assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000009665.1_ASM966v1	NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	1	188388-188472	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	4	188414-188446|188414-188446|188414-188446|188414-188446	NC_002758.2_1425154-1425186|NC_002758.2_847890-847858|NC_002758.2_847949-847917|NC_002758.2_1513534-1513502	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|402aa|up_9|NC_002758.2_177533_178739_+,NA|68aa|down_0|NC_002758.2_188533_188737_-	NA|402aa|up_9|NC_002758.2_177533_178739_+	NA	NA|402aa|up_8|NC_002758.2_178739_179945_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NC_002758.2_179955_180513_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NC_002758.2_180512_181400_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NC_002758.2_181453_182716_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NC_002758.2_182792_183938_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NC_002758.2_184002_184329_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NC_002758.2_184335_184719_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NC_002758.2_185145_186633_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NC_002758.2_187279_188239_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NC_002758.2_188533_188737_-	NA	NA|171aa|down_1|NC_002758.2_188915_189428_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NC_002758.2_189769_190510_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|NC_002758.2_190523_191495_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NC_002758.2_191491_192253_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NC_002758.2_192265_193297_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NC_002758.2_193513_193873_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NC_002758.2_194046_195072_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NC_002758.2_195457_196708_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NC_002758.2_197154_204330_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_000009665.1_ASM966v1	NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	2	428170-428271	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_9|NC_002758.2_418209_418419_-,NA|128aa|up_7|NC_002758.2_419243_419627_-,NA|33aa|up_1|NC_002758.2_425874_425973_+,NA|221aa|down_1|NC_002758.2_429361_430024_-	NA|70aa|up_9|NC_002758.2_418209_418419_-	NA	NA|194aa|up_8|NC_002758.2_418596_419178_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NC_002758.2_419243_419627_-	NA	NA|209aa|up_6|NC_002758.2_419896_420523_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|NC_002758.2_420966_422490_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NC_002758.2_422505_423075_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NC_002758.2_423566_424322_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NC_002758.2_424401_425790_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|NC_002758.2_425874_425973_+	NA	NA|440aa|up_0|NC_002758.2_426636_427956_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|319aa|down_0|NC_002758.2_428287_429244_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NC_002758.2_429361_430024_-	NA	NA|136aa|down_2|NC_002758.2_430166_430574_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_002758.2_431086_431665_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_002758.2_431664_432933_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_002758.2_432970_434437_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_002758.2_434461_436003_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|NC_002758.2_436070_437264_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|NC_002758.2_437290_437491_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|NC_002758.2_437988_438219_-	pfam12645, HTH_16, Helix-turn-helix domain
GCF_000009665.1_ASM966v1	NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	3	842300-842378	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	842324-842354|842324-842354|842324-842354	NC_002758.2_311614-311584|NC_002758.2_311559-311529|NC_002758.2_1729477-1729507	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NC_002758.2_833176_833281_+,NA|36aa|up_5|NC_002758.2_834713_834821_+,NA	NA|191aa|up_9|NC_002758.2_829617_830190_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NC_002758.2_830603_833135_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NC_002758.2_833176_833281_+	NA	NA|370aa|up_6|NC_002758.2_833449_834560_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NC_002758.2_834713_834821_+	NA	NA|280aa|up_4|NC_002758.2_834968_835808_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NC_002758.2_835981_836632_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NC_002758.2_836628_836865_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NC_002758.2_837133_839119_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NC_002758.2_839126_841973_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NC_002758.2_842636_843569_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NC_002758.2_843574_844414_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NC_002758.2_844421_844907_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NC_002758.2_844914_846354_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NC_002758.2_846420_847356_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NC_002758.2_848300_849212_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NC_002758.2_849208_850204_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NC_002758.2_850314_851259_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NC_002758.2_851822_852410_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NC_002758.2_852652_853555_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_000009665.1_ASM966v1	NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	4	905784-905865	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	905808-905841	NC_002758.2_1425186-1425153	