assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000009645.1_ASM964v1	NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	1	188427-188511	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	4	188453-188485|188453-188485|188453-188485|188453-188485	NC_002745.2_1348825-1348857|NC_002745.2_823697-823665|NC_002745.2_823756-823724|NC_002745.2_1437123-1437091	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|402aa|up_9|NC_002745.2_177572_178778_+,NA|68aa|down_0|NC_002745.2_188572_188776_-	NA|402aa|up_9|NC_002745.2_177572_178778_+	NA	NA|402aa|up_8|NC_002745.2_178778_179984_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NC_002745.2_179994_180552_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NC_002745.2_180551_181439_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NC_002745.2_181492_182755_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NC_002745.2_182831_183977_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NC_002745.2_184041_184368_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NC_002745.2_184374_184758_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NC_002745.2_185184_186672_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NC_002745.2_187318_188278_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NC_002745.2_188572_188776_-	NA	NA|171aa|down_1|NC_002745.2_188954_189467_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NC_002745.2_189808_190549_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|NC_002745.2_190562_191534_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NC_002745.2_191530_192292_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NC_002745.2_192304_193336_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NC_002745.2_193552_193912_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NC_002745.2_194085_195111_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NC_002745.2_195496_196747_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NC_002745.2_197193_204369_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_000009645.1_ASM964v1	NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	2	428213-428314	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_9|NC_002745.2_418252_418462_-,NA|128aa|up_7|NC_002745.2_419286_419670_-,NA|33aa|up_1|NC_002745.2_425917_426016_+,NA|221aa|down_1|NC_002745.2_429404_430067_-,NA|179aa|down_7|NC_002745.2_436158_436695_-	NA|70aa|up_9|NC_002745.2_418252_418462_-	NA	NA|194aa|up_8|NC_002745.2_418639_419221_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NC_002745.2_419286_419670_-	NA	NA|209aa|up_6|NC_002745.2_419939_420566_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|NC_002745.2_421009_422533_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NC_002745.2_422548_423118_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NC_002745.2_423609_424365_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NC_002745.2_424444_425833_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|NC_002745.2_425917_426016_+	NA	NA|440aa|up_0|NC_002745.2_426679_427999_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|319aa|down_0|NC_002745.2_428330_429287_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NC_002745.2_429404_430067_-	NA	NA|136aa|down_2|NC_002745.2_430209_430617_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_002745.2_431129_431708_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_002745.2_431707_432976_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_002745.2_433013_434480_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_002745.2_434504_436046_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NC_002745.2_436158_436695_-	NA	NA|235aa|down_8|NC_002745.2_437086_437791_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NC_002745.2_438189_438462_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000009645.1_ASM964v1	NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	3	777160-777242	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_9|NC_002745.2_763773_763980_+,NA|34aa|down_1|NC_002745.2_778897_778999_+,NA|52aa|down_8|NC_002745.2_786845_787001_+	NA|69aa|up_9|NC_002745.2_763773_763980_+	NA	NA|237aa|up_8|NC_002745.2_764067_764778_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_002745.2_764761_765766_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_002745.2_766239_768180_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_002745.2_768449_770333_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_002745.2_770344_772126_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_002745.2_772347_773325_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_002745.2_773317_774832_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_002745.2_775071_776130_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_002745.2_776468_777011_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_002745.2_777889_778807_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_002745.2_778897_778999_+	NA	NA|502aa|down_2|NC_002745.2_779076_780582_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NC_002745.2_780922_781423_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NC_002745.2_781442_782309_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NC_002745.2_783109_783508_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NC_002745.2_783470_785576_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NC_002745.2_785693_786665_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NC_002745.2_786845_787001_+	NA	NA|324aa|down_9|NC_002745.2_787039_788011_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_000009645.1_ASM964v1	NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	4	818107-818185	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	2	818131-818161|818131-818161	NC_002745.2_311654-311624|NC_002745.2_311599-311569	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NC_002745.2_808983_809088_+,NA|36aa|up_5|NC_002745.2_810520_810628_+,NA	