The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	2878529	432970	457913	2878529	integrase	Streptococcus_phage(78.95%)	25	428878:428892	444806:444820
428878:428892	attL	GATTCATCATTTGAC	NA	NA	NA	NA
WP_000264071.1|432970_434437_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424963.1|434461_436003_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000237797.1|436070_437264_-|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	34.2	8.3e-44
WP_000633907.1|437290_437491_-	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
WP_000845143.1|437988_438219_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	78.9	1.0e-27
WP_000804879.1|438215_438638_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	68.6	7.5e-48
WP_001227350.1|439168_439522_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	89.7	2.2e-53
WP_000691737.1|439864_441784_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	97.2	0.0e+00
WP_001791010.1|441799_441916_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000584387.1|442160_443090_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	56.6	1.1e-83
WP_000768373.1|443106_444129_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	75.5	2.4e-132
WP_000192393.1|444125_446153_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	65.3	5.1e-195
444806:444820	attR	GATTCATCATTTGAC	NA	NA	NA	NA
WP_000331165.1|446149_448603_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	78.9	0.0e+00
WP_000723887.1|448586_448982_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	72.6	5.9e-47
WP_000248477.1|449053_449692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000870467.1|449747_450242_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	63.4	2.8e-54
WP_000675717.1|450308_451088_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_001009054.1|451129_451351_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	93.2	3.1e-29
WP_078056044.1|451347_451590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000426689.1|451633_452818_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	68.1	6.3e-161
WP_001130244.1|452999_454403_-	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	66.5	2.2e-176
WP_000185761.1|454424_455198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001234191.1|455207_455585_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	76.4	9.6e-47
WP_000421279.1|455605_455920_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	77.7	1.2e-42
WP_000181735.1|456119_457913_-	ATP-dependent helicase	NA	E3T5J8	Cafeteria_roenbergensis_virus	23.8	6.9e-26
>prophage 2
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	2878529	779528	787349	2878529		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|779528_780584_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|780583_781270_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|781244_781718_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|782060_782501_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|782780_783365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|783463_784177_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|784180_784600_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|784601_785270_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|785620_786214_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217796.1|786197_787349_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 3
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	2878529	799320	813905	2878529		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|799320_800379_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197262.1|800717_801260_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|802082_803000_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031760357.1|803090_803192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|803269_804775_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|805115_805616_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068501.1|805635_806502_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|807302_807701_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855514.1|807663_809769_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|809886_810858_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|811038_811194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|811232_812204_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|812190_813147_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|813143_813905_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 4
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	2878529	865040	879857	2878529	terminase,integrase,coat	Staphylococcus_phage(75.0%)	21	864708:864723	871130:871145
864708:864723	attL	ATTGATAATGAAATGG	NA	NA	NA	NA
WP_001050048.1|865040_867413_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	4.3e-92
WP_001085183.1|867434_867899_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
WP_000121223.1|868461_869568_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.2	5.9e-76
WP_072474260.1|869573_870221_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001060953.1|870378_870585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000164237.1|870620_870848_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000784893.1|870844_870991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058487.1|870983_871193_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	92.8	2.2e-29
871130:871145	attR	ATTGATAATGAAATGG	NA	NA	NA	NA