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|194aa|up_9|NC_002758.2_898886_899468_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NC_002758.2_899540_900158_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NC_002758.2_900312_900807_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NC_002758.2_901205_901628_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NC_002758.2_901775_902492_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NC_002758.2_902574_903114_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NC_002758.2_903264_903585_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NC_002758.2_903728_904085_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NC_002758.2_904242_904623_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NC_002758.2_904801_905680_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NC_002758.2_906476_906863_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_002758.2_906855_907152_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_002758.2_907401_908427_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_002758.2_908419_909115_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_002758.2_909132_909954_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NC_002758.2_910307_910502_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NC_002758.2_910735_911587_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NC_002758.2_911914_912676_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NC_002758.2_912773_914081_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NC_002758.2_914186_915437_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_000009665.1_ASM966v1	NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	5	1694995-1695079	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	3	1695021-1695053|1695021-1695053|1695021-1695053	NC_002758.2_847858-847890|NC_002758.2_847917-847949|NC_002758.2_1425186-1425154	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NC_002758.2_1684205_1684889_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NC_002758.2_1685132_1685309_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NC_002758.2_1685601_1686948_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NC_002758.2_1686954_1687707_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NC_002758.2_1687708_1688647_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NC_002758.2_1688650_1689790_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NC_002758.2_1689925_1691758_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NC_002758.2_1691826_1692453_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NC_002758.2_1692484_1693462_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NC_002758.2_1693561_1694686_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NC_002758.2_1695251_1697075_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NC_002758.2_1697420_1697672_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NC_002758.2_1697716_1698691_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NC_002758.2_1698747_1700949_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NC_002758.2_1700953_1701415_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NC_002758.2_1701506_1702193_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NC_002758.2_1702232_1702949_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NC_002758.2_1702951_1703305_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NC_002758.2_1703305_1703890_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NC_002758.2_1703879_1704449_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_000009665.1_ASM966v1	NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	6	2131045-2131126	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	2131069-2131102|2131069-2131102|2131069-2131102|2131069-2131102|2131069-2131102	NC_002758.2_842299-842332|NC_002758.2_1213445-1213412|NC_002758.2_1823265-1823232|NC_002758.2_1429527-1429560|NC_002758.2_2837819-2837852	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|87aa|up_9|NC_002758.2_2121957_2122218_-,NA|61aa|up_5|NC_002758.2_2124267_2124450_+,NA|71aa|down_6|NC_002758.2_2138933_2139146_-,NA|193aa|down_9|NC_002758.2_2140090_2140669_-	NA|87aa|up_9|NC_002758.2_2121957_2122218_-	NA	NA|81aa|up_8|NC_002758.2_2122231_2122474_-	pfam05339, DUF739, Protein of unknown function (DUF739)	NA|239aa|up_7|NC_002758.2_2122637_2123354_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|286aa|up_6|NC_002758.2_2123365_2124223_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|61aa|up_5|NC_002758.2_2124267_2124450_+	NA	NA|155aa|up_4|NC_002758.2_2124549_2125014_+	PRK08119, PRK08119, flagellar motor switch protein; Validated	NA|346aa|up_3|NC_002758.2_2125072_2126110_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NC_002758.2_2127228_2128245_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NC_002758.2_2128266_2129322_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|401aa|up_0|NC_002758.2_2129757_2130960_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NC_002758.2_2131267_2132575_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|241aa|down_1|NC_002758.2_2133591_2134314_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|267aa|down_2|NC_002758.2_2134482_2135283_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|187aa|down_3|NC_002758.2_2136069_2136630_+	cd15783, SA1633_like, Uncharacterized protein family conserved in Staphylococci	NA|235aa|down_4|NC_002758.2_2137508_2138213_+	PRK13038, PRK13038, superantigen-like protein; Reviewed	NA|190aa|down_5|NC_002758.2_2138367_2138937_-	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|71aa|down_6|NC_002758.2_2138933_2139146_-	NA	NA|176aa|down_7|NC_002758.2_2139276_2139804_-	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane]	NA|73aa|down_8|NC_002758.2_2139854_2140073_-	pfam16722, SAPIS-gp6, Pathogenicity island protein gp6 in Staphylococcus	NA|193aa|down_9|NC_002758.2_2140090_2140669_-	NA
GCF_000009665.1_ASM966v1	NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	7	2146687-2146775	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|114aa|up_9|NC_002758.2_2140680_2141022_-,NA|127aa|up_7|NC_002758.2_2142107_2142488_-,NA|70aa|up_3|NC_002758.2_2145783_2145993_-,NA|49aa|up_2|NC_002758.2_2145985_2146132_-,NA	NA|114aa|up_9|NC_002758.2_2140680_2141022_-	NA	NA|214aa|up_8|NC_002758.2_2141469_2142111_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_7|NC_002758.2_2142107_2142488_-	NA	NA|570aa|up_6|NC_002758.2_2142797_2144507_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_5|NC_002758.2_2144520_2145390_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|109aa|up_4|NC_002758.2_2145454_2145781_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|70aa|up_3|NC_002758.2_2145783_2145993_-	NA	NA|49aa|up_2|NC_002758.2_2145985_2146132_-	NA	NA|106aa|up_1|NC_002758.2_2146128_2146446_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NC_002758.2_2146450_2146669_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NC_002758.2_2146841_2147516_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NC_002758.2_2147529_2148702_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NC_002758.2_2148770_2150387_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NC_002758.2_2150462_2150747_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NC_002758.2_2150921_2151665_+	pfam02517, Abi, CAAX protease self-immunity	NA|416aa|down_5|NC_002758.2_2151689_2152937_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|NC_002758.2_2153133_2153760_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|NC_002758.2_2154120_2154906_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|NC_002758.2_2155505_2155640_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_9|NC_002758.2_2155875_2156439_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
