_+	phage antirepressor KilAC domain-containing protein	NA	A0A0N7E0R7	Staphylococcus_phage	100.0	1.2e-136
WP_000993180.1|326064_326283_+	hypothetical protein	NA	Q4ZBN1	Staphylococcus_phage	100.0	1.1e-31
WP_001124198.1|326312_326576_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_000066021.1|326587_326749_+	DUF1270 family protein	NA	Q4ZBM9	Staphylococcus_phage	100.0	3.8e-21
WP_000291089.1|326840_327101_+	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.2e-43
WP_000815401.1|327110_327332_+	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000134097.1|327324_328113_+	ATP-binding protein	NA	Q4ZBM5	Staphylococcus_phage	100.0	2.6e-142
WP_000704705.1|328141_328693_+	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
WP_001199439.1|328705_329377_+	hypothetical protein	NA	A7TWM9	Staphylococcus_phage	100.0	2.0e-127
WP_000371250.1|329482_330340_-	DUF4393 domain-containing protein	NA	Q4ZBL8	Staphylococcus_phage	100.0	9.5e-159
WP_000190223.1|330404_331175_+	conserved phage C-terminal domain-containing protein	NA	A0A0N6WMQ8	Staphylococcus_phage	100.0	1.8e-116
WP_000803062.1|331184_331964_+	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000256597.1|331957_332116_+	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	100.0	3.4e-22
WP_001123684.1|332128_332350_+	DUF3269 family protein	NA	Q4ZBL4	Staphylococcus_phage	100.0	1.7e-35
WP_000401950.1|332359_332767_+	RusA family crossover junction endodeoxyribonuclease	NA	D2JGK8	Staphylococcus_phage	100.0	1.7e-73
WP_001187264.1|332766_332952_+	DUF3113 family protein	NA	D2JGK9	Staphylococcus_phage	100.0	7.0e-27
WP_000117792.1|332952_333312_+	hypothetical protein	NA	D2JGL0	Staphylococcus_phage	100.0	4.5e-62
WP_000022735.1|333311_333566_+	DUF3310 domain-containing protein	NA	D2JGL1	Staphylococcus_phage	100.0	1.3e-42
WP_012068339.1|333565_333814_+	hypothetical protein	NA	Q4ZBK9	Staphylococcus_phage	100.0	1.2e-42
WP_000695747.1|333828_334230_+	hypothetical protein	NA	A0EWR3	Staphylococcus_virus	100.0	5.4e-72
WP_000982708.1|334417_334867_+	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
WP_001105621.1|334863_335148_+	hypothetical protein	NA	E9LT36	Staphylococcus_phage	100.0	2.7e-46
WP_001065083.1|335140_335389_+	DUF1024 family protein	NA	A0A2K9VBU0	Staphylococcus_phage	100.0	3.1e-38
WP_000185669.1|335381_335918_+	dUTP diphosphatase	NA	R4IG63	Staphylococcus_phage	100.0	9.4e-96
WP_000195799.1|335954_336161_+	DUF1381 domain-containing protein	NA	A0A0N9BAZ6	Staphylococcus_phage	100.0	1.7e-21
WP_000132919.1|336157_336352_+	hypothetical protein	NA	A0A0N7E0T8	Staphylococcus_phage	100.0	3.5e-29
WP_001072795.1|336348_336552_+	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_000608279.1|336544_336781_+	hypothetical protein	NA	A0A0N7E0U3	Staphylococcus_phage	100.0	1.3e-36
WP_001580341.1|336770_337160_+	hypothetical protein	NA	A0A0N9BB01	Staphylococcus_phage	100.0	1.1e-64
WP_000595257.1|337156_337330_+	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
WP_000286968.1|337330_337732_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_000594088.1|338082_338577_+|terminase	terminase small subunit	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
WP_001037578.1|338569_339793_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
WP_000177430.1|339789_341214_+|portal	phage portal protein	portal	A0A0N9BB70	Staphylococcus_phage	100.0	4.8e-272
WP_000184135.1|341182_342136_+|head	phage head morphogenesis protein	head	A0A0N7E0U6	Staphylococcus_phage	100.0	2.3e-177
WP_000346033.1|342137_342344_+	hypothetical protein	NA	A0A0N9BB04	Staphylococcus_phage	100.0	3.2e-28
WP_001019219.1|342446_343031_+	DUF4355 domain-containing protein	NA	A0A0N7E0U8	Staphylococcus_phage	100.0	1.3e-77
WP_000235168.1|343047_343962_+|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_000002929.1|343973_344117_+	hypothetical protein	NA	A0A0N9BAZ7	Staphylococcus_phage	100.0	3.5e-18
WP_000177352.1|344122_344473_+	hypothetical protein	NA	A0A0N6WMR1	Staphylococcus_phage	100.0	4.1e-60
WP_000483040.1|344484_344820_+|head	phage head closure protein	head	Q4ZBR2	Staphylococcus_phage	100.0	8.8e-60
WP_001151330.1|344806_345220_+	HK97 gp10 family phage protein	NA	A0A0N9BAY5	Staphylococcus_phage	100.0	1.1e-75
WP_000270192.1|345232_345658_+	DUF3168 domain-containing protein	NA	Q4ZBQ9	Staphylococcus_phage	100.0	5.5e-75
WP_000057582.1|345658_346216_+|tail	tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
WP_000134337.1|346282_346789_+	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
WP_000880587.1|346833_347118_+	hypothetical protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
WP_000379457.1|347121_350265_+|terminase	terminase	terminase	Q4ZBQ5	Staphylococcus_phage	100.0	0.0e+00
WP_000560181.1|350279_351221_+|tail	phage tail family protein	tail	Q4ZBQ4	Staphylococcus_phage	100.0	5.2e-182
WP_001122001.1|351231_353118_+|tail	phage tail protein	tail	Q4ZBQ3	Staphylococcus_phage	100.0	0.0e+00
WP_000323259.1|353130_355029_+	hypothetical protein	NA	Q4ZBQ2	Staphylococcus_phage	100.0	0.0e+00
WP_000634521.1|355028_356852_+|plate	phage baseplate upper protein	plate	A0A0F6N3G2	Staphylococcus_phage	100.0	0.0e+00
WP_000705895.1|356851_357229_+	DUF2977 domain-containing protein	NA	A0EX77	Staphylococcus_virus	100.0	9.0e-61