NA|191aa|up_9|NC_002745.2_805424_805997_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NC_002745.2_806410_808942_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NC_002745.2_808983_809088_+	NA	NA|370aa|up_6|NC_002745.2_809256_810367_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NC_002745.2_810520_810628_+	NA	NA|280aa|up_4|NC_002745.2_810775_811615_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NC_002745.2_811788_812439_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NC_002745.2_812435_812672_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NC_002745.2_812940_814926_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NC_002745.2_814933_817780_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NC_002745.2_818443_819376_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NC_002745.2_819381_820221_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NC_002745.2_820228_820714_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NC_002745.2_820721_822161_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NC_002745.2_822227_823163_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NC_002745.2_824107_825019_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NC_002745.2_825015_826011_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NC_002745.2_826121_827066_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NC_002745.2_827629_828217_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NC_002745.2_828459_829362_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_000009645.1_ASM964v1	NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	5	873980-874061	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	874004-874037	NC_002745.2_1348857-1348824	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|126aa|up_3|NC_002745.2_869988_870366_+,NA	NA|180aa|up_9|NC_002745.2_864058_864598_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_8|NC_002745.2_864748_865069_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_7|NC_002745.2_865212_865569_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_6|NC_002745.2_865726_866107_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|362aa|up_5|NC_002745.2_867007_868093_+	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|631aa|up_4|NC_002745.2_868089_869982_+	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|126aa|up_3|NC_002745.2_869988_870366_+	NA	NA|261aa|up_2|NC_002745.2_870516_871299_+	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|244aa|up_1|NC_002745.2_871424_872156_-	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|221aa|up_0|NC_002745.2_872689_873352_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|129aa|down_0|NC_002745.2_874672_875059_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_002745.2_875051_875348_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_002745.2_875597_876623_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_002745.2_876615_877311_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_002745.2_877328_878150_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NC_002745.2_878503_878698_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NC_002745.2_878931_879783_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NC_002745.2_880110_880872_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NC_002745.2_880969_882277_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NC_002745.2_882382_883633_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_000009645.1_ASM964v1	NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	6	1618584-1618668	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	3	1618610-1618642|1618610-1618642|1618610-1618642	NC_002745.2_823665-823697|NC_002745.2_823724-823756|NC_002745.2_1348857-1348825	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NC_002745.2_1607793_1608477_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NC_002745.2_1608720_1608897_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NC_002745.2_1609189_1610536_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NC_002745.2_1610542_1611295_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NC_002745.2_1611296_1612235_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NC_002745.2_1612238_1613378_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NC_002745.2_1613513_1615346_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NC_002745.2_1615414_1616041_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NC_002745.2_1616072_1617050_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NC_002745.2_1617150_1618275_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NC_002745.2_1618840_1620664_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NC_002745.2_1621009_1621261_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NC_002745.2_1621305_1622280_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NC_002745.2_1622336_1624538_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NC_002745.2_1624542_1625004_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NC_002745.2_1625095_1625782_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NC_002745.2_1625821_1626538_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NC_002745.2_1626540_1626894_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NC_002745.2_1626894_1627479_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NC_002745.2_1627468_1628038_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_000009645.1_ASM964v1	NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	7	1653014-1653161	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CTATGTTGGGGCCCCGTCCCCAACTTCCATTGCCTGT	37	1	3	1653121-1653142|1653121-1653142|1653121-1653142	NC_002745.2_1137227-1137206|NC_002745.2_2054581-2054602|NC_002745.2_2054698-2054719	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|49aa|down_3|NC_002745.2_1657151_1657298_-,NA|43aa|down_8|NC_002745.2_1660334_1660463_-	