The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_000911	Synechocystis sp. PCC 6803, complete genome	3573470	2205773	2251496	3573470	transposase,protease	Mycobacterium_phage(28.57%)	45	NA	NA
WP_010873190.1|2205773_2206451_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	G3M9Z8	Bacillus_virus	32.6	2.3e-22
WP_010873191.1|2206550_2207159_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	53.8	3.5e-46
WP_010873192.1|2207369_2208695_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010873193.1|2208777_2209758_-	S-methyl-5'-thioadenosine phosphorylase	NA	NA	NA	NA	NA
WP_010873194.1|2209702_2209939_-	DUF3134 domain-containing protein	NA	NA	NA	NA	NA
WP_014407125.1|2210005_2210194_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_010873198.1|2211282_2212479_+	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain	NA	NA	NA	NA	NA
WP_010873199.1|2212504_2213707_+	serine hydrolase	NA	X2KYU1	Mycobacterium_phage	27.8	5.7e-16
WP_010873200.1|2213706_2214735_+	cobalamin biosynthesis protein	NA	NA	NA	NA	NA
WP_102014011.1|2214684_2215804_-	peptide chain release factor 2	NA	B5LLF2	Mycobacterium_phage	53.6	1.0e-06
WP_041425827.1|2216162_2216396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010873202.1|2216475_2219175_-	chloride channel protein	NA	NA	NA	NA	NA
WP_020862235.1|2219289_2219793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010873204.1|2219740_2220961_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010873205.1|2221046_2221631_+	type II secretion system protein	NA	NA	NA	NA	NA
WP_010873206.1|2221647_2222199_+	type II secretion system protein	NA	NA	NA	NA	NA
WP_010873207.1|2222315_2222876_+	type II secretion system protein	NA	NA	NA	NA	NA
WP_010873208.1|2222897_2223815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010873209.1|2223872_2224568_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010873210.1|2224788_2225112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010873211.1|2225277_2225709_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010873212.1|2225765_2226530_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_010873213.1|2226618_2227404_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_010873214.1|2227828_2228377_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	54.5	8.5e-52
WP_010873215.1|2228444_2230328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010873216.1|2230486_2231515_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA	NA
WP_010873217.1|2231638_2233036_+	MFS transporter	NA	NA	NA	NA	NA
WP_014407127.1|2233036_2233834_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010873219.1|2233808_2234273_-	DUF3750 domain-containing protein	NA	NA	NA	NA	NA
WP_010873220.1|2234303_2234753_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	46.6	1.2e-27
WP_010873221.1|2235071_2235458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010873222.1|2236418_2237054_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_010873223.1|2237133_2238189_+	S-methyl-5-thioribose-1-phosphate isomerase	NA	NA	NA	NA	NA
WP_010873224.1|2238276_2238954_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010873225.1|2239238_2241248_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010873226.1|2241339_2242788_+	collagen-like protein	NA	NA	NA	NA	NA
WP_071822658.1|2242873_2243137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020862227.1|2243249_2243723_-	TspO/MBR family protein	NA	NA	NA	NA	NA
WP_010873229.1|2243850_2245368_+	circadian clock protein KaiC	NA	NA	NA	NA	NA
WP_010873230.1|2245406_2245583_+	PCP reductase family protein	NA	NA	NA	NA	NA
WP_010873231.1|2245635_2246631_+	glycosyltransferase	NA	F1C5B0	Cronobacter_phage	44.2	2.5e-62
