assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000010425.1_ASM1042v1	NC_008618	Bifidobacterium adolescentis ATCC 15703, complete genome	1	346352-346545	1	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GATCGTGATTATGATGATCGTCCGCGTCGCCGTCGTTCCGACCG	44	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5	NA|226aa|up_1|NC_008618.1_342719_343397_+,NA	NA|231aa|up_9|NC_008618.1_322802_323495_+	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|260aa|up_8|NC_008618.1_323642_324422_-	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|317aa|up_7|NC_008618.1_326682_327633_+	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|198aa|up_6|NC_008618.1_328047_328641_-	pfam02632, BioY, BioY family	NA|635aa|up_5|NC_008618.1_328836_330741_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|549aa|up_4|NC_008618.1_330737_332384_+	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|3112aa|up_3|NC_008618.1_332458_341794_+	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|153aa|up_2|NC_008618.1_341952_342411_+	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|226aa|up_1|NC_008618.1_342719_343397_+	NA	NA|90aa|up_0|NC_008618.1_343551_343821_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|187aa|down_0|NC_008618.1_347031_347592_+	pfam04011, LemA, LemA family	NA|741aa|down_1|NC_008618.1_347730_349953_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|731aa|down_2|NC_008618.1_350020_352213_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|288aa|down_3|NC_008618.1_352450_353314_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|226aa|down_4|NC_008618.1_353415_354093_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|504aa|down_5|NC_008618.1_354367_355879_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|530aa|down_6|NC_008618.1_355969_357559_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|344aa|down_7|NC_008618.1_357613_358645_+	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase	NA|276aa|down_8|NC_008618.1_358775_359603_+	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production	NA|229aa|down_9|NC_008618.1_359679_360366_+	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I:  Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins
GCF_000010425.1_ASM1042v1	NC_008618	Bifidobacterium adolescentis ATCC 15703, complete genome	2	445192-445305	2	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CGTCCGGGTCAGGGCGGCGGCCAGCGT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5	NA|231aa|up_1|NC_008618.1_442316_443009_-,NA|218aa|down_4|NC_008618.1_451994_452648_+,NA|30aa|down_5|NC_008618.1_452822_452912_+	NA|38aa|up_9|NC_008618.1_434976_435090_+	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed	NA|126aa|up_8|NC_008618.1_435226_435604_+	PRK05179, rpsM, 30S ribosomal protein S13; Validated	NA|133aa|up_7|NC_008618.1_435688_436087_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|333aa|up_6|NC_008618.1_436167_437166_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|156aa|up_5|NC_008618.1_437254_437722_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|307aa|up_4|NC_008618.1_437828_438749_+	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|727aa|up_3|NC_008618.1_438925_441106_+	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|267aa|up_2|NC_008618.1_441210_442011_+	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|231aa|up_1|NC_008618.1_442316_443009_-	NA	NA|351aa|up_0|NC_008618.1_443278_444331_+	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|168aa|down_0|NC_008618.1_447448_447952_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|357aa|down_1|NC_008618.1_447935_449006_+	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|410aa|down_2|NC_008618.1_449075_450305_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|473aa|down_3|NC_008618.1_450435_451854_-	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|218aa|down_4|NC_008618.1_451994_452648_+	NA	NA|30aa|down_5|NC_008618.1_452822_452912_+	NA	NA|233aa|down_6|NC_008618.1_453046_453745_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|446aa|down_7|NC_008618.1_453966_455304_-	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|463aa|down_8|NC_008618.1_455408_456797_-	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing	NA|272aa|down_9|NC_008618.1_456798_457614_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
