bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	1.1|188414|33|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	100.00	33	0	0	1	33	1425154	1425186	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	1e-09	53.9	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1425154-1425186	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	1.1|188414|33|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	93.94	33	2	0	1	33	847890	847858	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	1e-07	47.5	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	847858-847890	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	1.1|188414|33|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	93.94	33	2	0	1	33	847949	847917	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	1e-07	47.5	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	847917-847949	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	1.1|188414|33|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	93.94	33	2	0	1	33	1513534	1513502	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	1e-07	47.5	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1513502-1513534	ATTGGGAATACAATTTCTCTTTGTTGGGGTCCA	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	3.1|842324|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	100.00	31	0	0	1	31	311614	311584	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	8e-09	50.7	1.0	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	311584-311614	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	0
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	3.1|842324|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	96.77	31	1	0	1	31	311559	311529	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	7e-08	47.5	1.0	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	311529-311559	GGTAATGCAAGTTGGCGGGGCCCCAACACAG	1
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	3.1|842324|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	96.77	31	1	0	1	31	1729477	1729507	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	7e-08	47.5	1.0	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	1729477-1729507	CTGTGTTGGGGCCCCGCCAACTTCCATTGCC	1
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	4.1|905808|34|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	97.06	34	1	0	1	34	1425186	1425153	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	4e-09	52.3	1.0	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT	1425153-1425186	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	5.1|1695021|33|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	96.97	33	1	0	1	33	847858	847890	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	1e-08	50.7	1.0	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA	847858-847890	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	1
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	5.1|1695021|33|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	96.97	33	1	0	1	33	847917	847949	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	1e-08	50.7	1.0	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA	847917-847949	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	1
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	5.1|1695021|33|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	96.97	33	1	0	1	33	1425186	1425154	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	1e-08	50.7	1.0	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA	1425154-1425186	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	6.1|2131069|34|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	100.00	34	0	0	1	34	842299	842332	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	5e-10	55.5	1.0	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	842299-842332	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	0
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	6.1|2131069|34|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	100.00	34	0	0	1	34	1213445	1213412	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	5e-10	55.5	1.0	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	1213412-1213445	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	0
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	6.1|2131069|34|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	97.06	34	1	0	1	34	1823265	1823232	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	4e-09	52.3	1.0	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	1823232-1823265	CCAACACAAAGAATTTCGAAAAGAAATTCTACAA	1
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	6.1|2131069|34|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	94.12	34	2	0	1	34	1429527	1429560	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	4e-08	49.1	1.0	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	1429527-1429560	TTGTGGAATTTCTTATCGAAATTCTCTGTGTTGG	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	6.1|2131069|34|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	94.12	34	2	0	1	34	2837819	2837852	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	4e-08	49.1	1.0	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	2837819-2837852	TTGTAGAATTTCTTTTCGAAATTCTTTTTGTTGG	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	96.77	31	1	0	1	31	855102	855132	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	7e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	855102-855132	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	96.77	31	1	0	1	31	855158	855188	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	7e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	855158-855188	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	96.77	31	1	0	1	31	855214	855244	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	7e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	855214-855244	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	96.77	31	1	0	1	31	855270	855300	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	7e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	855270-855300	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	93.55	31	2	0	1	31	89901	89931	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	89901-89931	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	93.55	31	2	0	1	31	387943	387913	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	387913-387943	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	93.55	31	2	0	1	31	676027	675997	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	675997-676027	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	93.55	31	2	0	1	31	855326	855356	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	855326-855356	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	93.55	31	2	0	1	31	906120	906150	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	906120-906150	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	93.55	31	2	0	1	31	1116421	1116451	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1116421-1116451	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	93.55	31	2	0	1	31	1219043	1219013	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1219013-1219043	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	93.55	31	2	0	1	31	1425142	1425112	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1425112-1425142	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	93.55	31	2	0	1	31	1513546	1513576	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1513546-1513576	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	93.55	31	2	0	1	31	1709689	1709659	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1709659-1709689	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	93.55	31	2	0	1	31	2028536	2028566	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2028536-2028566	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	93.55	31	2	0	1	31	2385152	2385182	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2385152-2385182	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10.1|2395953|31|NC_002758|CRISPRCasFinder	NC_002758.2	Staphylococcus aureus subsp. aureus Mu50, complete genome	93.55	31	2	0	1	31	2562186	2562216	188388-188472|428170-428271|842300-842378|905784-905865|1694995-1695079|2131045-2131126|2146687-2146775|2275848-2275928|2288169-2288254|2395928-2396008	6e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2562186-2562216	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
