assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000009885.1_ASM988v1	NC_012731	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044, complete genome	1	1064753-1064892	1	CRISPRCasFinder	no	DEDDh	DEDDh,RT,cas3,WYL,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,csa3	Unclear	CTGCTGCTTCAGTTTTGTAGGCCGGGTAAGGCGCCAGCCGCCAGCCGGCA	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,WYL,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,csa3	NA,NA	NA|194aa|up_9|NC_012731.1_1056118_1056700_+	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|256aa|up_8|NC_012731.1_1056774_1057542_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|247aa|up_7|NC_012731.1_1057512_1058253_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|448aa|up_6|NC_012731.1_1058664_1060008_+	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|413aa|up_5|NC_012731.1_1060011_1061250_+	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|265aa|up_4|NC_012731.1_1061242_1062037_+	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|213aa|up_3|NC_012731.1_1062029_1062668_+	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|199aa|up_2|NC_012731.1_1062674_1063271_+	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|408aa|up_1|NC_012731.1_1063283_1064507_+	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|72aa|up_0|NC_012731.1_1064509_1064725_+	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|287aa|down_0|NC_012731.1_1064947_1065808_-	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|352aa|down_1|NC_012731.1_1065967_1067023_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|151aa|down_2|NC_012731.1_1067025_1067478_+	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|486aa|down_3|NC_012731.1_1067520_1068978_-	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|153aa|down_4|NC_012731.1_1069235_1069694_+	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|415aa|down_5|NC_012731.1_1069799_1071044_+	PRK05077, frsA, esterase FrsA	NA|133aa|down_6|NC_012731.1_1071101_1071500_+	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|231aa|down_7|NC_012731.1_1071585_1072278_-	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|467aa|down_8|NC_012731.1_1072323_1073724_-	PRK10197, PRK10197, GABA permease	NA|428aa|down_9|NC_012731.1_1073859_1075143_-	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase
GCF_000009885.1_ASM988v1	NC_012731	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044, complete genome	2	1390690-1390818	2	CRISPRCasFinder	no		DEDDh,RT,cas3,WYL,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,csa3	Orphan	GTGCCTGATGGTATCGCCCGGTGGCGCTGCGCTTACCGGGCCT	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,WYL,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,csa3	NA|130aa|up_6|NC_012731.1_1385791_1386181_+,NA|42aa|up_4|NC_012731.1_1386880_1387006_-,NA|46aa|up_3|NC_012731.1_1386968_1387106_+,NA	NA|266aa|up_9|NC_012731.1_1382518_1383316_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|343aa|up_8|NC_012731.1_1383312_1384341_-	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|373aa|up_7|NC_012731.1_1384401_1385520_-	cd01139, TroA_f, Periplasmic binding protein TroA_f	NA|130aa|up_6|NC_012731.1_1385791_1386181_+	NA	NA|152aa|up_5|NC_012731.1_1386360_1386816_+	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|42aa|up_4|NC_012731.1_1386880_1387006_-	NA	NA|46aa|up_3|NC_012731.1_1386968_1387106_+	NA	NA|393aa|up_2|NC_012731.1_1387321_1388500_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|259aa|up_1|NC_012731.1_1388519_1389296_+	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold	NA|318aa|up_0|NC_012731.1_1389424_1390378_+	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR)	NA|264aa|down_0|NC_012731.1_1391578_1392370_-	pfam17409, MoaF_C, MoaF C-terminal domain	NA|259aa|down_1|NC_012731.1_1392395_1393172_-	cd05233, SDR_c, classical (c) SDRs	NA|578aa|down_2|NC_012731.1_1393259_1394993_-	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins	NA|396aa|down_3|NC_012731.1_1395037_1396225_-	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme	NA|228aa|down_4|NC_012731.1_1396650_1397334_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|396aa|down_5|NC_012731.1_1397382_1398570_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|372aa|down_6|NC_012731.1_1398566_1399682_+	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII	NA|198aa|down_7|NC_012731.1_1399688_1400282_-	pfam11354, DUF3156, Protein of unknown function (DUF3156)	NA|500aa|down_8|NC_012731.1_1400259_1401759_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|122aa|down_9|NC_012731.1_1402131_1402497_-	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]
GCF_000009885.1_ASM988v1	NC_012731	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044, complete genome	3	1690781-1690858	3	CRISPRCasFinder	no		DEDDh,RT,cas3,WYL,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,csa3	Orphan	AAGGCGTCAGCCGCCGCCCGGCA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,WYL,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,csa3	NA,NA|71aa|down_7|NC_012731.1_1697459_1697672_-	NA|362aa|up_9|NC_012731.1_1675837_1676923_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|144aa|up_8|NC_012731.1_1677456_1677888_+	PRK15456, PRK15456, universal stress protein UspG; Provisional	NA|896aa|up_7|NC_012731.1_1677939_1680627_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|428aa|up_6|NC_012731.1_1680900_1682184_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|440aa|up_5|NC_012731.1_1682338_1683658_+	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|319aa|up_4|NC_012731.1_1683654_1684611_+	PRK01722, PRK01722, formimidoylglutamase; Provisional	NA|242aa|up_3|NC_012731.1_1684672_1685398_+	PRK14999, PRK14999, histidine utilization repressor; Provisional	NA|313aa|up_2|NC_012731.1_1686290_1687229_+	