assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	1	176491-176608	1	CRISPRCasFinder	no		cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	AGCGCAGCGTCACCACGGAGGCCGCCCCGGCTCGGGCGC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA|179aa|up_7|NC_006361.1_167049_167586_+,NA|200aa|up_6|NC_006361.1_167712_168312_+,NA	NA|466aa|up_9|NC_006361.1_164668_166066_+	pfam08486, SpoIID, Stage II sporulation protein	NA|258aa|up_8|NC_006361.1_166165_166939_+	pfam07739, TipAS, TipAS antibiotic-recognition domain	NA|179aa|up_7|NC_006361.1_167049_167586_+	NA	NA|200aa|up_6|NC_006361.1_167712_168312_+	NA	NA|410aa|up_5|NC_006361.1_168439_169669_+	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|645aa|up_4|NC_006361.1_169706_171641_+	pfam17994, Glft2_N, Galactofuranosyltransferase 2 N-terminal	NA|181aa|up_3|NC_006361.1_171658_172201_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|311aa|up_2|NC_006361.1_172277_173210_+	PRK12324, PRK12324, decaprenyl-phosphate phosphoribosyltransferase	NA|621aa|up_1|NC_006361.1_173298_175161_+	pfam10101, DUF2339, Predicted membrane protein (DUF2339)	NA|327aa|up_0|NC_006361.1_175455_176436_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|354aa|down_0|NC_006361.1_176951_178013_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|346aa|down_1|NC_006361.1_178414_179452_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|595aa|down_2|NC_006361.1_179683_181468_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|177aa|down_3|NC_006361.1_181570_182101_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|312aa|down_4|NC_006361.1_182139_183075_+	pfam01083, Cutinase, Cutinase	NA|340aa|down_5|NC_006361.1_183240_184260_+	TIGR03621, F420_MSMEG_2516, probable F420-dependent oxidoreductase, MSMEG_2516 family	NA|639aa|down_6|NC_006361.1_184451_186368_+	PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated	NA|1738aa|down_7|NC_006361.1_186480_191694_+	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|515aa|down_8|NC_006361.1_191690_193235_+	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|166aa|down_9|NC_006361.1_193468_193966_-	PRK10791, PRK10791, peptidylprolyl isomerase B
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	2	584992-585195	2	CRISPRCasFinder	no		cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GGTCAGCGGCCGGAGGCGGTAGCGGAGCGTGACCACGCAGGCCGCCCCGG	50	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|157aa|down_8|NC_006361.1_595487_595958_+	NA|474aa|up_9|NC_006361.1_574111_575533_+	cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2	NA|147aa|up_8|NC_006361.1_575699_576140_+	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|320aa|up_7|NC_006361.1_576254_577214_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|328aa|up_6|NC_006361.1_577221_578205_-	pfam10092, DUF2330, Uncharacterized protein conserved in bacteria (DUF2330)	NA|717aa|up_5|NC_006361.1_578345_580496_+	COG1770, PtrB, Protease II [Amino acid transport and metabolism]	NA|234aa|up_4|NC_006361.1_580572_581274_+	COG3233, COG3233, Predicted deacetylase [General function prediction only]	NA|455aa|up_3|NC_006361.1_581485_582850_+	PRK07907, PRK07907, hypothetical protein; Provisional	NA|217aa|up_2|NC_006361.1_583271_583922_-	pfam13483, Lactamase_B_3, Beta-lactamase superfamily domain	NA|79aa|up_1|NC_006361.1_584078_584315_+	PRK05974, PRK05974, phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed	NA|226aa|up_0|NC_006361.1_584311_584989_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|359aa|down_0|NC_006361.1_585247_586324_-	cd06358, PBP1_NHase, type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides	NA|142aa|down_1|NC_006361.1_586376_586802_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|430aa|down_2|NC_006361.1_587086_588376_+	PRK02813, PRK02813, putative aminopeptidase 2; Provisional	NA|471aa|down_3|NC_006361.1_588333_589746_-	PRK13375, pimE, mannosyltransferase; Provisional	NA|765aa|down_4|NC_006361.1_589939_592234_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|578aa|down_5|NC_006361.1_592342_594076_+	pfam10081, Abhydrolase_9, Alpha/beta-hydrolase family	NA|224aa|down_6|NC_006361.1_594078_594750_+	pfam02517, Abi, CAAX protease self-immunity	NA|119aa|down_7|NC_006361.1_595036_595393_+	pfam17844, SCP_3, Bacterial SCP ortholog	NA|157aa|down_8|NC_006361.1_595487_595958_+	NA	NA|513aa|down_9|NC_006361.1_595962_597501_-	pfam12051, DUF3533, Protein of unknown function (DUF3533)