WP_000782200.1|357232_357406_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466778.1|357445_357745_+	DUF2951 domain-containing protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
WP_000524021.1|357881_359780_+	glucosaminidase domain-containing protein	NA	A0EX80	Staphylococcus_virus	100.0	0.0e+00
WP_000276627.1|359792_360965_+|plate	BppU family phage baseplate upper protein	plate	A0A0N9BAZ1	Staphylococcus_phage	100.0	1.1e-197
WP_000398878.1|360970_361366_+	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
WP_000339146.1|361421_361724_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000930256.1|361735_363190_+	N-acetylmuramoyl-L-alanine amidase	NA	Q4ZBP3	Staphylococcus_phage	100.0	4.0e-290
363924:363941	attR	ATCATACAAGGATGGGAT	NA	NA	NA	NA
>prophage 2
NC_009641	Staphylococcus aureus subsp. aureus str. Newman, complete genome	2878897	756619	764439	2878897		Hokovirus(16.67%)	10	NA	NA
WP_000244421.1|756619_757675_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|757674_758361_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|758335_758809_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|759150_759591_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|759870_760455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|760553_761267_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|761270_761690_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|761691_762360_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|762710_763304_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|763287_764439_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 3
NC_009641	Staphylococcus aureus subsp. aureus str. Newman, complete genome	2878897	776411	791198	2878897		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|776411_777470_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|777820_778363_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|779042_779960_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|780050_780152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|780229_781735_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|782075_782576_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|782595_783462_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|784262_784661_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|784623_786729_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|786846_787818_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|788331_788487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|788525_789497_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|789483_790440_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|790436_791198_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 4
NC_009641	Staphylococcus aureus subsp. aureus str. Newman, complete genome	2878897	1036094	1044567	2878897		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1036094_1036577_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1036563_1037688_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1037691_1038396_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1038395_1038659_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1038660_1039332_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1039324_1041514_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1041492_1042977_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1042969_1043998_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1044000_1044567_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
NC_009641	Staphylococcus aureus subsp. aureus str. Newman, complete genome	2878897	1096160	1155196	2878897	capsid,terminase,portal,holin,tRNA,tail,head,plate	Staphylococcus_phage(52.31%)	79	NA	NA
WP_000401377.1|1096160_1096643_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_000843611.1|1096704_1097844_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000872158.1|1097970_1098528_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000290472.1|1098607_1098781_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_000861313.1|1098897_1100283_-	recombinase family protein	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
WP_000337826.1|1100391_1100571_+	hypothetical protein	NA	A0EWN7	Staphylococcus_virus	100.0	8.3e-25
WP_000392186.1|1100550_1101483_-	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	100.0	3.9e-174
WP_000358224.1|1101518_1102238_-	helix-turn-helix transcriptional regulator	NA	A0A2H4PQQ2	Staphylococcus_phage	100.0	1.3e-132
WP_001198673.1|1102379_1102598_+	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
WP_001148566.1|1102613_1103402_+	phage antirepressor KilAC domain-containing protein	NA	A0EWP1	Staphylococcus_virus	100.0	4.2e-145
WP_000390105.1|1103418_1103613_+	hypothetical protein	NA	E9LT75	Staphylococcus_phage	100.0	1.2e-29
WP_000395457.1|1103816_1104047_-	hypothetical protein	NA	R4IG40	Staphylococcus_phage	100.0	2.3e-35
WP_001285959.1|1104226_1104388_+	DUF1270 domain-containing protein	NA	A0EWP5	Staphylococcus_virus	100.0	1.5e-20
WP_000829610.1|1104477_1104795_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	3.9e-33
WP_000291474.1|1104799_1105060_+	DUF1108 family protein	NA	A0EWP7	Staphylococcus_virus	100.0	6.8e-44
WP_000002516.1|1105074_1105554_+	siphovirus Gp157 family protein	NA	A0A0H4J328	Staphylococcus_phage	100.0	1.1e-82