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|509aa|up_1|NC_012731.1_1687225_1688752_+	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|461aa|up_0|NC_012731.1_1688850_1690233_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|159aa|down_0|NC_012731.1_1691010_1691487_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_1|NC_012731.1_1691557_1692847_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_2|NC_012731.1_1693060_1694101_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|386aa|down_3|NC_012731.1_1694097_1695255_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_4|NC_012731.1_1695238_1695994_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|241aa|down_5|NC_012731.1_1695986_1696709_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|241aa|down_6|NC_012731.1_1696650_1697373_-	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE	NA|71aa|down_7|NC_012731.1_1697459_1697672_-	NA	NA|674aa|down_8|NC_012731.1_1698083_1700105_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|366aa|down_9|NC_012731.1_1700353_1701451_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB
GCF_000009885.1_ASM988v1	NC_012731	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044, complete genome	4	3001234-3002603	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	DEDDh,RT,cas3,WYL,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,csa3	Type I-E	GAAACACCCCCACGTGCGTGGGGAAGAC,GAAACACCCCCACGTGCGTGGGGAAGAC,GAAACACCCCCACGTGCGTGGGGAAGAC	28,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	22,22,22	22	TypeI-E	DEDDh,RT,cas3,WYL,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,csa3	NA,NA	NA|77aa|up_9|NC_012731.1_2991981_2992212_-	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]	NA|246aa|up_8|NC_012731.1_2992208_2992946_-	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|220aa|up_7|NC_012731.1_2992995_2993655_-	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|208aa|up_6|NC_012731.1_2993651_2994275_-	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|447aa|up_5|NC_012731.1_2994358_2995699_-	pfam00034, Cytochrom_C, Cytochrome c	NA|595aa|up_4|NC_012731.1_2995709_2997494_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|252aa|up_3|NC_012731.1_2997496_2998252_-	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|124aa|up_2|NC_012731.1_2998753_2999125_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|228aa|up_1|NC_012731.1_2999185_2999869_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_0|NC_012731.1_2999879_3000995_-	PHA02053, PHA02053, hypothetical protein	cas2|96aa|down_0|NC_012731.1_3002650_3002938_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|down_1|NC_012731.1_3002915_3003791_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|239aa|down_2|NC_012731.1_3003790_3004507_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|down_3|NC_012731.1_3004519_3005554_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|down_4|NC_012731.1_3005583_3006231_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|down_5|NC_012731.1_3006223_3006790_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|down_6|NC_012731.1_3006801_3008325_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|down_7|NC_012731.1_3008328_3010944_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_8|NC_012731.1_3011819_3012890_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_9|NC_012731.1_3012882_3014652_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
GCF_000009885.1_ASM988v1	NC_012731	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044, complete genome	5	3011356-3011569	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	DEDDh,RT,cas3,WYL,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,csa3	Type I-E	AGAAACACCCCCACGCGTGTGGGGAAGAC,GAAACACCCCCACGCGTGTGGGGAAGACA,AGAAACACCCCCACGCGTGTGGGGAAGACAC	29,29,31	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	3,3,2	3	TypeI-E	DEDDh,RT,cas3,WYL,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,csa3	NA,NA	NA|228aa|up_9|NC_012731.1_2999185_2999869_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_8|NC_012731.1_2999879_3000995_-	PHA02053, PHA02053, hypothetical protein	cas2|96aa|up_7|NC_012731.1_3002650_3002938_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|up_6|NC_012731.1_3002915_3003791_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|239aa|up_5|NC_012731.1_3003790_3004507_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|up_4|NC_012731.1_3004519_3005554_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|up_3|NC_012731.1_3005583_3006231_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|up_2|NC_012731.1_3006223_3006790_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|up_1|NC_012731.1_3006801_3008325_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|up_0|NC_012731.1_3008328_3010944_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_0|NC_012731.1_3011819_3012890_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_1|NC_012731.1_3012882_3014652_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|363aa|down_2|NC_012731.1_3014725_3015814_-	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|360aa|down_3|NC_012731.1_3016116_3017196_+	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|717aa|down_4|NC_012731.1_3017443_3019594_+	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|54aa|down_5|NC_012731.1_3019636_3019798_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|400aa|down_6|NC_012731.1_3021089_3022289_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|145aa|down_7|NC_012731.1_3022405_3022840_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|down_8|NC_012731.1_3023405_3024638_+	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|131aa|down_9|NC_012731.1_3024674_3025067_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