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	3	692008-692130	3	CRISPRCasFinder	no		cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GCGGGTCCGAACGGCCTGCCGCAGCGAGGTGCC	33	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA|239aa|up_9|NC_006361.1_677881_678598_+,NA	NA|239aa|up_9|NC_006361.1_677881_678598_+	NA	NA|120aa|up_8|NC_006361.1_678652_679012_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|434aa|up_7|NC_006361.1_679046_680348_-	PRK05614, gltA, citrate synthase	NA|252aa|up_6|NC_006361.1_680888_681644_-	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase	NA|383aa|up_5|NC_006361.1_681766_682915_+	PRK12350, PRK12350, citrate synthase 2; Provisional	NA|389aa|up_4|NC_006361.1_682945_684112_-	TIGR03061, hypothetical_protein_lp_1332, YhgE/Pip N-terminal domain	NA|468aa|up_3|NC_006361.1_684214_685618_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|236aa|up_2|NC_006361.1_685614_686322_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|129aa|up_1|NC_006361.1_686370_686757_-	TIGR04529, hypothetical_protein, hemophore-related protein, Rv0203/Rv1174c family	NA|667aa|up_0|NC_006361.1_686896_688897_-	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	NA|138aa|down_0|NC_006361.1_693017_693431_+	COG2018, COG2018, Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]	NA|125aa|down_1|NC_006361.1_693438_693813_+	pfam05331, DUF742, Protein of unknown function (DUF742)	NA|201aa|down_2|NC_006361.1_693793_694396_+	COG2229, COG2229, Predicted GTPase [General function prediction only]	NA|519aa|down_3|NC_006361.1_694419_695976_+	COG0825, AccA, Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]	NA|284aa|down_4|NC_006361.1_696033_696885_+	cd19131, AKR_AKR5C2, Escherichia coli 2,5-diketo-D-gluconic acid reductase A (DkgA/YqhE) and similar proteins	NA|395aa|down_5|NC_006361.1_696868_698053_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|243aa|down_6|NC_006361.1_698082_698811_+	PRK07854, PRK07854, enoyl-CoA hydratase; Provisional	NA|382aa|down_7|NC_006361.1_698807_699953_+	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain	NA|71aa|down_8|NC_006361.1_700030_700243_+	pfam14013, MT0933_antitox, MT0933-like antitoxin protein	NA|809aa|down_9|NC_006361.1_700298_702725_+	PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	4	709609-709728	4	CRISPRCasFinder	no		cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGCCTGAGCGGGGCGGCCTGCGTGGTGATGCTGCGCTGCCG	41	1	2	709650-709687|709650-709687	NC_006361.1_1299989-1300026|NC_006361.1_1300146-1300183	NA	1	1	Orphan	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA|222aa|up_1|NC_006361.1_707150_707816_-,NA|490aa|down_6|NC_006361.1_716234_717704_-,NA|338aa|down_7|NC_006361.1_717687_718701_-,NA|455aa|down_8|NC_006361.1_718987_720352_-	NA|243aa|up_9|NC_006361.1_698082_698811_+	PRK07854, PRK07854, enoyl-CoA hydratase; Provisional	NA|382aa|up_8|NC_006361.1_698807_699953_+	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain	NA|71aa|up_7|NC_006361.1_700030_700243_+	pfam14013, MT0933_antitox, MT0933-like antitoxin protein	NA|809aa|up_6|NC_006361.1_700298_702725_+	PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed	NA|75aa|up_5|NC_006361.1_702785_703010_+	pfam14013, MT0933_antitox, MT0933-like antitoxin protein	NA|219aa|up_4|NC_006361.1_703094_703751_-	PRK14878, PRK14878, UGMP family protein; Provisional	NA|246aa|up_3|NC_006361.1_704211_704949_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|713aa|up_2|NC_006361.1_704945_707084_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|222aa|up_1|NC_006361.1_707150_707816_-	NA	NA|261aa|up_0|NC_006361.1_708731_709514_-	cd02869, PseudoU_synth_RluA_like, Pseudouridine synthase, RluA family	NA|329aa|down_0|NC_006361.1_709747_710734_-	cd07302, CHD, cyclase homology domain	NA|487aa|down_1|NC_006361.1_710775_712236_-	cd00615, Orn_deC_like, Ornithine decarboxylase family	NA|478aa|down_2|NC_006361.1_712264_713698_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|97aa|down_3|NC_006361.1_713643_713934_-	pfam04326, AlbA_2, Putative DNA-binding domain	NA|226aa|down_4|NC_006361.1_714153_714831_+	cd12108, Hr-like, Hemerythrin-like domain	NA|402aa|down_5|NC_006361.1_714943_716149_-	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|490aa|down_6|NC_006361.1_716234_717704_-	NA	NA|338aa|down_7|NC_006361.1_717687_718701_-	NA	NA|455aa|down_8|NC_006361.1_718987_720352_-	NA	NA|232aa|down_9|NC_006361.1_720546_721242_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	5	893769-893871	5	CRISPRCasFinder	no		cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CAGCCAGCGCGGCCGGACGGGACCA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA|190aa|up_9|NC_006361.1_869525_870095_+,NA|105aa|up_7|NC_006361.1_870629_870944_-,NA|246aa|up_6|NC_006361.1_871026_871764_-,NA|499aa|up_5|NC_006361.1_871789_873286_-,NA|104aa|up_1|NC_006361.1_877959_878271_+,NA|171aa|up_0|NC_006361.1_878288_878801_+,NA|463aa|down_0|NC_006361.1_900707_902096_+,NA|113aa|down_3|NC_006361.1_904873_905212_+,NA|107aa|down_5|NC_006361.1_905672_905993_+	