WP_001288247.1|1105553_1106327_+	AAA family ATPase	NA	A0EWP9	Staphylococcus_virus	100.0	1.6e-141
WP_000704705.1|1106356_1106908_+	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
WP_001199439.1|1106920_1107592_+	hypothetical protein	NA	A7TWM9	Staphylococcus_phage	100.0	2.0e-127
WP_000371250.1|1107697_1108555_-	DUF4393 domain-containing protein	NA	Q4ZBL8	Staphylococcus_phage	100.0	9.5e-159
WP_000190223.1|1108619_1109390_+	conserved phage C-terminal domain-containing protein	NA	A0A0N6WMQ8	Staphylococcus_phage	100.0	1.8e-116
WP_000803062.1|1109399_1110179_+	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000256597.1|1110172_1110331_+	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	100.0	3.4e-22
WP_001123684.1|1110343_1110565_+	DUF3269 family protein	NA	Q4ZBL4	Staphylococcus_phage	100.0	1.7e-35
WP_000401950.1|1110574_1110982_+	RusA family crossover junction endodeoxyribonuclease	NA	D2JGK8	Staphylococcus_phage	100.0	1.7e-73
WP_001187264.1|1110981_1111167_+	DUF3113 family protein	NA	D2JGK9	Staphylococcus_phage	100.0	7.0e-27
WP_000117792.1|1111167_1111527_+	hypothetical protein	NA	D2JGL0	Staphylococcus_phage	100.0	4.5e-62
WP_000022735.1|1111526_1111781_+	DUF3310 domain-containing protein	NA	D2JGL1	Staphylococcus_phage	100.0	1.3e-42
WP_012068339.1|1111780_1112029_+	hypothetical protein	NA	Q4ZBK9	Staphylococcus_phage	100.0	1.2e-42
WP_000695747.1|1112043_1112445_+	hypothetical protein	NA	A0EWR3	Staphylococcus_virus	100.0	5.4e-72
WP_000982708.1|1112632_1113082_+	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
WP_001105621.1|1113078_1113363_+	hypothetical protein	NA	E9LT36	Staphylococcus_phage	100.0	2.7e-46
WP_001065083.1|1113355_1113604_+	DUF1024 family protein	NA	A0A2K9VBU0	Staphylococcus_phage	100.0	3.1e-38
WP_000185669.1|1113596_1114133_+	dUTP diphosphatase	NA	R4IG63	Staphylococcus_phage	100.0	9.4e-96
WP_000195823.1|1114169_1114358_+	DUF1381 domain-containing protein	NA	A0EWR9	Staphylococcus_virus	100.0	1.8e-25
WP_001125015.1|1114332_1114533_+	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_061684985.1|1114535_1114709_+	transcriptional regulator	NA	A0EWS1	Staphylococcus_virus	98.2	6.4e-22
WP_000990005.1|1114709_1114856_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_000162700.1|1114879_1115302_+	RinA family phage transcriptional activator	NA	A0EWS3	Staphylococcus_virus	100.0	7.2e-75
WP_001003272.1|1115488_1115929_+|terminase	terminase small subunit	terminase	Q8SDV0	Staphylococcus_phage	100.0	2.8e-74
WP_000169946.1|1115915_1117193_+|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	100.0	3.0e-249
WP_000921879.1|1117203_1118739_+|portal	phage portal protein	portal	A0EWS6	Staphylococcus_virus	100.0	9.0e-293
WP_001133041.1|1118745_1119741_+|capsid	minor capsid protein	capsid	A0EWS7	Staphylococcus_virus	100.0	3.4e-184
WP_000072207.1|1119813_1119984_+	hypothetical protein	NA	Q4ZDF2	Staphylococcus_virus	100.0	3.3e-23
WP_000354307.1|1120118_1120733_+	DUF4355 domain-containing protein	NA	A0EWS9	Staphylococcus_virus	100.0	4.9e-40
WP_000438504.1|1120746_1121721_+|capsid	phage major capsid protein	capsid	A0EWT0	Staphylococcus_virus	100.0	1.3e-183
WP_001114085.1|1121742_1122030_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
WP_000208960.1|1122038_1122371_+|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001268314.1|1122367_1122670_+	hypothetical protein	NA	S4V7K8	Staphylococcus_phage	100.0	1.1e-50
WP_001017815.1|1122669_1123017_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_000188650.1|1123028_1123412_+	hypothetical protein	NA	A0EWT5	Staphylococcus_virus	100.0	2.0e-68
WP_000002578.1|1123430_1124012_+|tail	phage major tail protein, TP901-1 family	tail	A0EWT6	Staphylococcus_virus	100.0	1.8e-105
WP_001100161.1|1124074_1124440_+	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000105584.1|1124469_1124814_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_000141464.1|1124830_1128295_+	hypothetical protein	NA	A0EWT9	Staphylococcus_virus	100.0	3.1e-264
WP_000350684.1|1128307_1129255_+|tail	phage tail family protein	tail	A0EWU0	Staphylococcus_virus	100.0	3.6e-183
WP_000156406.1|1129263_1131165_+|tail	phage tail protein	tail	Q8SDT5	Staphylococcus_phage	100.0	0.0e+00
WP_012068325.1|1131179_1133090_+	hypothetical protein	NA	A0EWU2	Staphylococcus_virus	100.0	0.0e+00
WP_000634517.1|1133089_1134913_+|plate	BppU family phage baseplate upper protein	plate	A0EWU3	Staphylococcus_virus	100.0	0.0e+00
WP_000406972.1|1134912_1135290_+	DUF2977 domain-containing protein	NA	A0EWU4	Staphylococcus_virus	100.0	5.6e-55
WP_001800921.1|1135293_1135467_+	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
WP_000466787.1|1135507_1135807_+	DUF2951 domain-containing protein	NA	A0EWU6	Staphylococcus_virus	100.0	7.6e-47
WP_000524009.1|1135943_1137842_+	glucosaminidase domain-containing protein	NA	A0EWU7	Staphylococcus_virus	100.0	0.0e+00
WP_000276647.1|1137854_1139027_+|plate	BppU family phage baseplate upper protein	plate	A0EWU8	Staphylococcus_virus	100.0	4.1e-197
WP_000398863.1|1139032_1139428_+	hypothetical protein	NA	A0EWU9	Staphylococcus_virus	100.0	2.1e-68
WP_000354119.1|1139483_1139921_+|holin	phage holin	holin	A0EWV0	Staphylococcus_virus	100.0	1.1e-73
WP_001148128.1|1139901_1141347_+	SH3 domain-containing protein	NA	A0EWV1	Staphylococcus_virus	100.0	1.4e-295
WP_001041586.1|1142079_1144017_-	heme uptake protein IsdB	NA	NA	NA	NA	NA
