The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_012731	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044, complete genome	5248520	1818121	1827585	5248520	protease,tRNA	Dickeya_phage(16.67%)	8	NA	NA
WP_002896440.1|1818121_1819237_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	52.7	1.3e-06
WP_004150848.1|1819233_1821174_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	40.5	1.9e-37
WP_002896516.1|1821250_1821472_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	1.3e-16
WP_002896520.1|1821797_1822115_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	2.0e-13
WP_002896522.1|1822145_1824425_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.0	1.6e-165
WP_001040187.1|1824545_1824764_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_002898014.1|1825117_1825819_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_012737718.1|1825863_1827585_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	34.3	1.5e-14
>prophage 2
NC_012731	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044, complete genome	5248520	2076638	2116366	5248520	integrase,tRNA,transposase,holin	Salmonella_phage(25.0%)	47	2082241:2082255	2118884:2118898
WP_085955203.1|2076638_2078001_+|transposase	IS3-like element ISKpn1 family transposase	transposase	A0A1B1P773	Bacillus_phage	51.5	1.4e-74
WP_004190938.1|2078086_2078578_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_004176560.1|2078715_2079837_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_015874641.1|2079922_2081389_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA	NA
WP_004150807.1|2081388_2082060_-	two-component system response regulator PhoP	NA	NA	NA	NA	NA
2082241:2082255	attL	AACGCCCAGCGGCAG	NA	NA	NA	NA
WP_004179353.1|2082342_2083149_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_004213084.1|2083232_2083595_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_004176557.1|2083649_2085020_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	45.3	1.2e-107
WP_004140557.1|2085023_2085665_-	high frequency lysogenization protein HflD	NA	NA	NA	NA	NA
WP_050767838.1|2085719_2086826_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_004150802.1|2086882_2087341_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_004150801.1|2087357_2088008_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
WP_004150800.1|2088248_2089499_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.1e-19
WP_015874644.1|2089611_2090754_-|integrase	phage integrase Arm DNA-binding domain-containing protein	integrase	Q77Z02	Phage_21	81.6	2.6e-172
WP_008806034.1|2090743_2090980_-	excisionase	NA	NA	NA	NA	NA
WP_015874646.1|2091812_2092121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015874647.1|2092248_2093034_-	hypothetical protein	NA	C7BGF1	Burkholderia_phage	53.3	4.8e-64
WP_041937771.1|2093026_2093227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041937772.1|2093226_2093754_-	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	69.1	1.0e-62
WP_015874649.1|2094230_2095058_-	DUF2303 family protein	NA	Q8HAA2	Salmonella_phage	71.6	2.5e-111
WP_041937773.1|2095104_2095476_-	hypothetical protein	NA	Q8HAA1	Salmonella_phage	88.6	7.7e-57
WP_015874651.1|2096417_2096903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041937775.1|2097309_2097966_-	helix-turn-helix domain-containing protein	NA	K7PLZ5	Enterobacterial_phage	83.9	7.9e-105
WP_074423532.1|2098065_2098269_+	Cro/Cl family transcriptional regulator	NA	K7PHB1	Enterobacterial_phage	69.2	3.5e-19
WP_100169154.1|2098505_2098976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041937776.1|2099055_2099604_+	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	68.5	2.1e-66
WP_023322342.1|2099776_2099956_+	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	67.3	5.6e-13
WP_015874655.1|2099945_2100857_+	conserved phage C-terminal domain-containing protein	NA	A0A1C9IHW0	Salmonella_phage	73.0	3.7e-52
WP_015874656.1|2100853_2101312_+	PerC family transcriptional regulator	NA	NA	NA	NA	NA
WP_015874657.1|2101299_2102682_+	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	47.9	4.9e-104
WP_015874658.1|2102674_2104645_+	DNA cytosine methyltransferase	NA	H9C171	Pectobacterium_phage	54.0	3.7e-198
WP_015874659.1|2104641_2105118_+	hypothetical protein	NA	U5P451	Shigella_phage	60.3	6.1e-14
WP_015874660.1|2105114_2105513_+	RusA family crossover junction endodeoxyribonuclease	NA	K7PKN5	Enterobacterial_phage	70.6	4.7e-44
WP_050767832.1|2105602_2106424_+	KilA-N domain-containing protein	NA	A0A0P0ZCS0	Stx2-converting_phage	65.4	4.5e-89
WP_077250505.1|2106505_2107492_+	DUF968 domain-containing protein	NA	Q8SBE5	Shigella_phage	49.2	4.0e-92
WP_015874663.1|2107510_2108341_+	antitermination protein	NA	K7P7B9	Enterobacteria_phage	47.2	4.9e-59