NA|190aa|up_9|NC_006361.1_869525_870095_+	NA	NA|171aa|up_8|NC_006361.1_870101_870614_-	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family	NA|105aa|up_7|NC_006361.1_870629_870944_-	NA	NA|246aa|up_6|NC_006361.1_871026_871764_-	NA	NA|499aa|up_5|NC_006361.1_871789_873286_-	NA	NA|285aa|up_4|NC_006361.1_873484_874339_+	cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs	NA|144aa|up_3|NC_006361.1_874346_874778_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|267aa|up_2|NC_006361.1_876969_877770_+	pfam14011, ESX-1_EspG, EspG family	NA|104aa|up_1|NC_006361.1_877959_878271_+	NA	NA|171aa|up_0|NC_006361.1_878288_878801_+	NA	NA|463aa|down_0|NC_006361.1_900707_902096_+	NA	NA|597aa|down_1|NC_006361.1_902257_904048_+	pfam13779, DUF4175, Domain of unknown function (DUF4175)	NA|262aa|down_2|NC_006361.1_904044_904830_+	pfam14011, ESX-1_EspG, EspG family	NA|113aa|down_3|NC_006361.1_904873_905212_+	NA	NA|100aa|down_4|NC_006361.1_905250_905550_+	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family	NA|107aa|down_5|NC_006361.1_905672_905993_+	NA	NA|430aa|down_6|NC_006361.1_905989_907279_+	PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated	NA|114aa|down_7|NC_006361.1_907293_907635_+	pfam00934, PE, PE family	NA|328aa|down_8|NC_006361.1_907666_908650_+	pfam00823, PPE, PPE family	NA|265aa|down_9|NC_006361.1_908646_909441_+	pfam14011, ESX-1_EspG, EspG family
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	6	1068072-1068175	6	CRISPRCasFinder	no		cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	ACGCCGAGCCAGCCGGGTGTCACCAC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|59aa|down_5|NC_006361.1_1075984_1076161_-	NA|375aa|up_9|NC_006361.1_1057285_1058410_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|106aa|up_8|NC_006361.1_1058414_1058732_-	PLN03224, PLN03224, probable serine/threonine protein kinase; Provisional	NA|208aa|up_7|NC_006361.1_1058878_1059502_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|498aa|up_6|NC_006361.1_1059581_1061075_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|268aa|up_5|NC_006361.1_1061148_1061952_-	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|235aa|up_4|NC_006361.1_1062042_1062747_+	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|415aa|up_3|NC_006361.1_1062816_1064061_+	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily	NA|390aa|up_2|NC_006361.1_1064216_1065386_+	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|160aa|up_1|NC_006361.1_1065440_1065920_-	pfam13772, AIG2_2, AIG2-like family	NA|470aa|up_0|NC_006361.1_1066079_1067489_+	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed	NA|336aa|down_0|NC_006361.1_1069073_1070081_+	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|394aa|down_1|NC_006361.1_1070169_1071351_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|500aa|down_2|NC_006361.1_1071752_1073252_-	cd07789, FGGY_CsGK_like, Cellulomonas sp	NA|578aa|down_3|NC_006361.1_1073595_1075329_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|191aa|down_4|NC_006361.1_1075332_1075905_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|59aa|down_5|NC_006361.1_1075984_1076161_-	NA	NA|181aa|down_6|NC_006361.1_1076266_1076809_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|1585aa|down_7|NC_006361.1_1076890_1081645_+	PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional	NA|260aa|down_8|NC_006361.1_1081631_1082411_+	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]	NA|652aa|down_9|NC_006361.1_1082526_1084482_+	pfam00732, GMC_oxred_N, GMC oxidoreductase
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	7	1124577-1124693	7	CRISPRCasFinder	no		cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GCCTGAGCGGTCAGCGGCCGGAGGCGGTAGCGGAGCGTGAC	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|278aa|down_4|NC_006361.1_1129599_1130433_+,NA|71aa|down_6|NC_006361.1_1131633_1131846_+,NA|61aa|down_7|NC_006361.1_1131993_1132176_+	NA|147aa|up_9|NC_006361.1_1115344_1115785_-	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides	NA|373aa|up_8|NC_006361.1_1116050_1117169_+	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains	NA|105aa|up_7|NC_006361.1_1117168_1117483_+	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch	NA|473aa|up_6|NC_006361.1_1117488_1118907_+	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit	NA|80aa|up_5|NC_006361.1_1118997_1119237_-	PRK06771, PRK06771, hypothetical protein; Provisional	NA|424aa|up_4|NC_006361.1_1119246_1120518_-	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters	NA|131aa|up_3|NC_006361.1_1120609_1121002_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|273aa|up_2|NC_006361.1_1120991_1121810_-	