GCF_000010425.1_ASM1042v1	NC_008618	Bifidobacterium adolescentis ATCC 15703, complete genome	3	1456091-1461835	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,WYL,csa3,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-U,Type I-C, Type I-U?	ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC,ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC,ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	33,33,33	1	1	1457200-1457233	NC_008618.1_858242-858209	NA:NA:NA	85,85,85	85	TypeI-U,TypeI-C,TypeI-U?	cas3,WYL,csa3,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5	NA|110aa|up_1|NC_008618.1_1453428_1453758_+,NA	NA|300aa|up_9|NC_008618.1_1444661_1445561_-	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|259aa|up_8|NC_008618.1_1445646_1446423_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|283aa|up_7|NC_008618.1_1446502_1447351_+	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|409aa|up_6|NC_008618.1_1447506_1448733_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|182aa|up_5|NC_008618.1_1448933_1449479_+	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|558aa|up_4|NC_008618.1_1449637_1451311_+	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|315aa|up_3|NC_008618.1_1451447_1452392_-	pfam01112, Asparaginase_2, Asparaginase	NA|113aa|up_2|NC_008618.1_1452889_1453228_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|110aa|up_1|NC_008618.1_1453428_1453758_+	NA	NA|296aa|up_0|NC_008618.1_1454592_1455480_+	pfam00665, rve, Integrase core domain	cas2|97aa|down_0|NC_008618.1_1462227_1462518_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|NC_008618.1_1462585_1463617_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|226aa|down_2|NC_008618.1_1463616_1464294_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|282aa|down_3|NC_008618.1_1464328_1465174_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|289aa|down_4|NC_008618.1_1465227_1466094_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas8c|344aa|down_5|NC_008618.1_1466098_1467130_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|241aa|down_6|NC_008618.1_1467133_1467856_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|806aa|down_7|NC_008618.1_1468121_1470539_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|1111aa|down_8|NC_008618.1_1470787_1474120_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|491aa|down_9|NC_008618.1_1474509_1475982_-	TIGR00792, Melibiose_carrier_protein, sugar (Glycoside-Pentoside-Hexuronide) transporter
GCF_000010425.1_ASM1042v1	NC_008618	Bifidobacterium adolescentis ATCC 15703, complete genome	4	1574147-1574285	2	PILER-CR	no		cas3,WYL,csa3,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CGCTTTCCTCAGGGTGGGCATTCTGACCGGTCTG	34	0	0	NA	NA	NA	2	2	Orphan	cas3,WYL,csa3,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5	NA|346aa|up_9|NC_008618.1_1563205_1564243_-,NA|159aa|up_8|NC_008618.1_1564396_1564873_-,NA|139aa|up_7|NC_008618.1_1564902_1565319_-,NA|470aa|up_6|NC_008618.1_1565315_1566725_-,NA|496aa|up_5|NC_008618.1_1566871_1568359_-,NA|113aa|up_3|NC_008618.1_1570487_1570826_-,NA|163aa|up_1|NC_008618.1_1571548_1572037_-,NA|152aa|up_0|NC_008618.1_1573040_1573496_-,NA|46aa|down_0|NC_008618.1_1574652_1574790_-,NA|283aa|down_1|NC_008618.1_1576069_1576918_-,NA|302aa|down_8|NC_008618.1_1584356_1585262_-,NA|105aa|down_9|NC_008618.1_1585318_1585633_-	NA|346aa|up_9|NC_008618.1_1563205_1564243_-	NA	NA|159aa|up_8|NC_008618.1_1564396_1564873_-	NA	NA|139aa|up_7|NC_008618.1_1564902_1565319_-	NA	NA|470aa|up_6|NC_008618.1_1565315_1566725_-	NA	NA|496aa|up_5|NC_008618.1_1566871_1568359_-	NA	NA|708aa|up_4|NC_008618.1_1568359_1570483_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|113aa|up_3|NC_008618.1_1570487_1570826_-	NA	NA|164aa|up_2|NC_008618.1_1571020_1571512_+	COG4894, COG4894, Uncharacterized conserved protein [Function unknown]	NA|163aa|up_1|NC_008618.1_1571548_1572037_-	NA	NA|152aa|up_0|NC_008618.1_1573040_1573496_-	NA	NA|46aa|down_0|NC_008618.1_1574652_1574790_-	NA	NA|283aa|down_1|NC_008618.1_1576069_1576918_-	NA	NA|282aa|down_2|NC_008618.1_1577864_1578710_+	cd13710, PBP2_TcyK, Substrate binding domain of an ABC transporter TcyJKLMN; the type 2 periplasmic binding protein fold	NA|230aa|down_3|NC_008618.1_1578734_1579424_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|237aa|down_4|NC_008618.1_1579423_1580134_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|166aa|down_5|NC_008618.1_1580187_1580685_+	pfam14196, ATC_hydrolase, L-2-amino-thiazoline-4-carboxylic acid hydrolase	NA|256aa|down_6|NC_008618.1_1580700_1581468_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|361aa|down_7|NC_008618.1_1583245_1584328_-	pfam05257, CHAP, CHAP domain	NA|302aa|down_8|NC_008618.1_1584356_1585262_-	NA	NA|105aa|down_9|NC_008618.1_1585318_1585633_-	NA