WP_010873232.1|2246866_2248483_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010873233.1|2248577_2250176_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA	NA
WP_010873234.1|2250240_2250474_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010873235.1|2250710_2251496_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
>prophage 2
NC_000911	Synechocystis sp. PCC 6803, complete genome	3573470	3038374	3097173	3573470	transposase,protease	Roseobacter_phage(16.67%)	56	NA	NA
WP_010873913.1|3038374_3039166_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010873914.1|3039857_3040721_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_020862010.1|3040790_3040955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041426059.1|3041013_3041415_+	endoribonuclease L-PSP	NA	NA	NA	NA	NA
WP_010873916.1|3041493_3042408_+	class D beta-lactamase	NA	NA	NA	NA	NA
WP_010873917.1|3042486_3042684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010873918.1|3042788_3043613_+	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_048908439.1|3044054_3044429_-	PIN domain-containing protein	NA	NA	NA	NA	NA
WP_020862005.1|3044418_3044655_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_010873920.1|3044832_3045852_+	bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase	NA	A0A1B0V161	Roseobacter_phage	41.4	7.5e-70
WP_010873921.1|3045876_3047265_+	nicotinate phosphoribosyltransferase	NA	A0A1B0V392	Roseobacter_phage	51.0	1.4e-122
WP_010873922.1|3047713_3048271_+	HPP family protein	NA	NA	NA	NA	NA
WP_010873923.1|3048284_3048635_+	UmuC protein	NA	A0A218MNF2	uncultured_virus	58.7	4.0e-15
WP_010873924.1|3048901_3050266_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_010873925.1|3050262_3050967_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_020862002.1|3051088_3051733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010873927.1|3051771_3054936_+	CusA/CzcA family heavy metal efflux RND transporter	NA	S5VTK5	Leptospira_phage	25.2	5.0e-80
WP_010873928.1|3054871_3055699_+	glycoside hydrolase family protein	NA	H9C1A7	Pectobacterium_phage	27.0	2.4e-05
WP_010873929.1|3055813_3057151_+	MFS transporter	NA	NA	NA	NA	NA
WP_010873930.1|3057216_3058329_-	precorrin-8X methylmutase	NA	NA	NA	NA	NA
WP_010873931.1|3058410_3060339_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.0	3.5e-124
WP_010873932.1|3060468_3060795_-	YnfA family protein	NA	A0A2H4JF35	uncultured_Caudovirales_phage	38.2	8.7e-12
WP_010873933.1|3060806_3061205_-	Zn(II)-sensing metalloregulatory transcriptional repressor ZiaR	NA	NA	NA	NA	NA
WP_010873934.1|3061356_3063522_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.5	1.5e-112
WP_010873935.1|3063548_3064925_-	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_010873936.1|3064911_3065610_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010873937.1|3065616_3066207_-	DUF305 domain-containing protein	NA	NA	NA	NA	NA
WP_102014014.1|3066395_3067176_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_080504064.1|3067171_3067345_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_010873940.1|3067357_3067648_-	MSMEG_0570 family nitrogen starvation response protein	NA	NA	NA	NA	NA
WP_010873941.1|3067651_3068620_-	sll0787 family AIR synthase-like protein	NA	NA	NA	NA	NA
WP_010873942.1|3068629_3069208_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010873943.1|3069161_3070250_-	MSMEG_0568 family radical SAM protein	NA	NA	NA	NA	NA
WP_014407149.1|3070280_3071306_-	Nit6803 family nitriliase	NA	NA	NA	NA	NA
WP_010873945.1|3071458_3071941_-	MSMEG_0572 family nitrogen starvation response protein	NA	NA	NA	NA	NA