cd05233, SDR_c, classical (c) SDRs	NA|165aa|up_1|NC_006361.1_1121834_1122329_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|371aa|up_0|NC_006361.1_1122498_1123611_+	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|511aa|down_0|NC_006361.1_1124733_1126266_+	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|275aa|down_1|NC_006361.1_1126352_1127177_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|225aa|down_2|NC_006361.1_1127190_1127865_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|400aa|down_3|NC_006361.1_1128037_1129237_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|278aa|down_4|NC_006361.1_1129599_1130433_+	NA	NA|218aa|down_5|NC_006361.1_1130490_1131144_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|71aa|down_6|NC_006361.1_1131633_1131846_+	NA	NA|61aa|down_7|NC_006361.1_1131993_1132176_+	NA	NA|312aa|down_8|NC_006361.1_1132210_1133146_-	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|939aa|down_9|NC_006361.1_1133248_1136065_+	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	8	1304035-1304133	8	CRISPRCasFinder	no		cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CACCGCCTGAGCGGTCAGCGGCC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA|737aa|up_7|NC_006361.1_1293410_1295621_+,NA|50aa|down_5|NC_006361.1_1309727_1309877_+	NA|817aa|up_9|NC_006361.1_1289118_1291569_-	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|449aa|up_8|NC_006361.1_1291826_1293173_+	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|737aa|up_7|NC_006361.1_1293410_1295621_+	NA	NA|171aa|up_6|NC_006361.1_1295617_1296130_+	pfam04138, GtrA, GtrA-like protein	NA|170aa|up_5|NC_006361.1_1296258_1296768_+	pfam03734, YkuD, L,D-transpeptidase catalytic domain	NA|554aa|up_4|NC_006361.1_1296792_1298454_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|202aa|up_3|NC_006361.1_1298679_1299285_+	cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease	NA|198aa|up_2|NC_006361.1_1299281_1299875_+	cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease	NA|124aa|up_1|NC_006361.1_1300321_1300693_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|569aa|up_0|NC_006361.1_1300802_1302509_+	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|531aa|down_0|NC_006361.1_1304147_1305740_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|281aa|down_1|NC_006361.1_1305880_1306723_+	PRK08260, PRK08260, enoyl-CoA hydratase; Provisional	NA|364aa|down_2|NC_006361.1_1306791_1307883_-	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|332aa|down_3|NC_006361.1_1307927_1308923_-	cd03531, Rieske_RO_Alpha_KSH, The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH)	NA|212aa|down_4|NC_006361.1_1309019_1309655_+	pfam18360, hnRNP_Q_AcD, Heterogeneous nuclear ribonucleoprotein Q acidic domain	NA|50aa|down_5|NC_006361.1_1309727_1309877_+	NA	NA|236aa|down_6|NC_006361.1_1309951_1310659_+	pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain	NA|304aa|down_7|NC_006361.1_1310834_1311746_+	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism]	NA|299aa|down_8|NC_006361.1_1311783_1312680_-	pfam01083, Cutinase, Cutinase	NA|181aa|down_9|NC_006361.1_1312908_1313451_+	pfam07152, YaeQ, YaeQ protein
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	9	2953122-2953235	9	CRISPRCasFinder	no	csa3	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-A	CACCGTCTGAGCGGGTCAGCGCCCGGAGGCGGCAGC	36	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|175aa|down_6|NC_006361.1_2961589_2962114_+,NA|159aa|down_8|NC_006361.1_2963073_2963550_-,NA|409aa|down_9|NC_006361.1_2963603_2964830_-	NA|257aa|up_9|NC_006361.1_2940012_2940783_+	PRK07231, FabG-like, SDR family oxidoreductase	NA|208aa|up_8|NC_006361.1_2940816_2941440_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|488aa|up_7|NC_006361.1_2941609_2943073_-	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|268aa|up_6|NC_006361.1_2943116_2943920_-	COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]	NA|263aa|up_5|NC_006361.1_2943904_2944693_-	TIGR02312, 2-keto-4-pentenoate_hydratase, 2-oxo-hepta-3-ene-1,7-dioic acid hydratase	NA|385aa|up_4|NC_006361.1_2944711_2945866_-	TIGR02295, Substrate_Complex_Of_Homoprotocatechuate, 3,4-dihydroxyphenylacetate 2,3-dioxygenase	NA|501aa|up_3|NC_006361.1_2945903_2947406_-	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like	NA|238aa|up_2|NC_006361.1_2947439_2948153_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|496aa|up_1|NC_006361.1_2948166_2949654_-	PRK12764, PRK12764, fumarylacetoacetate hydrolase family protein	NA|450aa|up_0|NC_006361.1_2949759_2951109_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|233aa|down_0|NC_006361.1_2953236_2953935_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|325aa|down_1|NC_006361.1_2954059_2955034_+	