WP_001103933.1|871195_871513_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	48.1	1.2e-18
WP_001002695.1|871579_872449_+	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	96.9	3.2e-162
WP_001668899.1|872465_873935_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	99.6	3.4e-289
WP_001039169.1|874220_874583_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	98.3	5.8e-65
WP_000998179.1|874584_874869_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	100.0	1.2e-49
WP_001019810.1|874865_875507_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	87.8	2.3e-104
WP_001190615.1|875956_876298_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846280.1|876309_876888_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
WP_000448770.1|876905_877124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771368.1|877174_877702_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000358774.1|877704_878046_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	99.1	1.4e-57
WP_001293076.1|878042_878612_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.9	9.3e-102
WP_000801979.1|878888_879857_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
>prophage 5
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	2878529	914186	971509	2878529	head,capsid,plate,integrase,portal,transposase,terminase,holin,tail	Staphylococcus_phage(76.81%)	83	916007:916023	925007:925023
WP_001006450.1|914186_915437_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	1.1e-110
WP_001010508.1|915426_915891_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
916007:916023	attL	CGCCGTTGTAAATATAT	NA	NA	NA	NA
WP_001074405.1|916041_917439_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001145728.1|917506_918556_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	100.0	1.6e-203
WP_000337826.1|918667_918847_+	hypothetical protein	NA	A0EWN7	Staphylococcus_virus	100.0	8.3e-25
WP_000392186.1|918826_919759_-	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	100.0	3.9e-174
WP_000524998.1|919790_920255_-	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	94.1	3.6e-80
WP_000429766.1|920267_920597_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_001115060.1|920757_920949_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000939498.1|921037_921181_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000642492.1|921170_921380_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_001148557.1|921436_922216_+	phage antirepressor KilAC domain-containing protein	NA	M1RZB2	Staphylococcus_phage	92.6	4.1e-132
WP_000187184.1|922216_922441_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_000939498.1|922480_922624_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_001838167.1|922645_923293_-	hypothetical protein	NA	S4V9K2	Staphylococcus_phage	100.0	2.0e-113
WP_000977378.1|923363_923585_+	hypothetical protein	NA	E0Y3P2	Staphylococcus_virus	100.0	1.5e-31
WP_000066007.1|923577_923739_+	DUF1270 domain-containing protein	NA	A0A0E3XBK7	Staphylococcus_phage	96.2	4.3e-20
WP_000165363.1|923831_924134_+	DUF2482 family protein	NA	A0A0F6N3N3	Staphylococcus_phage	100.0	1.4e-48
WP_000291068.1|924138_924399_+	DUF1108 family protein	NA	C8CGY6	Staphylococcus_phage	100.0	8.9e-44
WP_000815401.1|924408_924630_+	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000934774.1|925246_925672_+	single-stranded DNA-binding protein	NA	B7T0A5	Staphylococcus_virus	88.7	2.1e-58
925007:925023	attR	ATATATTTACAACGGCG	NA	NA	NA	NA
WP_001004505.1|925682_926234_+	HNH endonuclease	NA	A0A2H4PQR4	Staphylococcus_phage	98.9	5.1e-105
WP_001121803.1|926234_926909_+	hypothetical protein	NA	R4IH15	Staphylococcus_phage	97.8	1.5e-127
WP_000414755.1|927048_927330_-	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_000132051.1|927394_928126_+	helix-turn-helix domain-containing protein	NA	A0A1J0MGB2	Staphylococcus_phage	78.8	9.8e-80
WP_000443353.1|928138_928924_+	ATP-binding protein	NA	A0A0H4J332	Staphylococcus_phage	100.0	1.9e-145
WP_000628836.1|928920_929079_+	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	94.2	1.1e-20
WP_001123695.1|929091_929313_+	DUF3269 family protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
WP_000049784.1|929322_929727_+	DUF1064 domain-containing protein	NA	A7TWN5	Staphylococcus_phage	100.0	7.1e-72
WP_001140289.1|929918_930290_+	hypothetical protein	NA	A7TWN6	Staphylococcus_phage	95.9	4.0e-53
WP_001126846.1|930290_930539_+	hypothetical protein	NA	S4V683	Staphylococcus_phage	97.6	8.8e-41
WP_001065109.1|930553_930802_+	DUF1024 family protein	NA	A0A2H4PQK1	Staphylococcus_phage	93.9	1.7e-36
WP_000185680.1|930794_931331_+	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
WP_000195779.1|931367_931574_+	DUF1381 domain-containing protein	NA	A0A1W6JPM8	Staphylococcus_phage	100.0	4.9e-21
WP_000132920.1|931570_931765_+	hypothetical protein	NA	S4SX95	Staphylococcus_phage	100.0	7.9e-29
WP_001072795.1|931761_931965_+	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_000608273.1|931957_932194_+	hypothetical protein	NA	S4SWB7	Staphylococcus_phage	100.0	1.6e-36
WP_010924755.1|932183_932570_+	hypothetical protein	NA	Q4ZBS3	Staphylococcus_virus	99.2	1.5e-63
WP_000595245.1|932569_932743_+	transcriptional activator RinB	NA	S4SVE4	Staphylococcus_phage	98.2	1.1e-21
WP_000990006.1|932743_932890_+	hypothetical protein	NA	Q4ZDN7	Staphylococcus_virus	100.0	1.3e-15
WP_000058632.1|932904_933324_+	transcriptional regulator	NA	I1W651	Staphylococcus_phage	100.0	8.1e-71
WP_001838172.1|933510_933951_+|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	99.3	2.4e-73
