assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000009685.1_ASM968v1	NC_003366	Clostridium perfringens str. 13, complete genome	1	334955-335043	1	CRISPRCasFinder	no		csx1,cas14j,DEDDh,cas2,csa3,cas3,DinG	Orphan	AGTTTTATATAAATCAATATAAA	23	0	0	NA	NA	NA	1	1	Orphan	csx1,cas14j,DEDDh,cas2,csa3,cas3,DinG	NA|108aa|up_7|NC_003366.1_328756_329080_+,NA|71aa|up_2|NC_003366.1_332711_332924_+,NA|99aa|up_0|NC_003366.1_334576_334873_-,NA	NA|83aa|up_9|NC_003366.1_327068_327317_+	pfam07875, Coat_F, Coat F domain	NA|245aa|up_8|NC_003366.1_327852_328587_-	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|108aa|up_7|NC_003366.1_328756_329080_+	NA	NA|70aa|up_6|NC_003366.1_329113_329323_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|169aa|up_5|NC_003366.1_329697_330204_+	COG1329, COG1329, Transcriptional regulators, similar to M	NA|379aa|up_4|NC_003366.1_330591_331728_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|208aa|up_3|NC_003366.1_331724_332348_+	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]	NA|71aa|up_2|NC_003366.1_332711_332924_+	NA	NA|437aa|up_1|NC_003366.1_333044_334355_-	pfam07613, DUF1576, Protein of unknown function (DUF1576)	NA|99aa|up_0|NC_003366.1_334576_334873_-	NA	NA|226aa|down_0|NC_003366.1_335080_335758_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|846aa|down_1|NC_003366.1_336094_338632_+	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain	NA|156aa|down_2|NC_003366.1_344671_345139_-	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of  thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides	NA|249aa|down_3|NC_003366.1_345778_346525_+	PRK00059, prsA, peptidylprolyl isomerase; Provisional	NA|271aa|down_4|NC_003366.1_346987_347800_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|391aa|down_5|NC_003366.1_347817_348990_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|428aa|down_6|NC_003366.1_349003_350287_+	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins	NA|412aa|down_7|NC_003366.1_350305_351541_+	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins	NA|394aa|down_8|NC_003366.1_351554_352736_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|478aa|down_9|NC_003366.1_352850_354284_+	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins
GCF_000009685.1_ASM968v1	NC_003366	Clostridium perfringens str. 13, complete genome	2	1111943-1112145	2	CRISPRCasFinder	no		csx1,cas14j,DEDDh,cas2,csa3,cas3,DinG	Orphan	TTTTAAGCAATATTTGTTTTTAGGT	25	0	0	NA	NA	NA	3	3	Orphan	csx1,cas14j,DEDDh,cas2,csa3,cas3,DinG	NA,NA|104aa|down_1|NC_003366.1_1113187_1113499_+,NA|241aa|down_7|NC_003366.1_1119813_1120536_+,NA|209aa|down_9|NC_003366.1_1122000_1122627_+	NA|493aa|up_9|NC_003366.1_1103886_1105365_+	TIGR02518, Acetaldehyde_dehydrogenase_acetylating, acetaldehyde dehydrogenase (acetylating)	NA|97aa|up_8|NC_003366.1_1105720_1106011_+	cd07059, BMC_PduA, 1,2-propanediol utilization protein A (PduA), Bacterial Micro-Compartment (BMC) domain	NA|259aa|up_7|NC_003366.1_1106088_1106865_+	COG4812, EutT, Ethanolamine utilization cobalamin adenosyltransferase [Amino acid transport and metabolism]	NA|212aa|up_6|NC_003366.1_1106874_1107510_+	PRK15070, PRK15070, phosphate propanoyltransferase	NA|253aa|up_5|NC_003366.1_1107715_1108474_+	TIGR02536, putative_ethanolamine_utilization_protein, ethanolamine utilization protein	NA|91aa|up_4|NC_003366.1_1108621_1108894_+	pfam03319, EutN_CcmL, Ethanolamine utilisation protein EutN/carboxysome	NA|185aa|up_3|NC_003366.1_1108895_1109450_+	TIGR02526, putative_ethanolamine_utilization_protein, PduT-like ethanolamine