WP_000160859.1|1144219_1145272_-	LPXTG-anchored heme-scavenging protein IsdA	NA	NA	NA	NA	NA
WP_000789821.1|1145480_1146164_+	heme uptake protein IsdC	NA	NA	NA	NA	NA
WP_001246698.1|1146163_1147240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001220199.1|1147236_1148115_+	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA	NA
WP_001548422.1|1148124_1149093_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_001242429.1|1149154_1149889_+	class B sortase	NA	NA	NA	NA	NA
WP_000670950.1|1149907_1150231_+	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA	NA
WP_001788617.1|1150267_1150375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435374.1|1150614_1151355_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_000003559.1|1151735_1152794_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
WP_000908982.1|1152793_1155196_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
>prophage 6
NC_009641	Staphylococcus aureus subsp. aureus str. Newman, complete genome	2878897	1626114	1634426	2878897	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1626114_1626900_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1627025_1627916_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1627925_1629272_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1629385_1630486_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1630488_1631166_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1631296_1632403_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1632626_1634426_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 7
NC_009641	Staphylococcus aureus subsp. aureus str. Newman, complete genome	2878897	1703564	1712607	2878897	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1703564_1704083_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1704104_1706378_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1706580_1708860_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1709134_1709395_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1709413_1710553_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1710575_1711601_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1711602_1712607_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NC_009641	Staphylococcus aureus subsp. aureus str. Newman, complete genome	2878897	1838437	1919918	2878897	tRNA,protease,transposase	Staphylococcus_phage(93.22%)	75	NA	NA
WP_001050548.1|1838437_1844998_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
WP_000836465.1|1845323_1845635_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001549041.1|1845656_1848074_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1848361_1849543_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1849652_1850606_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1850602_1851166_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1851285_1851687_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1853265_1854093_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1854095_1854215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1854326_1855328_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1855449_1855914_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1855926_1857108_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1857118_1857751_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077344.1|1857757_1858801_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_001261677.1|1859281_1860784_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1861306_1861621_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1861620_1862913_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1862930_1863326_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1863620_1864475_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1864750_1864975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1865173_1865644_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1865756_1866200_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1866186_1866630_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1866925_1867561_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1868000_1868714_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1868973_1869276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1869531_1869897_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|1869893_1870247_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1872329_1873163_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1873374_1874283_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1874407_1875601_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1875971_1877564_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000093392.1|1877699_1878185_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_002868962.1|1878559_1879306_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1879310_1879784_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1879849_1880107_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1880103_1881105_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1881109_1882588_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1882746_1883202_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_000070653.1|1884235_1885231_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000669046.1|1885306_1885933