PRK09685, PRK09685, DNA-binding transcriptional activator FeaR; Provisional	NA|475aa|down_2|NC_006361.1_2955117_2956542_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|515aa|down_3|NC_006361.1_2956567_2958112_+	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|645aa|down_4|NC_006361.1_2958231_2960166_+	PRK11504, tynA, primary-amine oxidase	NA|473aa|down_5|NC_006361.1_2960158_2961577_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|175aa|down_6|NC_006361.1_2961589_2962114_+	NA	NA|196aa|down_7|NC_006361.1_2962168_2962756_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|159aa|down_8|NC_006361.1_2963073_2963550_-	NA	NA|409aa|down_9|NC_006361.1_2963603_2964830_-	NA
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	10	3099393-3099499	10	CRISPRCasFinder	no		cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGGCCGCTGACCCGCTCAGGCGGTGTCGG	29	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA|334aa|up_9|NC_006361.1_3087354_3088356_-,NA|108aa|up_5|NC_006361.1_3091947_3092271_+,NA|85aa|down_0|NC_006361.1_3100603_3100858_-,NA|348aa|down_1|NC_006361.1_3100857_3101901_-,NA|116aa|down_2|NC_006361.1_3102052_3102400_+,NA|179aa|down_3|NC_006361.1_3102406_3102943_+,NA|46aa|down_8|NC_006361.1_3107166_3107304_-	NA|334aa|up_9|NC_006361.1_3087354_3088356_-	NA	NA|203aa|up_8|NC_006361.1_3088437_3089046_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|664aa|up_7|NC_006361.1_3089135_3091127_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|208aa|up_6|NC_006361.1_3091157_3091781_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|108aa|up_5|NC_006361.1_3091947_3092271_+	NA	NA|453aa|up_4|NC_006361.1_3092364_3093723_+	PRK07906, PRK07906, hypothetical protein; Provisional	NA|176aa|up_3|NC_006361.1_3093741_3094269_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|610aa|up_2|NC_006361.1_3094327_3096157_-	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|257aa|up_1|NC_006361.1_3096352_3097123_-	cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA)	NA|522aa|up_0|NC_006361.1_3097170_3098736_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|85aa|down_0|NC_006361.1_3100603_3100858_-	NA	NA|348aa|down_1|NC_006361.1_3100857_3101901_-	NA	NA|116aa|down_2|NC_006361.1_3102052_3102400_+	NA	NA|179aa|down_3|NC_006361.1_3102406_3102943_+	NA	NA|698aa|down_4|NC_006361.1_3102954_3105048_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|139aa|down_5|NC_006361.1_3105050_3105467_+	pfam10823, DUF2568, Protein of unknown function (DUF2568)	NA|188aa|down_6|NC_006361.1_3105544_3106108_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|294aa|down_7|NC_006361.1_3106208_3107090_+	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|46aa|down_8|NC_006361.1_3107166_3107304_-	NA	NA|289aa|down_9|NC_006361.1_3107721_3108588_-	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	11	3428643-3428758	11	CRISPRCasFinder	no	WYL	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CTGCGCTACCACCTCCGGCCGCTGACCCGCTCAGGCGGTG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|68aa|down_2|NC_006361.1_3430946_3431150_+	NA|184aa|up_9|NC_006361.1_3415586_3416138_+	smart00331, PP2C_SIG, Sigma factor PP2C-like phosphatases	NA|754aa|up_8|NC_006361.1_3416134_3418396_+	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|411aa|up_7|NC_006361.1_3418402_3419635_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|486aa|up_6|NC_006361.1_3419812_3421270_+	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD	NA|605aa|up_5|NC_006361.1_3421350_3423165_+	pfam12077, DUF3556, Transmembrane protein of unknown function (DUF3556)	NA|471aa|up_4|NC_006361.1_3423190_3424603_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|287aa|up_3|NC_006361.1_3424720_3425581_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|259aa|up_2|NC_006361.1_3425577_3426354_-	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family	NA|339aa|up_1|NC_006361.1_3426463_3427480_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|322aa|up_0|NC_006361.1_3427476_3428442_-	PRK09685, PRK09685, DNA-binding transcriptional activator FeaR; Provisional	WYL|317aa|down_0|NC_006361.1_3429327_3430278_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|180aa|down_1|NC_006361.1_3430380_3430920_+	pfam04978, DUF664, Protein of unknown function (DUF664)	NA|68aa|down_2|NC_006361.1_3430946_3431150_+	NA	NA|330aa|down_3|NC_006361.1_3431153_3432143_-	pfam11288, DUF3089, Protein of unknown function (DUF3089)	NA|257aa|down_4|NC_006361.1_3432293_3433064_-	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|277aa|down_5|NC_006361.1_3433083_3433914_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|466aa|down_6|NC_006361.1_3434095_3435493_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|261aa|down_7|NC_006361.1_3435576_3436359_+	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates	NA|330aa|down_8|NC_006361.1_3436355_3437345_+	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	NA|219aa|down_9|NC_006361.1_3437463_3438120_+	COG1802, GntR, Transcriptional regulators [Transcription]
