bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	1.1|188453|33|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	100.00	33	0	0	1	33	1348825	1348857	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	1e-09	53.9	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1348825-1348857	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	1.1|188453|33|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	93.94	33	2	0	1	33	823697	823665	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	1e-07	47.5	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	823665-823697	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	1.1|188453|33|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	93.94	33	2	0	1	33	823756	823724	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	1e-07	47.5	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	823724-823756	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	1.1|188453|33|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	93.94	33	2	0	1	33	1437123	1437091	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	1e-07	47.5	1.0	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1437091-1437123	ATTGGGAATACAATTTCTCTTTGTTGGGGTCCA	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	4.1|818131|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	100.00	31	0	0	1	31	311654	311624	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	9e-09	50.7	1.0	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	311624-311654	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	0
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	4.1|818131|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	96.77	31	1	0	1	31	311599	311569	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	8e-08	47.5	1.0	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	311569-311599	GGTAATGCAAGTTGGCGGGGCCCCAACACAG	1
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	5.1|874004|34|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	97.06	34	1	0	1	34	1348857	1348824	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	4e-09	52.3	1.0	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT	1348824-1348857	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	6.1|1618610|33|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	96.97	33	1	0	1	33	823665	823697	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	1e-08	50.7	1.0	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA	823665-823697	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	1
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	6.1|1618610|33|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	96.97	33	1	0	1	33	823724	823756	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	1e-08	50.7	1.0	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA	823724-823756	ATTGGAAATCCAATTTCTCTGTGTTGGGGCCCA	1
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	6.1|1618610|33|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	96.97	33	1	0	1	33	1348857	1348825	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	1e-08	50.7	1.0	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA	1348825-1348857	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	7.2|1653121|22|NC_002745|PILER-CR	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	90.91	22	2	0	1	22	1137227	1137206	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	0.010	30.1	1.0	TGAAATTGGGGTTCCAATTTCT	1137206-1137227	AGAAATTGGATCACCAATTTCA	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	7.2|1653121|22|NC_002745|PILER-CR	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	90.91	22	2	0	1	22	2054581	2054602	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	0.010	30.1	1.0	TGAAATTGGGGTTCCAATTTCT	2054581-2054602	TGAAATTGGGAATCCAATTTCT	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	7.2|1653121|22|NC_002745|PILER-CR	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	90.91	22	2	0	1	22	2054698	2054719	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	0.010	30.1	1.0	TGAAATTGGGGTTCCAATTTCT	2054698-2054719	TGAAATTGGGAATCCAATTTCT	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	8.1|2054636|34|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	100.00	34	0	0	1	34	818106	818139	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	5e-10	55.5	1.0	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	818106-818139	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	0
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	8.1|2054636|34|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	100.00	34	0	0	1	34	1137117	1137084	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	5e-10	55.5	1.0	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	1137084-1137117	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	0
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	8.1|2054636|34|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	97.06	34	1	0	1	34	1745352	1745319	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	4e-09	52.3	1.0	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	1745319-1745352	CCAACACAAAGAATTTCGAAAAGAAATTCTACAA	1
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	8.1|2054636|34|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	94.12	34	2	0	1	34	1353198	1353231	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	4e-08	49.1	1.0	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	1353198-1353231	TTGTGGAATTTCTTATCGAAATTCTCTGTGTTGG	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	8.1|2054636|34|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	94.12	34	2	0	1	34	2774105	2774138	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	4e-08	49.1	1.0	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	2774105-2774138	TTGTAGAATTTCTTTTCGAAATTCTTTTTGTTGG	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	96.77	31	1	0	1	31	830909	830939	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	8e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	830909-830939	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	96.77	31	1	0	1	31	830965	830995	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	8e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	830965-830995	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	96.77	31	1	0	1	31	831021	831051	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	8e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	831021-831051	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	96.77	31	1	0	1	31	831077	831107	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	8e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	831077-831107	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	93.55	31	2	0	1	31	89940	89970	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	89940-89970	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	93.55	31	2	0	1	31	387986	387956	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	387956-387986	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	93.55	31	2	0	1	31	651780	651750	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	651750-651780	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	93.55	31	2	0	1	31	831133	831163	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	831133-831163	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	93.55	31	2	0	1	31	874316	874346	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	874316-874346	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	93.55	31	2	0	1	31	1040093	1040123	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1040093-1040123	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	93.55	31	2	0	1	31	1142715	1142685	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1142685-1142715	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	93.55	31	2	0	1	31	1348813	1348783	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1348783-1348813	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	93.55	31	2	0	1	31	1437135	1437165	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1437135-1437165	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	93.55	31	2	0	1	31	1633278	1633248	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1633248-1633278	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	93.55	31	2	0	1	31	1950741	1950771	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1950741-1950771	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	93.55	31	2	0	1	31	2315652	2315682	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2315652-2315682	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12.1|2326453|31|NC_002745|CRISPRCasFinder	NC_002745.2	Staphylococcus aureus subsp. aureus N315, complete genome	93.55	31	2	0	1	31	2491006	2491036	188427-188511|428213-428314|777160-777242|818107-818185|873980-874061|1618584-1618668|1653014-1653161|2054612-2054693|2070257-2070345|2206128-2206208|2218449-2218534|2326428-2326508	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2491006-2491036	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