_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000627551.1|1885973_1886318_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1886415_1886967_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1887184_1887826_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1887939_1888125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1888126_1888303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1888313_1888697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1889300_1889444_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1889646_1889742_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1889864_1889966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037045.1|1890313_1890691_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000072576.1|1896173_1897373_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000028659.1|1897365_1898922_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
WP_001791797.1|1899085_1899220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1899284_1900004_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1900154_1900871_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1900972_1901080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1901028_1901748_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1901868_1902588_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1902645_1903368_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039423.1|1903492_1904209_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	96.2	2.0e-125
WP_001092762.1|1905172_1905739_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	99.5	2.1e-98
WP_000586140.1|1906212_1906911_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1906907_1907669_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1907665_1908358_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1908380_1909754_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1909763_1910282_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1910297_1911542_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|1911534_1914528_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|1914592_1914736_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1915472_1915616_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1915857_1916841_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|1916842_1917778_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_001790220.1|1918577_1919117_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000206350.1|1919129_1919918_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
>prophage 9
NC_009641	Staphylococcus aureus subsp. aureus str. Newman, complete genome	2878897	1948440	2023173	2878897	capsid,integrase,terminase,portal,tRNA,holin,transposase,tail,head,plate	Staphylococcus_phage(60.61%)	89	2012655:2012670	2027872:2027887
WP_000181398.1|1948440_1948911_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_000379978.1|1948915_1950043_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000590809.1|1950193_1950916_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
WP_000649907.1|1950908_1952366_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000063582.1|1952623_1953685_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_001808146.1|1954177_1955497_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_031784974.1|1955515_1955629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000110011.1|1963954_1964401_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000869455.1|1964497_1965448_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_000939518.1|1965453_1965909_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_001011598.1|1965989_1967279_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_001236371.1|1967571_1968666_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_001791878.1|1968755_1968848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000597238.1|1968856_1970593_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_000251253.1|1970883_1971426_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000284752.1|1971727_1972765_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000379098.1|1972916_1973894_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000886468.1|1974154_1974991_-	membrane protein	NA	NA	NA	NA	NA
WP_000535834.1|1974999_1976517_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000435806.1|1976531_1976846_-	YfhH family protein	NA	NA	NA	NA	NA
WP_001124419.1|1976823_1977642_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000830380.1|1977902_1978712_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_000163283.1|1979052_1979568_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001005407.1|1979698_1979860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100250272.1|1980206_1980287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000930256.1|1980873_1982328_-	N-acetylmuramoyl-L-alanine amidase	NA	Q4ZBP3	Staphylococcus_phage	100.0	4.0e-290
WP_000339146.1|1982339_1982642_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000398879.1|1982697_1983093_-	hypothetical protein	NA	A0EWN3	Staphylococcus_virus	100.0	6.1e-68
WP_000276643.1|1983098_1984271_-|plate	BppU family phage baseplate upper protein	plate	A0EWN2	Staphylococcus_virus	100.0	8.4e-198