NA|208aa|up_9|NC_002745.2_1641683_1642307_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NC_002745.2_1642306_1643575_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NC_002745.2_1643586_1644510_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NC_002745.2_1644512_1645151_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NC_002745.2_1645435_1645744_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NC_002745.2_1645758_1646187_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NC_002745.2_1646190_1646451_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NC_002745.2_1646513_1649144_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NC_002745.2_1649486_1651964_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NC_002745.2_1651965_1652634_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NC_002745.2_1653328_1654447_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NC_002745.2_1654447_1655590_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NC_002745.2_1655901_1656915_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NC_002745.2_1657151_1657298_-	NA	NA|61aa|down_4|NC_002745.2_1657337_1657520_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NC_002745.2_1657619_1658042_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NC_002745.2_1658126_1659401_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NC_002745.2_1659561_1660335_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NC_002745.2_1660334_1660463_-	NA	NA|589aa|down_9|NC_002745.2_1660795_1662562_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_000009645.1_ASM964v1	NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	8	2054612-2054693	7	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	GGCCCCCACCCCAACTTACATTGT	24	1	5	2054636-2054669|2054636-2054669|2054636-2054669|2054636-2054669|2054636-2054669	NC_002745.2_818106-818139|NC_002745.2_1137117-1137084|NC_002745.2_1745352-1745319|NC_002745.2_1353198-1353231|NC_002745.2_2774105-2774138	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|114aa|up_7|NC_002745.2_2046356_2046698_+,NA|61aa|up_6|NC_002745.2_2046901_2047084_+,NA|81aa|up_4|NC_002745.2_2048177_2048420_+,NA|114aa|down_6|NC_002745.2_2062500_2062842_-,NA|193aa|down_9|NC_002745.2_2063658_2064237_-	NA|238aa|up_9|NC_002745.2_2044689_2045403_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	DEDDh|311aa|up_8|NC_002745.2_2045418_2046351_+	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|114aa|up_7|NC_002745.2_2046356_2046698_+	NA	NA|61aa|up_6|NC_002745.2_2046901_2047084_+	NA	NA|328aa|up_5|NC_002745.2_2047183_2048167_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|81aa|up_4|NC_002745.2_2048177_2048420_+	NA	NA|346aa|up_3|NC_002745.2_2048482_2049520_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NC_002745.2_2050638_2051655_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NC_002745.2_2051676_2052732_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NC_002745.2_2053167_2054391_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NC_002745.2_2054834_2056142_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|241aa|down_1|NC_002745.2_2057158_2057881_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|267aa|down_2|NC_002745.2_2058049_2058850_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|187aa|down_3|NC_002745.2_2059636_2060197_+	cd15783, SA1633_like, Uncharacterized protein family conserved in Staphylococci	NA|235aa|down_4|NC_002745.2_2061075_2061780_+	PRK13038, PRK13038, superantigen-like protein; Reviewed	NA|190aa|down_5|NC_002745.2_2061934_2062504_-	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|114aa|down_6|NC_002745.2_2062500_2062842_-	NA	NA|176aa|down_7|NC_002745.2_2062844_2063372_-	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane]	NA|73aa|down_8|NC_002745.2_2063422_2063641_-	pfam16722, SAPIS-gp6, Pathogenicity island protein gp6 in Staphylococcus	NA|193aa|down_9|NC_002745.2_2063658_2064237_-	NA
GCF_000009645.1_ASM964v1	NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	9	2070257-2070345	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|114aa|up_9|NC_002745.2_2064248_2064590_-,NA|127aa|up_7|NC_002745.2_2065677_2066058_-,NA|70aa|up_3|NC_002745.2_2069353_2069563_-,NA|49aa|up_2|NC_002745.2_2069555_2069702_-,NA	NA|114aa|up_9|NC_002745.2_2064248_2064590_-	NA	NA|214aa|up_8|NC_002745.2_2065039_2065681_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_7|NC_002745.2_2065677_2066058_-	NA	NA|570aa|up_6|NC_002745.2_2066367_2068077_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_5|NC_002745.2_2068090_2068960_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|109aa|up_4|NC_002745.2_2069024_2069351_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|70aa|up_3|NC_002745.2_2069353_2069563_-	NA	NA|49aa|up_2|NC_002745.2_2069555_2069702_-	NA	NA|106aa|up_1|NC_002745.2_2069698_2070016_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NC_002745.2_2070020_2070239_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NC_002745.2_2070411_2071086_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NC_002745.2_2071099_2072272_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NC_002745.2_2072340_2073957_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NC_002745.2_2074032_2074317_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NC_002745.2_2074491_2075235_+	pfam02517, Abi, CAAX protease self-immunity	NA|416aa|down_5|NC_002745.2_2075259_2076507_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|NC_002745.2_2076703_2077330_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|NC_002745.2_2077690_2078476_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|NC_002745.2_2079075_2079210_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_9|NC_002745.2_2079445_2080009_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