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	12	4087374-4087483	12	CRISPRCasFinder	no		cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GCCTGAGCGCGGCGGCCTCCACGGCCACACTCC	33	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA|186aa|up_4|NC_006361.1_4081855_4082413_+,NA|337aa|down_0|NC_006361.1_4087509_4088520_-,NA|55aa|down_3|NC_006361.1_4090932_4091097_-,NA|134aa|down_4|NC_006361.1_4091093_4091495_-,NA|99aa|down_5|NC_006361.1_4091536_4091833_+,NA|184aa|down_6|NC_006361.1_4091832_4092384_+	NA|321aa|up_9|NC_006361.1_4076272_4077235_-	pfam04655, APH_6_hur, Aminoglycoside/hydroxyurea antibiotic resistance kinase	NA|225aa|up_8|NC_006361.1_4077262_4077937_+	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein	NA|863aa|up_7|NC_006361.1_4077941_4080530_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|208aa|up_6|NC_006361.1_4080647_4081271_-	TIGR03085, TIGR03085, TIGR03085 family protein	NA|123aa|up_5|NC_006361.1_4081415_4081784_+	pfam13827, DUF4189, Domain of unknown function (DUF4189)	NA|186aa|up_4|NC_006361.1_4081855_4082413_+	NA	NA|550aa|up_3|NC_006361.1_4082493_4084143_-	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|303aa|up_2|NC_006361.1_4084571_4085480_-	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|158aa|up_1|NC_006361.1_4085628_4086102_+	pfam05534, HicB, HicB family	NA|420aa|up_0|NC_006361.1_4086047_4087307_-	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_0|NC_006361.1_4087509_4088520_-	NA	NA|413aa|down_1|NC_006361.1_4088516_4089755_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|255aa|down_2|NC_006361.1_4089751_4090516_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|55aa|down_3|NC_006361.1_4090932_4091097_-	NA	NA|134aa|down_4|NC_006361.1_4091093_4091495_-	NA	NA|99aa|down_5|NC_006361.1_4091536_4091833_+	NA	NA|184aa|down_6|NC_006361.1_4091832_4092384_+	NA	NA|281aa|down_7|NC_006361.1_4092380_4093223_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|152aa|down_8|NC_006361.1_4093248_4093704_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|166aa|down_9|NC_006361.1_4093708_4094206_-	PRK00068, PRK00068, hypothetical protein; Validated
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	13	4459382-4460995	13,1,1	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GGGCTCATCCCCGCGTGCGCGGGGAGCAC,GGGCTCATCCCCGCGTGCGCGGGGAGCAC,GGCTCATCCCCGCATGCGCGGGGAGCAC	29,29,28	2	2	4460263-4460294|4460269-4460301	NC_006361.1_727681-727712|NC_006361.1_727681-727713	I-E:I-E:I-E	26,26,25	26	Orphan	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|72aa|down_0|NC_006361.1_4461283_4461499_-	NA|263aa|up_9|NC_006361.1_4445727_4446516_-	pfam01981, PTH2, Peptidyl-tRNA hydrolase PTH2	NA|407aa|up_8|NC_006361.1_4446620_4447841_-	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|582aa|up_7|NC_006361.1_4447919_4449665_-	cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I	NA|266aa|up_6|NC_006361.1_4449936_4450734_+	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|356aa|up_5|NC_006361.1_4450779_4451847_+	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|297aa|up_4|NC_006361.1_4451957_4452848_+	cd03457, intradiol_dioxygenase_like, Intradiol dioxygenase supgroup	NA|321aa|up_3|NC_006361.1_4452891_4453854_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|391aa|up_2|NC_006361.1_4454161_4455334_-	pfam03403, PAF-AH_p_II, Platelet-activating factor acetylhydrolase, isoform II	NA|603aa|up_1|NC_006361.1_4455513_4457322_+	COG2936, COG2936, Predicted acyl esterases [General function prediction only]	NA|455aa|up_0|NC_006361.1_4457361_4458726_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|72aa|down_0|NC_006361.1_4461283_4461499_-	NA	NA|253aa|down_1|NC_006361.1_4461619_4462378_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|205aa|down_2|NC_006361.1_4462578_4463193_+	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|331aa|down_3|NC_006361.1_4463322_4464315_+	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|1103aa|down_4|NC_006361.1_4464380_4467689_-	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|168aa|down_5|NC_006361.1_4467754_4468258_-	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|78aa|down_6|NC_006361.1_4468303_4468537_-	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|189aa|down_7|NC_006361.1_4469017_4469584_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|207aa|down_8|NC_006361.1_4469734_4470355_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|275aa|down_9|NC_006361.1_4470359_4471184_+	PRK00768, nadE, ammonia-dependent NAD(+) synthetase