GCF_000009665.1_ASM966v1	NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	8	2275848-2275928	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NC_002758.2_2270722_2270953_-,NA|364aa|up_0|NC_002758.2_2274739_2275831_+,NA|35aa|down_0|NC_002758.2_2276263_2276368_-,NA|53aa|down_1|NC_002758.2_2277047_2277206_+	NA|237aa|up_9|NC_002758.2_2266333_2267044_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NC_002758.2_2267164_2267608_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NC_002758.2_2267807_2268221_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NC_002758.2_2268677_2270051_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NC_002758.2_2270722_2270953_-	NA	NA|313aa|up_4|NC_002758.2_2270983_2271922_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NC_002758.2_2272357_2273023_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NC_002758.2_2273174_2273495_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NC_002758.2_2273496_2274474_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NC_002758.2_2274739_2275831_+	NA	NA|35aa|down_0|NC_002758.2_2276263_2276368_-	NA	NA|53aa|down_1|NC_002758.2_2277047_2277206_+	NA	NA|286aa|down_2|NC_002758.2_2277863_2278721_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NC_002758.2_2278788_2279571_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NC_002758.2_2279802_2281608_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NC_002758.2_2282288_2283827_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NC_002758.2_2283861_2285994_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NC_002758.2_2286005_2286440_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NC_002758.2_2286439_2287546_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NC_002758.2_2287864_2295310_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_000009665.1_ASM966v1	NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	9	2288169-2288254	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|364aa|up_9|NC_002758.2_2274739_2275831_+,NA|35aa|up_8|NC_002758.2_2276263_2276368_-,NA|53aa|up_7|NC_002758.2_2277047_2277206_+,NA	NA|364aa|up_9|NC_002758.2_2274739_2275831_+	NA	NA|35aa|up_8|NC_002758.2_2276263_2276368_-	NA	NA|53aa|up_7|NC_002758.2_2277047_2277206_+	NA	NA|286aa|up_6|NC_002758.2_2277863_2278721_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NC_002758.2_2278788_2279571_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NC_002758.2_2279802_2281608_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NC_002758.2_2282288_2283827_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NC_002758.2_2283861_2285994_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NC_002758.2_2286005_2286440_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NC_002758.2_2286439_2287546_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NC_002758.2_2295587_2296943_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NC_002758.2_2296969_2297902_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NC_002758.2_2297903_2298713_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NC_002758.2_2298901_2299810_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NC_002758.2_2306050_2307115_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NC_002758.2_2307262_2308705_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NC_002758.2_2309027_2309501_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|228aa|down_7|NC_002758.2_2310899_2311583_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_8|NC_002758.2_2311601_2312789_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|172aa|down_9|NC_002758.2_2312832_2313348_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
GCF_000009665.1_ASM966v1	NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	10	2395928-2396008	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	17	2395953-2395983|2395953-2395983|2395953-2395983|2395953-2395983|2395953-2395983|2395953-2395983|2395953-2395983|2395953-2395983|2395953-2395983|2395953-2395983|2395953-2395983|2395953-2395983|2395953-2395983|2395953-2395983|2395953-2395983|2395953-2395983|2395953-2395983	NC_002758.2_855102-855132|NC_002758.2_855158-855188|NC_002758.2_855214-855244|NC_002758.2_855270-855300|NC_002758.2_89901-89931|NC_002758.2_387943-387913|NC_002758.2_676027-675997|NC_002758.2_855326-855356|NC_002758.2_906120-906150|NC_002758.2_1116421-1116451|NC_002758.2_1219043-1219013|NC_002758.2_1425142-1425112|NC_002758.2_1513546-1513576|NC_002758.2_1709689-1709659|NC_002758.2_2028536-2028566|NC_002758.2_2385152-2385182|NC_002758.2_2562186-2562216	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NC_002758.2_2386461_2386626_+,NA|106aa|up_8|NC_002758.2_2386870_2387188_+,NA|84aa|up_5|NC_002758.2_2392309_2392561_+,NA|62aa|up_0|NC_002758.2_2395700_2395886_+,NA	NA|55aa|up_9|NC_002758.2_2386461_2386626_+	NA	NA|106aa|up_8|NC_002758.2_2386870_2387188_+	NA	NA|1056aa|up_7|NC_002758.2_2387371_2390539_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_002758.2_2390655_2391921_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_002758.2_2392309_2392561_+	NA	NA|255aa|up_4|NC_002758.2_2392552_2393317_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_002758.2_2393478_2393919_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_002758.2_2393911_2395123_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_002758.2_2395224_2395575_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NC_002758.2_2395700_2395886_+	NA	NA|341aa|down_0|NC_002758.2_2396151_2397174_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_002758.2_2397193_2397793_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_002758.2_2397799_2398033_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_002758.2_2398038_2398485_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_002758.2_2398498_2398984_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_002758.2_2398980_2400240_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_002758.2_2400302_2400797_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_002758.2_2400798_2401305_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_002758.2_2401335_2402340_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_002758.2_2402509_2403115_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