WP_000169948.1|933937_935215_+|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	99.8	5.1e-249
WP_000921892.1|935225_936761_+|portal	phage portal protein	portal	Q4ZDV9	Staphylococcus_virus	99.4	9.3e-290
WP_001133043.1|936767_937763_+|capsid	minor capsid protein	capsid	E0Y3K7	Staphylococcus_virus	100.0	3.4e-184
WP_000072207.1|937835_938006_+	hypothetical protein	NA	Q4ZDF2	Staphylococcus_virus	100.0	3.3e-23
WP_000354307.1|938140_938755_+	DUF4355 domain-containing protein	NA	A0EWS9	Staphylococcus_virus	100.0	4.9e-40
WP_001114085.1|939763_940051_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
WP_000208960.1|940059_940392_+|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001268314.1|940388_940691_+	hypothetical protein	NA	S4V7K8	Staphylococcus_phage	100.0	1.1e-50
WP_001017814.1|940690_941038_+	HK97 gp10 family phage protein	NA	S4V987	Staphylococcus_phage	100.0	3.1e-60
WP_000188649.1|941049_941433_+	hypothetical protein	NA	A0A0F6N3L1	Staphylococcus_phage	100.0	1.5e-68
WP_000002577.1|941451_942033_+|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
WP_001100167.1|942094_942460_+	hypothetical protein	NA	S4V9M6	Staphylococcus_phage	100.0	2.8e-59
WP_000105584.1|942489_942834_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_000141453.1|942850_946315_+	hypothetical protein	NA	S4V989	Staphylococcus_phage	100.0	5.8e-271
WP_000350686.1|946327_947275_+|tail	phage tail family protein	tail	S4V688	Staphylococcus_phage	100.0	3.6e-183
WP_000156404.1|947283_949185_+|tail	phage tail protein	tail	Q4ZDD8	Staphylococcus_virus	100.0	0.0e+00
WP_000369014.1|949199_951110_+	hypothetical protein	NA	A1KX41	Staphylococcus_virus	99.8	0.0e+00
WP_000259629.1|951109_952933_+|plate	BppU family phage baseplate upper protein	plate	W5R8J5	Staphylococcus_phage	99.2	7.4e-294
WP_000705911.1|952932_953310_+	DUF2977 domain-containing protein	NA	Q9FZY7	Staphylococcus_virus	99.2	3.4e-60
WP_000782200.1|953313_953487_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466784.1|953527_953827_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000524006.1|953963_955862_+	glucosaminidase domain-containing protein	NA	Q8SDT1	Staphylococcus_phage	99.8	0.0e+00
WP_000276646.1|955874_957113_+|plate	BppU family phage baseplate upper protein	plate	A0A0F6N3G7	Staphylococcus_phage	98.1	2.7e-207
WP_000398870.1|957118_957514_+	hypothetical protein	NA	A0A0E3XBL9	Staphylococcus_phage	97.7	1.4e-67
WP_000354127.1|957569_958007_+|holin	phage holin	holin	Q8SDS8	Staphylococcus_phage	99.3	6.9e-73
WP_001148136.1|957987_959433_+	SH3 domain-containing protein	NA	Q08JW9	Staphylococcus_phage	99.8	1.8e-295
WP_001788502.1|959675_959828_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_001838173.1|959898_960009_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	97.2	4.9e-12
WP_001286805.1|960010_960196_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_000221922.1|960528_961161_+	DUF4065 domain-containing protein	NA	NA	NA	NA	NA
WP_000543718.1|961153_961585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000274029.1|962250_962565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000582326.1|962929_963970_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_000267238.1|963983_965051_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_016170465.1|965304_965388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000608129.1|965435_966284_+	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_000927632.1|966296_967124_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_001241246.1|967150_968470_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000201875.1|968553_969471_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_000598444.1|969600_969984_+	YutD family protein	NA	NA	NA	NA	NA
WP_001557163.1|970189_971509_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	2878529	1117931	1126404	2878529		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1117931_1118414_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010413.1|1118400_1119525_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1119528_1120233_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1120232_1120496_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1120497_1121169_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|1121161_1123351_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483720.1|1123329_1124814_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030811.1|1124806_1125835_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1125837_1126404_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 7
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	2878529	1744666	1814956	2878529	protease,integrase,tRNA,transposase	uncultured_Mediterranean_phage(15.79%)	65	1754897:1754916	1825709:1825728
WP_000364542.1|1744666_1745185_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595011.1|1745206_1747480_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000749795.1|1747682_1749962_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1750236_1750497_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1750515_1751655_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1751677_1752703_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1752704_1753709_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_000271550.1|1753740_1754343_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_000368902.1|1754356_1754812_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_000496100.1|1754824_1756117_-	GTPase ObgE	NA	NA	NA	NA	NA