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	14	4584018-4584533	14,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	GGGCTCATCCCCGCACGCGCGGGGAGCAC,GGGCTCATCCCCGCACGCGCGGGGAGCAC,GGGCTCATCCCCGCACGCGCGGGGAGCAC	29,29,29	2	2	4584290-4584321|4584291-4584322	NC_006363.1_71761-71792|NC_006363.1_71761-71792	I-E:I-E:I-E	8,8,8	8	TypeI-E	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA|451aa|up_5|NC_006361.1_4574535_4575888_-,NA|678aa|up_2|NC_006361.1_4580177_4582211_-,NA|142aa|down_7|NC_006361.1_4593934_4594360_+,NA|131aa|down_8|NC_006361.1_4594505_4594898_-	NA|221aa|up_9|NC_006361.1_4569131_4569794_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|651aa|up_8|NC_006361.1_4569807_4571760_-	COG4867, COG4867, Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]	NA|466aa|up_7|NC_006361.1_4571756_4573154_-	COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism]	NA|315aa|up_6|NC_006361.1_4573351_4574296_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|451aa|up_5|NC_006361.1_4574535_4575888_-	NA	NA|139aa|up_4|NC_006361.1_4575953_4576370_-	COG4460, COG4460, Uncharacterized protein conserved in bacteria [Function unknown]	NA|727aa|up_3|NC_006361.1_4576672_4578853_+	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|678aa|up_2|NC_006361.1_4580177_4582211_-	NA	NA|292aa|up_1|NC_006361.1_4582207_4583083_-	cd09008, MTAN, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidases	NA|239aa|up_0|NC_006361.1_4583197_4583914_+	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]	cas2|126aa|down_0|NC_006361.1_4584573_4584951_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas6e|225aa|down_1|NC_006361.1_4585887_4586562_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|236aa|down_2|NC_006361.1_4586561_4587269_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|389aa|down_3|NC_006361.1_4587265_4588432_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|217aa|down_4|NC_006361.1_4588428_4589079_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|553aa|down_5|NC_006361.1_4589050_4590709_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|915aa|down_6|NC_006361.1_4590705_4593450_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|142aa|down_7|NC_006361.1_4593934_4594360_+	NA	NA|131aa|down_8|NC_006361.1_4594505_4594898_-	NA	NA|520aa|down_9|NC_006361.1_4594932_4596492_+	TIGR02677, conserved_hypothetical_protein, TIGR02677 family protein
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	15	4873661-4873765	15	CRISPRCasFinder	no		cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CTCCGGCCGCTGACCCGCTCAGGCGGT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|133aa|down_5|NC_006361.1_4879090_4879489_+	NA|250aa|up_9|NC_006361.1_4860821_4861571_-	PRK07774, PRK07774, SDR family oxidoreductase	NA|490aa|up_8|NC_006361.1_4861607_4863077_-	TIGR04284, aldehyde_dehydrogenase, aldehyde dehydrogenase, Rv0768 family	NA|531aa|up_7|NC_006361.1_4863304_4864897_+	PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed	NA|162aa|up_6|NC_006361.1_4864915_4865401_+	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|549aa|up_5|NC_006361.1_4865405_4867052_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|575aa|up_4|NC_006361.1_4867055_4868780_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|568aa|up_3|NC_006361.1_4868912_4870616_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|257aa|up_2|NC_006361.1_4870790_4871561_+	PRK01060, PRK01060, endonuclease IV; Provisional	NA|317aa|up_1|NC_006361.1_4871822_4872773_+	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|276aa|up_0|NC_006361.1_4872757_4873585_-	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|168aa|down_0|NC_006361.1_4874357_4874861_+	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|377aa|down_1|NC_006361.1_4874919_4876050_-	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit	NA|391aa|down_2|NC_006361.1_4876059_4877232_-	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit	NA|237aa|down_3|NC_006361.1_4877465_4878176_+	PRK10811, rne, ribonuclease E; Reviewed	NA|246aa|down_4|NC_006361.1_4878287_4879025_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|133aa|down_5|NC_006361.1_4879090_4879489_+	NA	NA|462aa|down_6|NC_006361.1_4879481_4880867_+	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|280aa|down_7|NC_006361.1_4880863_4881703_+	pfam14011, ESX-1_EspG, EspG family	NA|207aa|down_8|NC_006361.1_4881707_4882328_-	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]	