WP_000524009.1|1984283_1986182_-	glucosaminidase domain-containing protein	NA	A0EWU7	Staphylococcus_virus	100.0	0.0e+00
WP_000466787.1|1986318_1986618_-	DUF2951 domain-containing protein	NA	A0EWU6	Staphylococcus_virus	100.0	7.6e-47
WP_078061239.1|1986658_1986832_-	XkdX family protein	NA	A0EWM9	Staphylococcus_virus	100.0	7.8e-28
WP_000406972.1|1986835_1987213_-	DUF2977 domain-containing protein	NA	A0EWU4	Staphylococcus_virus	100.0	5.6e-55
WP_000259598.1|1987212_1989036_-|plate	BppU family phage baseplate upper protein	plate	A0EWM7	Staphylococcus_virus	100.0	0.0e+00
WP_000369015.1|1989035_1990946_-	hypothetical protein	NA	A0EWM6	Staphylococcus_virus	100.0	0.0e+00
WP_000156404.1|1990960_1992862_-|tail	phage tail protein	tail	Q4ZDD8	Staphylococcus_virus	100.0	0.0e+00
WP_000350680.1|1992870_1993818_-|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	100.0	2.1e-183
WP_000141456.1|1993830_1997298_-	hypothetical protein	NA	A0EWM3	Staphylococcus_virus	100.0	6.2e-249
WP_000105584.1|1997314_1997659_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_001100167.1|1997688_1998054_-	hypothetical protein	NA	S4V9M6	Staphylococcus_phage	100.0	2.8e-59
WP_000002577.1|1998115_1998697_-|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
WP_000188649.1|1998715_1999099_-	hypothetical protein	NA	A0A0F6N3L1	Staphylococcus_phage	100.0	1.5e-68
WP_001017815.1|1999110_1999458_-	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_001268314.1|1999457_1999760_-	hypothetical protein	NA	S4V7K8	Staphylococcus_phage	100.0	1.1e-50
WP_000208960.1|1999756_2000089_-|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001114085.1|2000097_2000385_-	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
WP_000438504.1|2000406_2001381_-|capsid	phage major capsid protein	capsid	A0EWT0	Staphylococcus_virus	100.0	1.3e-183
WP_000354303.1|2001394_2002009_-	DUF4355 domain-containing protein	NA	A0EWL3	Staphylococcus_virus	100.0	4.9e-40
WP_000072207.1|2002143_2002314_-	hypothetical protein	NA	Q4ZDF2	Staphylococcus_virus	100.0	3.3e-23
WP_001133041.1|2002386_2003382_-|capsid	minor capsid protein	capsid	A0EWS7	Staphylococcus_virus	100.0	3.4e-184
WP_000921879.1|2003388_2004924_-|portal	phage portal protein	portal	A0EWS6	Staphylococcus_virus	100.0	9.0e-293
WP_000169946.1|2004934_2006212_-|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	100.0	3.0e-249
WP_001003272.1|2006198_2006639_-|terminase	terminase small subunit	terminase	Q8SDV0	Staphylococcus_phage	100.0	2.8e-74
WP_000162700.1|2006825_2007248_-	RinA family phage transcriptional activator	NA	A0EWS3	Staphylococcus_virus	100.0	7.2e-75
WP_000990005.1|2007271_2007418_-	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_061684985.1|2007418_2007592_-	transcriptional regulator	NA	A0EWS1	Staphylococcus_virus	98.2	6.4e-22
WP_001125015.1|2007594_2007795_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195823.1|2007769_2007958_-	DUF1381 domain-containing protein	NA	A0EWR9	Staphylococcus_virus	100.0	1.8e-25
WP_000185669.1|2007993_2008530_-	dUTP diphosphatase	NA	R4IG63	Staphylococcus_phage	100.0	9.4e-96
WP_001065083.1|2008522_2008771_-	DUF1024 family protein	NA	A0A2K9VBU0	Staphylococcus_phage	100.0	3.1e-38
WP_001105621.1|2008763_2009048_-	hypothetical protein	NA	E9LT36	Staphylococcus_phage	100.0	2.7e-46
WP_000982708.1|2009044_2009494_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
WP_000695747.1|2009681_2010083_-	hypothetical protein	NA	A0EWR3	Staphylococcus_virus	100.0	5.4e-72
WP_012068339.1|2010097_2010346_-	hypothetical protein	NA	Q4ZBK9	Staphylococcus_phage	100.0	1.2e-42
WP_000022735.1|2010345_2010600_-	DUF3310 domain-containing protein	NA	D2JGL1	Staphylococcus_phage	100.0	1.3e-42
WP_000117792.1|2010599_2010959_-	hypothetical protein	NA	D2JGL0	Staphylococcus_phage	100.0	4.5e-62
WP_001187264.1|2010959_2011145_-	DUF3113 family protein	NA	D2JGK9	Staphylococcus_phage	100.0	7.0e-27
WP_000401950.1|2011144_2011552_-	RusA family crossover junction endodeoxyribonuclease	NA	D2JGK8	Staphylococcus_phage	100.0	1.7e-73
WP_001123684.1|2011561_2011783_-	DUF3269 family protein	NA	Q4ZBL4	Staphylococcus_phage	100.0	1.7e-35
WP_000256597.1|2011795_2011954_-	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	100.0	3.4e-22
WP_000803062.1|2011947_2012727_-	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
2012655:2012670	attL	ATCCTTTTTCGACATG	NA	NA	NA	NA
WP_000190223.1|2012736_2013507_-	conserved phage C-terminal domain-containing protein	NA	A0A0N6WMQ8	Staphylococcus_phage	100.0	1.8e-116
WP_000371250.1|2013571_2014429_+	DUF4393 domain-containing protein	NA	Q4ZBL8	Staphylococcus_phage	100.0	9.5e-159
WP_001199439.1|2014534_2015206_-	hypothetical protein	NA	A7TWM9	Staphylococcus_phage	100.0	2.0e-127
WP_000704705.1|2015218_2015770_-	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
WP_000134097.1|2015798_2016587_-	ATP-binding protein	NA	Q4ZBM5	Staphylococcus_phage	100.0	2.6e-142
WP_000815401.1|2016579_2016801_-	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000291089.1|2016810_2017071_-	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.2e-43
WP_000066021.1|2017162_2017324_-	DUF1270 family protein	NA	Q4ZBM9	Staphylococcus_phage	100.0	3.8e-21
WP_000594789.1|2017316_2017538_-	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	100.0	8.7e-32
WP_000395455.1|2017608_2017839_+	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