1754897:1754916	attL	TGCATCATCAATACCCATCG	NA	NA	NA	NA
WP_000916187.1|1756470_1756755_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_000633692.1|1756766_1757087_-|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
WP_000457386.1|1757092_1757401_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_001259925.1|1757636_1758167_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_000911041.1|1758166_1759009_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_000840602.1|1759207_1759327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001236734.1|1759400_1759874_-	DUF4930 family protein	NA	NA	NA	NA	NA
WP_000025835.1|1760033_1760231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000171859.1|1760347_1760632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001092058.1|1761060_1761723_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_001072201.1|1762256_1762988_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
WP_000067268.1|1763113_1763896_-	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NA	NA	NA	NA	NA
WP_000361059.1|1764046_1764424_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001557544.1|1764430_1766323_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000868132.1|1766319_1767405_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
WP_000261115.1|1768074_1768782_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_001108346.1|1769051_1770323_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_000425350.1|1770335_1772966_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.7	2.8e-153
WP_001001236.1|1773368_1773929_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_000177998.1|1774151_1775225_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_001788970.1|1775258_1775360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001270865.1|1775420_1776707_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_000667126.1|1776754_1777729_-	porphobilinogen synthase	NA	NA	NA	NA	NA
WP_000805951.1|1777731_1778400_-	uroporphyrinogen-III synthase	NA	NA	NA	NA	NA
WP_001230232.1|1778421_1779348_-	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
WP_001157329.1|1779389_1780205_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_000545451.1|1780226_1781573_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_000867697.1|1781789_1782380_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_000472302.1|1782533_1783796_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.0	5.0e-140
WP_000127573.1|1783946_1785248_-	trigger factor	NA	NA	NA	NA	NA
WP_001790560.1|1785295_1785406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001280022.1|1785410_1786340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000032657.1|1786358_1786967_-	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
WP_001138360.1|1787108_1787465_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_001125540.1|1787511_1787712_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001791162.1|1787740_1788268_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	4.1e-11
WP_000049145.1|1788496_1789990_-	amino acid permease	NA	NA	NA	NA	NA
WP_000435143.1|1790415_1792353_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	35.8	5.0e-115
WP_001790562.1|1792550_1792673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000808621.1|1792765_1793686_-	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
WP_000533479.1|1793685_1795086_-	DnaD domain protein	NA	NA	NA	NA	NA
WP_000650082.1|1795086_1795557_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_000106141.1|1795767_1796793_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_001127167.1|1796962_1797586_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_001114454.1|1797601_1798474_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.1	2.6e-42
WP_001038317.1|1798489_1801120_-	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.1e-47
WP_000849428.1|1801413_1802901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015445861.1|1803399_1805061_-	HAMP domain-containing sensor histidine kinase	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
WP_000080028.1|1805060_1805765_-	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
WP_000123165.1|1806154_1807423_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_000829167.1|1807471_1808593_-	citrate synthase	NA	NA	NA	NA	NA
WP_000818525.1|1808940_1810302_+	amino acid permease	NA	NA	NA	NA	NA
WP_001232648.1|1810649_1812407_-	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	2.6e-41
WP_000717561.1|1812428_1813397_-	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_001557163.1|1813636_1814956_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
1825709:1825728	attR	TGCATCATCAATACCCATCG	NA	NA	NA	NA
>prophage 8
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	2878529	1877470	1944454	2878529	protease,tRNA	Staphylococcus_phage(95.24%)	60	NA	NA
WP_001266161.1|1877470_1878115_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_000434765.1|1878129_1878921_-	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_000411084.1|1879470_1880319_-	D-amino-acid transaminase	NA	NA	NA	NA	NA
WP_000265417.1|1880322_1881732_-	Mn(2+)-dependent dipeptidase Sapep	NA	NA	NA	NA	NA