NA|285aa|down_9|NC_006361.1_4882341_4883196_-	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	16	5289651-5290349	16,3,3	CRISPRCasFinder,PILER-CR,CRT	no		cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GTGCTCCCCGCGCACGCGGGGATGAGCC,GCTCCCCGCGCACGCGGGGATGAGCC,GCTCCCCGCGCACGCGGGGATGAGCC	28,26,26	1	1	5289679-5289711	NC_006361.1_5288137-5288169	I-E:I-E:I-E	11,11,11	11	Orphan	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA|176aa|up_7|NC_006361.1_5240373_5240901_+,NA|51aa|up_5|NC_006361.1_5242501_5242654_-,NA	NA|348aa|up_9|NC_006361.1_5238469_5239513_+	pfam04261, Dyp_perox, Dyp-type peroxidase family	NA|267aa|up_8|NC_006361.1_5239509_5240310_+	pfam04454, Linocin_M18, Encapsulating protein for peroxidase	NA|176aa|up_7|NC_006361.1_5240373_5240901_+	NA	NA|492aa|up_6|NC_006361.1_5240998_5242474_+	pfam02342, TerD, TerD domain	NA|51aa|up_5|NC_006361.1_5242501_5242654_-	NA	NA|205aa|up_4|NC_006361.1_5242759_5243374_-	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain	NA|186aa|up_3|NC_006361.1_5243443_5244001_+	cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs	NA|202aa|up_2|NC_006361.1_5244051_5244657_+	smart00746, TRASH, metallochaperone-like domain	NA|14510aa|up_1|NC_006361.1_5244713_5288243_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|252aa|up_0|NC_006361.1_5288617_5289373_-	COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism]	NA|203aa|down_0|NC_006361.1_5290508_5291117_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|532aa|down_1|NC_006361.1_5291256_5292852_+	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|696aa|down_2|NC_006361.1_5292860_5294948_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|387aa|down_3|NC_006361.1_5294944_5296105_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|168aa|down_4|NC_006361.1_5296101_5296605_+	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes	NA|275aa|down_5|NC_006361.1_5296601_5297426_+	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|649aa|down_6|NC_006361.1_5297450_5299397_+	PRK03584, PRK03584, acetoacetate--CoA ligase	NA|235aa|down_7|NC_006361.1_5299430_5300135_-	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|417aa|down_8|NC_006361.1_5300293_5301544_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|418aa|down_9|NC_006361.1_5301711_5302965_+	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_000009805.1_ASM980v1	NC_006361	Nocardia farcinica IFM 10152, complete genome	17	5423200-5423405	17	CRISPRCasFinder	no	WYL	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	GGCCCGAGCCGGGGCGCCCTCCGTGGTCACACTGCGCTGCCGCCTCCGGG	50	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas14j,c2c9_V-U4,DEDDh,WYL,cas4,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|144aa|down_5|NC_006361.1_5427390_5427822_+	NA|177aa|up_9|NC_006361.1_5413879_5414410_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|535aa|up_8|NC_006361.1_5414839_5416444_+	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|238aa|up_7|NC_006361.1_5416524_5417238_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|145aa|up_6|NC_006361.1_5417307_5417742_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|274aa|up_5|NC_006361.1_5417855_5418677_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|134aa|up_4|NC_006361.1_5418774_5419176_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|357aa|up_3|NC_006361.1_5419510_5420581_-	PRK13693, PRK13693, (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional	NA|57aa|up_2|NC_006361.1_5420729_5420900_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|164aa|up_1|NC_006361.1_5421724_5422216_+	pfam04461, DUF520, Protein of unknown function (DUF520)	NA|296aa|up_0|NC_006361.1_5422206_5423094_-	PRK03072, PRK03072, heat shock protein HtpX; Provisional	NA|336aa|down_0|NC_006361.1_5423496_5424504_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|418aa|down_1|NC_006361.1_5424634_5425888_+	TIGR02032, Uncharacterized_protein_MJ1520, geranylgeranyl reductase family	NA|151aa|down_2|NC_006361.1_5425913_5426366_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|146aa|down_3|NC_006361.1_5426375_5426813_+	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|168aa|down_4|NC_006361.1_5426823_5427327_-	pfam10698, DUF2505, Protein of unknown function (DUF2505)	NA|144aa|down_5|NC_006361.1_5427390_5427822_+	NA	NA|381aa|down_6|NC_006361.1_5427913_5429056_+	cd03814, GT4-like, glycosyltransferase family 4 proteins	NA|238aa|down_7|NC_006361.1_5429101_5429815_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|1392aa|down_8|NC_006361.1_5429915_5434091_+	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	NA|193aa|down_9|NC_006361.1_5434199_5434778_-	TIGR03086, TIGR03086, TIGR03086 family protein