GCF_000009645.1_ASM964v1	NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	10	2206128-2206208	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|126aa|up_2|NC_002745.2_2201982_2202360_-,NA|35aa|down_0|NC_002745.2_2206543_2206648_-,NA|53aa|down_1|NC_002745.2_2207327_2207486_+	NA|313aa|up_9|NC_002745.2_2194551_2195490_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_8|NC_002745.2_2195925_2196591_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_7|NC_002745.2_2196742_2197063_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_6|NC_002745.2_2197064_2198042_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|221aa|up_5|NC_002745.2_2198996_2199659_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|244aa|up_4|NC_002745.2_2200192_2200924_+	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|261aa|up_3|NC_002745.2_2201049_2201832_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|126aa|up_2|NC_002745.2_2201982_2202360_-	NA	NA|631aa|up_1|NC_002745.2_2202366_2204259_-	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|362aa|up_0|NC_002745.2_2204255_2205341_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|35aa|down_0|NC_002745.2_2206543_2206648_-	NA	NA|53aa|down_1|NC_002745.2_2207327_2207486_+	NA	NA|286aa|down_2|NC_002745.2_2208143_2209001_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NC_002745.2_2209068_2209851_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NC_002745.2_2210082_2211888_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NC_002745.2_2212568_2214107_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NC_002745.2_2214141_2216274_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NC_002745.2_2216285_2216720_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NC_002745.2_2216719_2217826_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NC_002745.2_2218144_2225590_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_000009645.1_ASM964v1	NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	11	2218449-2218534	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_8|NC_002745.2_2206543_2206648_-,NA|53aa|up_7|NC_002745.2_2207327_2207486_+,NA	NA|362aa|up_9|NC_002745.2_2204255_2205341_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|35aa|up_8|NC_002745.2_2206543_2206648_-	NA	NA|53aa|up_7|NC_002745.2_2207327_2207486_+	NA	NA|286aa|up_6|NC_002745.2_2208143_2209001_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NC_002745.2_2209068_2209851_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NC_002745.2_2210082_2211888_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NC_002745.2_2212568_2214107_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NC_002745.2_2214141_2216274_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NC_002745.2_2216285_2216720_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NC_002745.2_2216719_2217826_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NC_002745.2_2225867_2227223_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NC_002745.2_2227249_2228182_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NC_002745.2_2228183_2228993_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NC_002745.2_2229181_2230090_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NC_002745.2_2236330_2237395_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NC_002745.2_2237542_2238985_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NC_002745.2_2239307_2239781_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NC_002745.2_2239879_2241223_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NC_002745.2_2241399_2242083_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NC_002745.2_2242101_2243289_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_000009645.1_ASM964v1	NC_002745	Staphylococcus aureus subsp. aureus N315, complete genome	12	2326428-2326508	11	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	17	2326453-2326483|2326453-2326483|2326453-2326483|2326453-2326483|2326453-2326483|2326453-2326483|2326453-2326483|2326453-2326483|2326453-2326483|2326453-2326483|2326453-2326483|2326453-2326483|2326453-2326483|2326453-2326483|2326453-2326483|2326453-2326483|2326453-2326483	NC_002745.2_830909-830939|NC_002745.2_830965-830995|NC_002745.2_831021-831051|NC_002745.2_831077-831107|NC_002745.2_89940-89970|NC_002745.2_387986-387956|NC_002745.2_651780-651750|NC_002745.2_831133-831163|NC_002745.2_874316-874346|NC_002745.2_1040093-1040123|NC_002745.2_1142715-1142685|NC_002745.2_1348813-1348783|NC_002745.2_1437135-1437165|NC_002745.2_1633278-1633248|NC_002745.2_1950741-1950771|NC_002745.2_2315652-2315682|NC_002745.2_2491006-2491036	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NC_002745.2_2316961_2317126_+,NA|106aa|up_8|NC_002745.2_2317370_2317688_+,NA|84aa|up_5|NC_002745.2_2322809_2323061_+,NA|62aa|up_0|NC_002745.2_2326200_2326386_+,NA	NA|55aa|up_9|NC_002745.2_2316961_2317126_+	NA	NA|106aa|up_8|NC_002745.2_2317370_2317688_+	NA	NA|1056aa|up_7|NC_002745.2_2317871_2321039_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_002745.2_2321155_2322421_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_002745.2_2322809_2323061_+	NA	NA|255aa|up_4|NC_002745.2_2323052_2323817_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_002745.2_2323978_2324419_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_002745.2_2324411_2325623_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_002745.2_2325724_2326075_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NC_002745.2_2326200_2326386_+	NA	NA|341aa|down_0|NC_002745.2_2326651_2327674_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_002745.2_2327693_2328293_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_002745.2_2328299_2328533_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_002745.2_2328538_2328985_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_002745.2_2328998_2329484_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_002745.2_2329480_2330740_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_002745.2_2330802_2331297_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_002745.2_2331298_2331805_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_002745.2_2331835_2332840_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_002745.2_2333009_2333615_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