WP_010873946.1|3072405_3073656_+	MSMEG_0569 family flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010873947.1|3073628_3074738_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_010873948.1|3075109_3075577_-	DUF1348 family protein	NA	NA	NA	NA	NA
WP_010873949.1|3075545_3075848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010873950.1|3075895_3078550_-	PAS domain S-box protein	NA	G3MA91	Bacillus_virus	37.6	2.5e-16
WP_010873951.1|3078837_3081210_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	36.4	6.8e-29
WP_010873952.1|3081263_3082181_-	D-alanyl-D-alanine carboxypeptidase family protein	NA	NA	NA	NA	NA
WP_010873953.1|3082150_3083668_-	protein kinase	NA	M1HRT5	Paramecium_bursaria_Chlorella_virus	24.7	5.7e-13
WP_010873954.1|3083745_3084123_-	DUF4189 domain-containing protein	NA	NA	NA	NA	NA
WP_014407150.1|3084420_3084585_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA	NA
WP_010873956.1|3084676_3088435_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010873957.1|3088418_3088883_+	CYTH domain-containing protein	NA	A0A2I7SAN4	Vibrio_phage	37.4	3.0e-18
WP_010873958.1|3089092_3089515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010873959.1|3089655_3091014_+	APC family permease	NA	NA	NA	NA	NA
WP_010873960.1|3091243_3091657_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010873961.1|3091763_3093017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010873962.1|3093407_3093845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010873213.1|3093907_3094693_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_010873963.1|3094772_3094970_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_010873964.1|3095043_3095586_-	DUF4334 domain-containing protein	NA	NA	NA	NA	NA
WP_010873213.1|3096387_3097173_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NC_000911	Synechocystis sp. PCC 6803, complete genome	3573470	3226339	3235186	3573470		Paramecium_bursaria_Chlorella_virus(16.67%)	11	NA	NA
WP_010874071.1|3226339_3227266_-	ornithine carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	27.7	1.1e-19
WP_010874072.1|3227378_3227909_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	2.8e-20
WP_010874073.1|3228009_3228375_+	single-stranded DNA-binding protein	NA	A0A291LA01	Bordetella_phage	40.0	1.1e-20
WP_041425863.1|3228462_3228693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010874074.1|3228711_3229590_+	4-hydroxybenzoate solanesyltransferase	NA	NA	NA	NA	NA
WP_010872429.1|3229779_3230838_+	photosystem II D2 protein (photosystem q(a) protein)	NA	A0A0M6VW09	Synechococcus_phage	88.7	1.7e-189
WP_010874075.1|3230962_3231550_+	ParA family protein	NA	A0A0N7E4H5	Mycobacterium_phage	34.4	1.4e-12
WP_010874076.1|3231568_3232879_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_010874077.1|3232901_3233180_+	TMEM165/GDT1 family protein	NA	NA	NA	NA	NA
WP_010874078.1|3233176_3233809_-	ATP phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010874079.1|3233815_3235186_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	32.2	3.8e-32
>prophage 1
NC_005230	Synechocystis sp. PCC 6803 plasmid pSYSA, complete sequence	103307	0	2965	103307	transposase,integrase	Acinetobacter_phage(100.0%)	4	292:305	12759:12772
292:305	attL	ATGGAAATACTTTT	NA	NA	NA	NA
WP_011153671.1|705_1287_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
WP_011153672.1|1398_1827_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_011153673.1|1798_2032_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_011153674.1|2398_2965_+|integrase	site-specific integrase	integrase	A0A0P0IKP2	Acinetobacter_phage	25.9	3.9e-07
12759:12772	attR	AAAAGTATTTCCAT	NA	NA	NA	NA
>prophage 2
NC_005230	Synechocystis sp. PCC 6803 plasmid pSYSA, complete sequence	103307	26351	28630	103307		Cyanophage(100.0%)	2	NA	NA