utilization protein	NA|366aa|up_2|NC_003366.1_1109500_1110598_+	PRK15086, PRK15086, ethanolamine utilization protein EutH; Provisional	NA|158aa|up_1|NC_003366.1_1110600_1111074_+	pfam06249, EutQ, Ethanolamine utilisation protein EutQ	NA|159aa|up_0|NC_003366.1_1111441_1111918_+	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|182aa|down_0|NC_003366.1_1112350_1112896_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|104aa|down_1|NC_003366.1_1113187_1113499_+	NA	NA|547aa|down_2|NC_003366.1_1113812_1115453_+	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal    transduction mechanisms]	NA|207aa|down_3|NC_003366.1_1115534_1116155_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|142aa|down_4|NC_003366.1_1116596_1117022_+	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase	NA|604aa|down_5|NC_003366.1_1117352_1119164_+	PRK08270, PRK08270, ribonucleoside triphosphate reductase	NA|153aa|down_6|NC_003366.1_1119160_1119619_+	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|241aa|down_7|NC_003366.1_1119813_1120536_+	NA	NA|181aa|down_8|NC_003366.1_1121178_1121721_+	cd02139, nitroreductase, nitroreductase family protein	NA|209aa|down_9|NC_003366.1_1122000_1122627_+	NA
GCF_000009685.1_ASM968v1	NC_003366	Clostridium perfringens str. 13, complete genome	3	1330215-1330324	3	CRISPRCasFinder	no		csx1,cas14j,DEDDh,cas2,csa3,cas3,DinG	Orphan	AAATAGTAATTTAGAATCTAATATAA	26	0	0	NA	NA	NA	1	1	Orphan	csx1,cas14j,DEDDh,cas2,csa3,cas3,DinG	NA|117aa|up_7|NC_003366.1_1319534_1319885_+,NA|102aa|up_5|NC_003366.1_1320547_1320853_+,NA|112aa|up_4|NC_003366.1_1321014_1321350_+,NA|81aa|down_0|NC_003366.1_1331701_1331944_+,NA|68aa|down_1|NC_003366.1_1332270_1332474_+,NA|265aa|down_3|NC_003366.1_1334195_1334990_-,NA|96aa|down_4|NC_003366.1_1335176_1335464_+,NA|170aa|down_5|NC_003366.1_1335991_1336501_+,NA|196aa|down_6|NC_003366.1_1336949_1337537_+,NA|111aa|down_7|NC_003366.1_1337650_1337983_+	NA|106aa|up_9|NC_003366.1_1318763_1319081_+	TIGR01563, hypothetical_protein_AGR_C_1752, phage head-tail adaptor, putative, SPP1 family	NA|148aa|up_8|NC_003366.1_1319081_1319525_+	TIGR01725, hypothetical_protein, phage protein, HK97 gp10 family	NA|117aa|up_7|NC_003366.1_1319534_1319885_+	NA	NA|200aa|up_6|NC_003366.1_1319900_1320500_+	TIGR01603, Uncharacterized_phage_related_protein, phage major tail protein, phi13 family	NA|102aa|up_5|NC_003366.1_1320547_1320853_+	NA	NA|112aa|up_4|NC_003366.1_1321014_1321350_+	NA	NA|934aa|up_3|NC_003366.1_1321367_1324169_+	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region	NA|232aa|up_2|NC_003366.1_1324149_1324845_+	COG4722, COG4722, Phage-related protein [Function unknown]	NA|984aa|up_1|NC_003366.1_1324848_1327800_+	TIGR01665, structural_protein, phage minor structural protein, N-terminal region	NA|625aa|up_0|NC_003366.1_1327848_1329723_+	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	NA|81aa|down_0|NC_003366.1_1331701_1331944_+	NA	NA|68aa|down_1|NC_003366.1_1332270_1332474_+	NA	NA|305aa|down_2|NC_003366.1_1332511_1333426_+	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls	NA|265aa|down_3|NC_003366.1_1334195_1334990_-	NA	NA|96aa|down_4|NC_003366.1_1335176_1335464_+	NA	NA|170aa|down_5|NC_003366.1_1335991_1336501_+	NA	NA|196aa|down_6|NC_003366.1_1336949_1337537_+	NA	NA|111aa|down_7|NC_003366.1_1337650_1337983_+	NA	NA|322aa|down_8|NC_003366.1_1338111_1339077_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|287aa|down_9|NC_003366.1_1339125_1339986_-	TIGR03125, citrate_citG, triphosphoribosyl-dephospho-CoA synthase CitG