WP_008806053.1|2108544_2109342_-	DUF3800 domain-containing protein	NA	Q19UP3	Mannheimia_phage	48.6	2.1e-67
WP_015874665.1|2109546_2110470_+	hypothetical protein	NA	A0A1B2IGT1	Erwinia_phage	71.7	1.5e-109
WP_173029796.1|2110472_2110625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015874666.1|2110976_2111366_+|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	79.1	2.0e-47
WP_015874667.1|2111355_2111634_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	76.1	1.8e-34
WP_015874668.1|2111633_2112260_+	glycoside hydrolase family 19 protein	NA	F1C591	Cronobacter_phage	76.3	1.2e-89
WP_041937777.1|2112262_2112538_+	hypothetical protein	NA	G8C7W1	Escherichia_phage	78.8	2.7e-06
WP_015874670.1|2112669_2112900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015874671.1|2112941_2113481_-	YfbU family protein	NA	NA	NA	NA	NA
WP_004225014.1|2113908_2114877_+|transposase	IS5 family transposase	transposase	A0A1B0VFY5	Salmonella_phage	91.3	2.2e-172
WP_004148038.1|2115451_2116366_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	NA	A0A1W6JP29	Morganella_phage	50.4	1.1e-72
2118884:2118898	attR	CTGCCGCTGGGCGTT	NA	NA	NA	NA
>prophage 3
NC_012731	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044, complete genome	5248520	2300947	2327957	5248520	plate,transposase	Cronobacter_phage(20.0%)	19	NA	NA
WP_004224345.1|2300947_2302291_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_004176431.1|2302287_2302977_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_014907726.1|2302973_2304680_+	OmpA family protein	NA	NA	NA	NA	NA
WP_002902160.1|2304684_2305176_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_015874721.1|2305439_2308094_+	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	33.3	1.4e-96
WP_041168969.1|2308086_2310786_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	32.6	8.5e-20
WP_064175886.1|2310788_2311199_+	DUF4431 domain-containing protein	NA	NA	NA	NA	NA
WP_015874724.1|2311216_2313139_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A7HER1	Arthrobacter_phage	39.8	1.7e-06
WP_015874726.1|2313826_2313931_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_015874727.1|2313902_2314094_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_086074293.1|2314144_2314939_+|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	30.4	1.9e-07
WP_014907718.1|2314925_2315996_+	TIGR02594 family protein	NA	B5SP49	Lactococcus_phage	33.3	2.5e-07
WP_032430730.1|2317265_2318474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049127998.1|2318470_2321926_+	type VI secretion protein VasK	NA	NA	NA	NA	NA
WP_015874732.1|2321925_2323524_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_014907714.1|2323554_2324610_+	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_015874733.1|2324606_2325077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004190505.1|2325153_2326908_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_004190503.1|2326871_2327957_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
>prophage 4
NC_012731	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044, complete genome	5248520	2520782	2531669	5248520		Escherichia_phage(87.5%)	9	NA	NA
WP_002210516.1|2520782_2521403_-	aldolase	NA	A0A077SK32	Escherichia_phage	100.0	8.0e-115
WP_004224682.1|2521395_2522661_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	99.8	7.8e-234
WP_002903955.1|2522672_2523575_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	99.7	2.6e-159
WP_002210513.1|2523835_2524597_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
WP_004176269.1|2524617_2525478_-	class A broad-spectrum beta-lactamase SHV-11	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
WP_014907641.1|2525775_2526036_+	hypothetical protein	NA	A0A077SK33	Escherichia_phage	97.7	2.1e-40
WP_014907640.1|2526122_2527211_+	AAA family ATPase	NA	A0A077SLJ9	Escherichia_phage	99.7	1.0e-210
WP_014907639.1|2527241_2528507_-	MFS transporter	NA	NA	NA	NA	NA
WP_014907638.1|2528561_2531669_-	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	59.6	0.0e+00
>prophage 5
NC_012731	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044, complete genome	5248520	3569864	3576769	5248520	tRNA	Bacillus_phage(33.33%)	6	NA	NA
WP_004149058.1|3569864_3571343_+	two-component system sensor histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	28.3	8.5e-30
WP_004175198.1|3571339_3572062_+	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	33.2	8.3e-31
WP_004144192.1|3572380_3573742_+|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	tRNA	Q6DW11	Phage_TP	94.8	1.8e-207
WP_004151134.1|3573984_3574881_+	lipid kinase YegS	NA	A0A1V0SBJ0	Catovirus	29.8	6.1e-15
WP_004180550.1|3575121_3575895_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.7	3.9e-26