WP_011153697.1|26351_27608_-	hypothetical protein	NA	H6WG29	Cyanophage	31.3	2.5e-51
WP_011153698.1|27604_28630_-	MoxR family ATPase	NA	H6WG28	Cyanophage	46.7	5.1e-82
>prophage 3
NC_005230	Synechocystis sp. PCC 6803 plasmid pSYSA, complete sequence	103307	32646	38712	103307		Brucella_phage(50.0%)	8	NA	NA
WP_011153706.1|32646_35523_+	DUF3854 domain-containing protein	NA	A0A1L2BX29	Bacteriophage	24.3	5.1e-23
WP_011153707.1|35890_36178_-	putative addiction module antidote protein	NA	A0A141GEX5	Brucella_phage	56.3	1.3e-19
WP_011153708.1|36188_36479_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	56.2	1.9e-26
WP_011153709.1|36596_36848_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011153710.1|36838_37201_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_011153711.1|37266_37521_-	DUF1819 family protein	NA	NA	NA	NA	NA
WP_011153712.1|37553_38138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011153713.1|38130_38712_-	hypothetical protein	NA	A0A0N7E4H5	Mycobacterium_phage	31.7	6.7e-07
>prophage 4
NC_005230	Synechocystis sp. PCC 6803 plasmid pSYSA, complete sequence	103307	41844	42492	103307		Klebsiella_phage(100.0%)	1	NA	NA
WP_011153718.1|41844_42492_+	recombinase family protein	NA	A0A286S1P7	Klebsiella_phage	48.7	5.3e-37
>prophage 5
NC_005230	Synechocystis sp. PCC 6803 plasmid pSYSA, complete sequence	103307	47528	48242	103307		Microcystis_virus(100.0%)	1	NA	NA
WP_011153726.1|47528_48242_+	HNH endonuclease	NA	A0A7G5	Microcystis_virus	33.5	2.0e-13
>prophage 6
NC_005230	Synechocystis sp. PCC 6803 plasmid pSYSA, complete sequence	103307	72877	73459	103307		Salmonella_phage(100.0%)	1	NA	NA
WP_011153746.1|72877_73459_-	HD domain-containing protein	NA	J9Q7H7	Salmonella_phage	34.8	6.7e-07
>prophage 7
NC_005230	Synechocystis sp. PCC 6803 plasmid pSYSA, complete sequence	103307	93672	95344	103307		Bacillus_phage(50.0%)	3	NA	NA
WP_011153763.1|93672_94188_+	AAA family ATPase	NA	A0A218KC56	Bacillus_phage	33.3	1.6e-12
WP_011153764.1|94197_94611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011153765.1|94717_95344_+	alpha-ketoglutarate-dependent dioxygenase AlkB	NA	A0A1V0SJ11	Klosneuvirus	39.6	7.7e-17
>prophage 8
NC_005230	Synechocystis sp. PCC 6803 plasmid pSYSA, complete sequence	103307	100245	100704	103307		Bacillus_phage(100.0%)	1	NA	NA
WP_158299058.1|100245_100704_-	ATP-binding domain-containing protein	NA	U5J9B0	Bacillus_phage	33.7	1.1e-15
>prophage 1
NC_005232	Synechocystis sp. PCC 6803 plasmid pSYSX, complete sequence	106004	31353	42311	106004		uncultured_Mediterranean_phage(14.29%)	12	NA	NA
WP_011153851.1|31353_31572_+	DNA cytosine methyltransferase	NA	K7XRH7	uncultured_Mediterranean_phage	54.8	1.1e-05
WP_143705305.1|31519_31801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011153853.1|32128_32545_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_011153854.1|32659_32893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011153855.1|32889_33495_-	ParA family protein	NA	A0A2P1N2C6	Mycobacterium_phage	31.2	6.1e-11
WP_011153856.1|33888_34311_+	arsenate reductase family protein	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	54.0	8.0e-34
WP_071822683.1|34374_34668_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_011153858.1|34783_35374_+	DUF305 domain-containing protein	NA	A0A218MND9	uncultured_virus	35.2	1.4e-12
WP_011153859.1|35380_36079_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.2	1.6e-26
WP_011153860.1|36065_37418_+	GHKL domain-containing protein	NA	Q6XLV6	Feldmannia_irregularis_virus	25.0	5.4e-07
WP_011153861.1|37481_39119_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_011153862.1|39170_42311_+	CusA/CzcA family heavy metal efflux RND transporter	NA	S5VTK5	Leptospira_phage	24.8	5.2e-77