WP_001051856.1|1882289_1882712_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_001217125.1|1882728_1883424_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000004335.1|1883420_1885082_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_000836461.1|1893639_1893951_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001557386.1|1893972_1896390_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025067.1|1896677_1897859_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_000526539.1|1897968_1898922_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1898918_1899482_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1899604_1900006_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1900575_1901403_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1901405_1901525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196362.1|1901636_1902638_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001008549.1|1902759_1903224_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159037.1|1903236_1904418_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493887.1|1904428_1905061_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_000077358.1|1905067_1906111_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
WP_001261668.1|1906591_1908094_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1908616_1908931_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1908930_1910223_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032830.1|1910309_1911164_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	1.3e-38
WP_000384171.1|1911439_1911664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|1911862_1912333_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153742.1|1912445_1912889_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1912875_1913319_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168903.1|1913614_1914250_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096495.1|1914689_1915403_-	transaldolase	NA	M1PR54	Cyanophage	35.3	9.4e-19
WP_000091442.1|1915662_1915965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1916220_1916586_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623470.1|1916582_1916936_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_000453306.1|1918932_1919766_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000366163.1|1919977_1920886_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933820.1|1921007_1922204_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109906.1|1922575_1924168_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001822900.1|1924545_1925292_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672013.1|1925296_1925770_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1925835_1926093_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778528.1|1926089_1927091_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000348364.1|1927095_1928574_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_012840523.1|1928732_1929188_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_001795210.1|1929490_1930141_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_000070642.1|1930221_1931217_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669024.1|1931291_1931918_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000627540.1|1931958_1932300_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000414216.1|1932400_1932973_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_001801861.1|1934327_1934423_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001792025.1|1934545_1934647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072626.1|1935722_1936952_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	6.8e-134
WP_000028669.1|1936944_1938501_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
WP_001791797.1|1938664_1938799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|1938861_1939581_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_011447030.1|1939682_1939790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1939738_1940458_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038872.1|1940578_1941298_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001039454.1|1941355_1942078_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001039427.1|1942202_1942910_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001092780.1|1943872_1944454_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
>prophage 9
NC_002758	Staphylococcus aureus subsp. aureus Mu50, complete genome	2878529	2042781	2150747	2878529	coat,protease,head,capsid,integrase,portal,terminase,tRNA,holin,tail	Staphylococcus_phage(83.16%)	132	2039218:2039242	2153939:2153963
2039218:2039242	attL	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
WP_000170162.1|2042781_2043084_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|2043450_2044989_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831700.1|2045077_2046277_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774556.1|2046289_2048293_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