WP_001148638.1|2018014_2018761_-	phage antirepressor KilAC domain-containing protein	NA	A0A0H4J326	Staphylococcus_phage	100.0	1.4e-137
WP_000856472.1|2019402_2019639_+	hypothetical protein	NA	Q4ZBN3	Staphylococcus_phage	98.7	2.3e-38
WP_001153175.1|2019631_2019793_-	hypothetical protein	NA	Q4ZBN4	Staphylococcus_phage	100.0	1.9e-20
WP_000762453.1|2019807_2020041_-	helix-turn-helix transcriptional regulator	NA	A0EWH6	Staphylococcus_virus	100.0	1.5e-37
WP_000874708.1|2020252_2020891_+	LexA family transcriptional regulator	NA	A0EWH5	Staphylococcus_virus	100.0	1.1e-116
WP_000392183.1|2020922_2021855_+	hypothetical protein	NA	A0EX19	Staphylococcus_virus	100.0	6.7e-174
WP_000337827.1|2021834_2022014_-	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_001145722.1|2022126_2023173_+|integrase	site-specific integrase	integrase	Q4ZB10	Staphylococcus_virus	100.0	5.5e-201
2027872:2027887	attR	CATGTCGAAAAAGGAT	NA	NA	NA	NA
>prophage 10
NC_009641	Staphylococcus aureus subsp. aureus str. Newman, complete genome	2878897	2047507	2143496	2878897	capsid,integrase,terminase,protease,portal,tRNA,holin,head,tail	Staphylococcus_phage(91.14%)	117	2108714:2108731	2133417:2133434
WP_000170163.1|2047507_2047810_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957010.1|2048176_2049715_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831698.1|2049803_2051003_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|2051015_2053019_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|2053022_2055215_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272070.1|2055211_2055904_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2056075_2056378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2056486_2057782_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827749.1|2058642_2059809_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2059839_2060166_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2060457_2060631_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2060611_2061214_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2061484_2062306_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|2062298_2063768_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|2063951_2065028_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177817.1|2065047_2065842_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2065913_2066021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2066031_2067594_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|2067798_2068896_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|2069267_2069828_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2069880_2070810_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2071004_2071178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|2071229_2072609_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2072728_2073757_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2074026_2074428_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2075000_2075174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2075624_2076665_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2076721_2077564_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2077560_2078118_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2078177_2078702_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2078822_2079386_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2079451_2080192_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2080191_2081064_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2081060_2081741_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2081741_2082638_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2082634_2083015_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2083278_2083455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2083697_2083796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2083995_2085282_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001549158.1|2085906_2087661_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|2088629_2088809_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2089119_2089380_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2089432_2089783_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|2090467_2090917_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000919350.1|2091996_2092488_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2092678_2093434_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2093445_2093700_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2093751_2093859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2093911_2094088_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000750406.1|2094196_2094970_-	staphylococcal enterotoxin type A	NA	A0EX09	Staphylococcus_phage	100.0	2.2e-146
WP_000340977.1|2095390_2095765_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001040259.1|2095820_2096108_-	hypothetical protein	NA	G4KNR2	Staphylococcus_phage	100.0	9.9e-44
WP_001153681.1|2096154_2096307_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582190.1|2096296_2100082_-	hypothetical protein	NA	A0EX05	Staphylococcus_phage	100.0	0.0e+00
WP_000567413.1|2100097_2101582_-|tail	phage tail family protein	tail	A0EX04	Staphylococcus_phage	100.0	4.5e-297