GCF_000009685.1_ASM968v1	NC_003366	Clostridium perfringens str. 13, complete genome	4	2108499-2108611	4	CRISPRCasFinder	no		csx1,cas14j,DEDDh,cas2,csa3,cas3,DinG	Orphan	TTCTATTTAAATCTATTACTTTACATAA	28	0	0	NA	NA	NA	1	1	Orphan	csx1,cas14j,DEDDh,cas2,csa3,cas3,DinG	NA,NA|121aa|down_0|NC_003366.1_2108681_2109044_-,NA|116aa|down_2|NC_003366.1_2109885_2110233_-,NA|147aa|down_3|NC_003366.1_2110229_2110670_-,NA|204aa|down_4|NC_003366.1_2110629_2111241_-,NA|117aa|down_5|NC_003366.1_2111215_2111566_-,NA|97aa|down_6|NC_003366.1_2111612_2111903_-	NA|278aa|up_9|NC_003366.1_2101415_2102249_-	PRK14172, PRK14172, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|136aa|up_8|NC_003366.1_2102297_2102705_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|up_7|NC_003366.1_2102823_2103213_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|166aa|up_6|NC_003366.1_2103297_2103795_-	pfam12685, SpoIIIAH, SpoIIIAH-like protein	NA|202aa|up_5|NC_003366.1_2103820_2104426_-	TIGR02830, Stage_III_sporulation_protein_AG, stage III sporulation protein AG	NA|391aa|up_4|NC_003366.1_2105006_2106179_-	TIGR02829, Stage_III_sporulation_protein_AE, stage III sporulation protein AE	NA|129aa|up_3|NC_003366.1_2106189_2106576_-	TIGR02849, Stage_III_sporulation_protein_AD, stage III sporulation protein AD	NA|66aa|up_2|NC_003366.1_2106663_2106861_-	TIGR02848, Stage_III_sporulation_protein_AC, stage III sporulation protein AC	NA|172aa|up_1|NC_003366.1_2106936_2107452_-	TIGR02833, Stage_III_sporulation_protein_AB, stage III sporulation protein AB	NA|295aa|up_0|NC_003366.1_2107598_2108483_-	TIGR02858, Stage_III_sporulation_protein_AA, stage III sporulation protein AA	NA|121aa|down_0|NC_003366.1_2108681_2109044_-	NA	NA|186aa|down_1|NC_003366.1_2109157_2109715_-	PRK00529, PRK00529, elongation factor P; Validated	NA|116aa|down_2|NC_003366.1_2109885_2110233_-	NA	NA|147aa|down_3|NC_003366.1_2110229_2110670_-	NA	NA|204aa|down_4|NC_003366.1_2110629_2111241_-	NA	NA|117aa|down_5|NC_003366.1_2111215_2111566_-	NA	NA|97aa|down_6|NC_003366.1_2111612_2111903_-	NA	NA|171aa|down_7|NC_003366.1_2112037_2112550_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|143aa|down_8|NC_003366.1_2112569_2112998_-	PRK10557, PRK10557, prepilin peptidase-dependent protein	NA|340aa|down_9|NC_003366.1_2112990_2114010_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_000009685.1_ASM968v1	NC_003042	Clostridium perfringens str. 13 plasmid pCP13, complete sequence	1	54001-54094	1	CRISPRCasFinder	no			Orphan	CTGTCATTTTGACTGTTCTCAGAAA	25	0	0	NA	NA	NA	1	1	Orphan	csx1,cas14j,DEDDh,cas2,csa3,cas3,DinG	NA|79aa|up_9|NC_003042.1_43354_43591_-,NA|65aa|up_8|NC_003042.1_43654_43849_-,NA|149aa|up_0|NC_003042.1_53113_53560_-,NA	NA|79aa|up_9|NC_003042.1_43354_43591_-	NA	NA|65aa|up_8|NC_003042.1_43654_43849_-	NA	NA|151aa|up_7|NC_003042.1_43841_44294_-	TIGR02875, stage_0_sporulation_protein_A, sporulation transcription factor Spo0A	NA|199aa|up_6|NC_003042.1_44412_45009_-	cd06166, Sortase_D_2, Sortase domain found in subfamily 2 of the class D family of sortases	NA|1369aa|up_5|NC_003042.1_45254_49361_-	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|117aa|up_4|NC_003042.1_49505_49856_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|358aa|up_3|NC_003042.1_49979_51053_-	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|162aa|up_2|NC_003042.1_51098_51584_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|368aa|up_1|NC_003042.1_51896_53000_+	PRK00215, PRK00215, transcriptional repressor LexA	NA|149aa|up_0|NC_003042.1_53113_53560_-	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