WP_000992924.1|2048296_2050489_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272054.1|2050485_2051178_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2051349_2051652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2051760_2053056_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827746.1|2053915_2055082_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2055112_2055439_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2055730_2055904_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2055884_2056487_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|2056757_2057579_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284436.1|2057571_2059041_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000897635.1|2059224_2060301_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|2060320_2061115_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2061186_2061294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2061304_2062867_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275727.1|2063071_2064169_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|2064537_2065098_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2065150_2066080_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|2066272_2066446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021210.1|2066497_2067877_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181315.1|2067996_2069025_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2069294_2069696_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2070268_2070442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|2070892_2071933_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2071989_2072832_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2072828_2073386_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2073445_2073970_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2074090_2074654_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2074719_2075460_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763043.1|2075459_2076332_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
WP_000645727.1|2076328_2077009_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991306.1|2077009_2077906_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000691584.1|2077902_2078283_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2078540_2078717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2078959_2079058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2079257_2080544_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000671712.1|2080822_2081113_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001557458.1|2081127_2082558_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669791.1|2083514_2083694_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001791826.1|2084004_2084265_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2084316_2084667_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000920038.1|2086163_2086655_-	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000861035.1|2086869_2087601_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	99.2	1.8e-145
WP_000611512.1|2087612_2087867_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_031762631.1|2087918_2088026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2088078_2088255_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000750412.1|2088363_2089137_-	staphylococcal enterotoxin type A	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
WP_000340977.1|2089509_2089884_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262621.1|2089939_2090227_-	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_001000058.1|2090272_2090425_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_000582139.1|2090417_2094200_-	hypothetical protein	NA	A0A1X9H096	Staphylococcus_phage	99.5	0.0e+00
WP_000567408.1|2094215_2095700_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001795393.1|2095696_2100226_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	100.0	0.0e+00
WP_001549167.1|2100282_2100420_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096355.1|2100470_2100821_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_072050172.1|2100870_2101095_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	98.6	8.8e-32
WP_000268741.1|2101136_2101781_-|tail	phage tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|2101781_2102189_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114227.1|2102185_2102590_-	HK97 gp10 family phage protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
WP_000755150.1|2102586_2102949_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|2102932_2103217_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2103206_2103491_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|2103510_2104656_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2104679_2105417_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2105400_2106588_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2106603_2108265_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2108261_2108606_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988330.1|2108735_2109035_-	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2109266_2109683_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|2109710_2109911_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000195778.1|2110058_2110265_-	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	82.4	2.8e-24
WP_001209219.1|2110281_2110455_-	hypothetical protein	NA	S4SVD5	Staphylococcus_phage	100.0	3.6e-25
WP_000181819.1|2110491_2111025_-	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_000700108.1|2111017_2111260_-	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_001065101.1|2111249_2111486_-	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_001793991.1|2111478_2111850_-	hypothetical protein	NA	A0ZS31	Staphylococcus_virus	96.7	3.6e-62
WP_000131382.1|2111858_2112101_-	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	98.8	1.6e-39
WP_000101288.1|2112104_2112473_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401977.1|2112485_2112890_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000338530.1|2112898_2113117_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148333.1|2113123_2114017_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000934760.1|2114046_2114517_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	99.4	7.4e-81