WP_001643732.1|2101578_2106108_-|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	100.0	0.0e+00
WP_001549167.1|2106164_2106302_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096355.1|2106352_2106703_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|2106752_2106977_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268735.1|2107018_2107663_-|tail	phage tail protein	tail	A0EWZ9	Staphylococcus_phage	100.0	3.8e-120
WP_000565498.1|2107663_2108071_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114226.1|2108067_2108472_-	HK97 gp10 family phage protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|2108468_2108831_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2108714:2108731	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2108814_2109099_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2109088_2109373_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|2109392_2110538_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2110561_2111299_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2111282_2112470_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2112485_2114147_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2114143_2114488_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2114617_2114917_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2115148_2115565_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|2115592_2115793_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|2115792_2115942_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592210.1|2115938_2116325_-	hypothetical protein	NA	A0EWY4	Staphylococcus_phage	100.0	5.2e-64
WP_000195803.1|2116321_2116528_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000185659.1|2116564_2117107_-	dUTP pyrophosphatase	NA	A0EWY2	Staphylococcus_phage	100.0	1.1e-96
WP_000028422.1|2117099_2117282_-	hypothetical protein	NA	A0EWY1	Staphylococcus_phage	100.0	2.6e-26
WP_001065091.1|2117271_2117523_-	DUF1024 family protein	NA	A0EWY0	Staphylococcus_phage	100.0	1.9e-38
WP_001624242.1|2117515_2117683_-	hypothetical protein	NA	A0EWX9	Staphylococcus_phage	100.0	7.8e-25
WP_000131366.1|2117694_2117937_-	hypothetical protein	NA	A0EWX8	Staphylococcus_phage	100.0	3.9e-41
WP_000101274.1|2117940_2118309_-	hypothetical protein	NA	W5RAK8	Staphylococcus_phage	100.0	8.2e-51
WP_000401960.1|2118321_2118726_-	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000338530.1|2118734_2118953_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148316.1|2118959_2119844_-	DnaD domain protein	NA	A0EWX4	Staphylococcus_phage	100.0	5.4e-141
WP_000934764.1|2119873_2120344_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	100.0	7.4e-81
WP_071621397.1|2120344_2120962_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000138472.1|2121042_2121963_-	recombinase RecT	NA	S4SUN6	Staphylococcus_phage	100.0	2.3e-166
WP_000700577.1|2121964_2123908_-	AAA family ATPase	NA	A0EWX0	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|2123916_2124180_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291503.1|2124188_2124449_-	DUF1108 family protein	NA	A0EWW8	Staphylococcus_phage	100.0	8.9e-44
WP_000165362.1|2124429_2124756_-	DUF2482 family protein	NA	A0EWW7	Staphylococcus_phage	100.0	1.6e-53
WP_000066017.1|2124850_2125012_-	DUF1270 domain-containing protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
WP_001120197.1|2125008_2125329_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|2125387_2126020_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|2126034_2126175_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_001148855.1|2126205_2126403_-	hypothetical protein	NA	Q8SDM8	Staphylococcus_phage	100.0	7.0e-33
WP_001148605.1|2126418_2127171_-	phage antirepressor KilAC domain-containing protein	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_000128907.1|2127221_2127551_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001025874.1|2127539_2127755_-	DUF2829 domain-containing protein	NA	A0EWV9	Staphylococcus_phage	100.0	6.3e-35
WP_000854072.1|2127770_2128034_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|2128030_2128204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2128166_2128880_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2128895_2129828_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2129833_2130175_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705248.1|2130378_2130561_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000825947.1|2130660_2131125_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000857191.1|2131183_2132221_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000595324.1|2133339_2134356_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2133417:2133434	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791407.1|2134377_2135433_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206638.1|2135867_2137091_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812008.1|2137462_2138308_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2138369_2139281_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|2139441_2140749_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|2141601_2142045_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011447041.1|2142150_2142588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293058.1|2142905_2143496_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