WP_004180551.1|3575905_3576769_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.5	5.7e-10
>prophage 1
NC_006625	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 plasmid pK2044, complete sequence	224152	76578	137239	224152	integrase,transposase	Salmonella_phage(17.39%)	45	75494:75510	120955:120971
75494:75510	attL	CAACGGGGAGCAGGTCA	NA	NA	NA	NA
WP_011251287.1|76578_77547_+|transposase	IS5 family transposase	transposase	A0A1B0VFY5	Salmonella_phage	91.0	1.9e-171
WP_004213594.1|77780_78275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004213592.1|78316_81286_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.3	0.0e+00
WP_004213590.1|81288_81846_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	81.3	2.6e-48
WP_000118563.1|81975_83052_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_000405672.1|85538_85973_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_004152084.1|86268_87669_-	copper resistance membrane spanning protein PcoS	NA	W8CYF6	Bacillus_phage	26.3	4.1e-18
WP_001188930.1|87665_88346_-	copper response regulator transcription factor PcoR	NA	W8CYM9	Bacillus_phage	34.4	8.7e-30
WP_004213583.1|88400_89330_-	copper resistance inner membrane protein PcoD	NA	NA	NA	NA	NA
WP_000025662.1|89334_89715_-	copper resistance system metallochaperone PcoC	NA	NA	NA	NA	NA
WP_029884201.1|89754_90645_-	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA	NA
WP_004213580.1|90650_92468_-	multicopper oxidase PcoA	NA	NA	NA	NA	NA
WP_001023257.1|92701_93151_+	copper resistance protein	NA	NA	NA	NA	NA
WP_004118669.1|93439_94177_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A2H4JAF5	uncultured_Caudovirales_phage	32.5	1.2e-11
WP_000843497.1|94210_94408_-	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
WP_004098955.1|94448_96896_-	Ag(+)-translocating P-type ATPase SilP	NA	A0A218MNH6	uncultured_virus	35.8	7.6e-84
WP_000758228.1|97022_97463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004098958.1|97549_100696_-	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	NA	S5VTK5	Leptospira_phage	22.5	4.0e-61
WP_004213579.1|100706_101999_-	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA	NA
WP_004213578.1|102112_102475_-	cation efflux system protein CusF	NA	NA	NA	NA	NA
WP_004213577.1|102503_103889_-	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA	NA
WP_004213574.1|104078_104759_+	copper/silver response regulator transcription factor SilR	NA	W8CYM9	Bacillus_phage	35.7	1.3e-30
WP_000555737.1|104751_106227_+	copper/silver sensor histidine kinase SilS	NA	W8CYF6	Bacillus_phage	30.1	1.0e-27
WP_023302802.1|106477_106909_+	silver-binding protein SilE	NA	NA	NA	NA	NA
WP_004213569.1|107052_107403_+	DUF305 domain-containing protein	NA	A0A218MND9	uncultured_virus	53.3	3.2e-20
WP_041937823.1|107789_108698_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_004213565.1|109334_110309_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA	NA
WP_004213562.1|111232_112054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011251292.1|112050_112830_+|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	86.7	1.1e-49
WP_004213558.1|112974_113904_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	52.4	5.6e-72
WP_077250517.1|114216_114375_+	hypothetical protein	NA	A0A0U2RK18	Escherichia_phage	69.7	2.2e-05
WP_011251294.1|116290_116536_+	molecular chaperone DnaJ	NA	NA	NA	NA	NA
WP_011251296.1|117059_117926_+	ParA family protein	NA	NA	NA	NA	NA
WP_004902347.1|117925_118957_+	ParB/RepB/Spo0J family partition protein	NA	S5WII0	Leptospira_phage	26.1	2.9e-08
WP_004902343.1|118956_119394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004902338.1|119390_119714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004214667.1|121740_122523_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	96.1	3.0e-135
120955:120971	attR	TGACCTGCTCCCCGTTG	NA	NA	NA	NA
WP_004211835.1|125273_125810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004211839.1|128129_129140_-	replication initiation protein	NA	J9Q7H0	Salmonella_phage	53.5	1.1e-86
WP_004211841.1|129869_131036_+	plasmid-partitioning protein SopA	NA	A0A2I6B2X3	Macacine_betaherpesvirus	97.4	2.0e-223
WP_004117790.1|131035_132007_+	ParB/RepB/Spo0J family plasmid partition protein	NA	I3WF22	Macacine_betaherpesvirus	86.9	7.0e-150
WP_004215130.1|133591_134032_+	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	53.8	4.4e-19
WP_004189161.1|134028_134379_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	63.8	5.2e-39
WP_004902302.1|134409_136002_+|transposase	IS66-like element ISKox1 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.8	3.2e-176
WP_004213807.1|136270_137239_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	28.8	7.3e-14