WP_071621397.1|2114517_2115135_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000138475.1|2115215_2116136_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700557.1|2116137_2118081_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	98.0	0.0e+00
WP_001205732.1|2118089_2118353_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291483.1|2118361_2118622_-	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	93.0	1.2e-40
WP_000165366.1|2118626_2118929_-	DUF2482 family protein	NA	A0A0F6N3N3	Staphylococcus_phage	62.0	8.0e-28
WP_000066023.1|2119018_2119180_-	DUF1270 family protein	NA	C8CGY5	Staphylococcus_phage	88.7	2.0e-17
WP_001120197.1|2119176_2119497_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|2119551_2120184_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|2120198_2120339_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_001148861.1|2120369_2120567_-	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
WP_001148341.1|2120582_2121338_-	phage antirepressor KilAC domain-containing protein	NA	A0A1P8L6G2	Staphylococcus_phage	100.0	3.3e-139
WP_000351243.1|2121394_2121934_+	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_000435341.1|2121957_2122218_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000639927.1|2122231_2122474_-	DUF739 family protein	NA	Q9G038	Staphylococcus_virus	100.0	2.8e-39
WP_001083967.1|2122637_2123354_+	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	100.0	9.2e-131
WP_000804507.1|2123365_2124223_+	restriction endonuclease	NA	R9QTP0	Staphylococcus_phage	99.6	3.5e-161
WP_000694772.1|2124267_2124450_+	hypothetical protein	NA	A0A2I6PDF8	Staphylococcus_phage	100.0	6.9e-27
WP_000825947.1|2124549_2125014_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000857191.1|2125072_2126110_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000595392.1|2127228_2128245_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000791413.1|2128266_2129322_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	7.4e-36
WP_000206624.1|2129757_2130960_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045082.1|2131267_2132575_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000746599.1|2133591_2134314_+	staphylococcal enterotoxin type L	NA	A0A1X9H080	Staphylococcus_phage	34.9	2.1e-26
WP_000278088.1|2134482_2135283_-	staphylococcal enterotoxin type C3	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.5	6.1e-51
WP_001035616.1|2136069_2136630_+	DUF4888 domain-containing protein	NA	Q4ZBG8	Staphylococcus_virus	68.1	5.4e-62
WP_001035599.1|2137508_2138213_+	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA	NA
WP_001293088.1|2138367_2138937_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	7.9e-101
WP_001807583.1|2138933_2139146_-	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	100.0	3.7e-32
WP_000771368.1|2139276_2139804_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000448770.1|2139854_2140073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846280.1|2140090_2140669_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
WP_001190615.1|2140680_2141022_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_001047698.1|2141469_2142111_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.0	7.2e-111
WP_000356942.1|2142107_2142488_-	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	96.8	1.7e-67
WP_000447473.1|2142797_2144507_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	92.8	1.4e-302
WP_001002689.1|2144520_2145390_-	primase C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	96.2	1.5e-164
WP_001078344.1|2145454_2145781_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	89.8	1.5e-48
WP_001058495.1|2145783_2145993_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	2.9e-29
WP_000784885.1|2145985_2146132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481967.1|2146128_2146446_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
WP_000153640.1|2146450_2146669_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
WP_000620857.1|2146841_2147516_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
WP_000179343.1|2147529_2148702_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	96.2	5.8e-215
WP_000240642.1|2148770_2150387_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2150462_2150747_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
2153939:2153963	attR	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
>prophage 1
NC_002774	Staphylococcus aureus subsp. aureus Mu50 plasmid VRSAp, complete sequence	25107	14780	23137	25107	transposase	Staphylococcus_phage(66.67%)	8	NA	NA
WP_001106006.1|14780_15455_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	2.2e-126
WP_000889978.1|15725_15821_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001568510.1|15985_16651_+|transposase	IS6-like element IS257-2 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	91.6	5.9e-108
WP_001028144.1|17223_18663_-	aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
WP_000393259.1|18663_19056_-	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
WP_001105984.1|19547_20222_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	3.8e-126
WP_001807342.1|20848_21415_-	multidrug-binding transcriptional regulator QacR	NA	NA	NA	NA	NA
WP_000622776.1|21592_23137_+	quaternary ammonium compound efflux MFS transporter QacA	NA	A0A0M3UL24	Mycobacterium_phage	26.8	4.2e-32
