bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	1.1|315294|25|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	92.00	25	2	0	1	25	315463	315487	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	4e-04	34.9	1.0	GGCGAAAATACAGCTTACAATAATG	315463-315487	GGCGAAAAGTCAGCTTACAATAATG	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	1.2|315350|25|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	92.00	25	2	0	1	25	2223141	2223165	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	4e-04	34.9	1.0	TTGGAACAGCAATTTCTACAGACAA	2223141-2223165	TTGGAACACCAATTCCTACAGACAA	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	96.77	31	1	0	1	31	980925	980895	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	7e-08	47.5	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	980895-980925	GGGCCCCAACACAGAGAATTTCGAAAAGAAA	1
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	96.77	31	1	0	1	31	1019726	1019756	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	7e-08	47.5	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	1019726-1019756	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	1
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	96.77	31	1	0	1	31	2056150	2056180	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	7e-08	47.5	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	2056150-2056180	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	1
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	96.77	31	1	0	1	31	2056260	2056290	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	7e-08	47.5	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	2056260-2056290	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	1
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	96.77	31	1	0	1	31	2137882	2137912	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	7e-08	47.5	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	2137882-2137912	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	1
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	93.55	31	2	0	1	31	297275	297305	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	6e-07	44.4	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	297275-297305	TTTCTTTTCGAAATTCTCTTTGTTGGGGCCC	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	93.55	31	2	0	1	31	297333	297363	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	6e-07	44.4	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	297333-297363	TTTCTTTTCGAAATTCTCTTTGTTGGGGCCC	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	93.55	31	2	0	1	31	297391	297421	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	6e-07	44.4	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	297391-297421	TTTCTTTTCGAAATTCTCTTTGTTGGGGCCC	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	93.55	31	2	0	1	31	438250	438220	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	6e-07	44.4	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	438220-438250	GGGCCCCAACATAGAGAATTTCGAAAAGAAA	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	93.55	31	2	0	1	31	716031	716001	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	6e-07	44.4	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	716001-716031	GGGGCCCAACACAGAGAATTTCGAAAAGAAA	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	93.55	31	2	0	1	31	840326	840296	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	6e-07	44.4	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	840296-840326	GGGCCCCAACAAAGAGAATTTCGAAAAGAAA	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	93.55	31	2	0	1	31	931556	931586	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	6e-07	44.4	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	931556-931586	TTTCTTTTCGAAATTCTCTATGTTGGGGCCC	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	93.55	31	2	0	1	31	1112635	1112665	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	6e-07	44.4	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	1112635-1112665	TTTCTTTTCGAAATTCTCTTTGTTGGGGCCC	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	93.55	31	2	0	1	31	1212950	1212920	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	6e-07	44.4	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	1212920-1212950	GGGCCCCAACACAGAGAATTTCGAATAGAAA	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	93.55	31	2	0	1	31	1213004	1212974	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	6e-07	44.4	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	1212974-1213004	GGGCCCCAACACAGAGAATTTCGAATAGAAA	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	93.55	31	2	0	1	31	1852300	1852270	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	6e-07	44.4	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	1852270-1852300	GGGCCCCAACATAGAGAATTTCGAAAAGAAA	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	93.55	31	2	0	1	31	1942928	1942898	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	6e-07	44.4	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	1942898-1942928	GGGCCCCAACACAGAGAATTTCGACAAGAAA	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	93.55	31	2	0	1	31	2386544	2386574	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	6e-07	44.4	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	2386544-2386574	TTTCTTTTCGAAATTCTCTTTGTTGGGGCCC	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	3.1|886639|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	93.55	31	2	0	1	31	2431667	2431637	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	6e-07	44.4	1.0	TTTCTTTTCGAAATTTTCTGTGTTGGGGCCC	2431637-2431667	GGGCCCCAACACAGAGAATTTCAAAAAGAAA	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	4.1|935988|31|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	93.55	31	2	0	1	31	881066	881036	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	6e-07	44.4	1.0	AAGAACCAATACATAATAAAGCATAAGTGAT	881036-881066	ATCACTAATGATTTATTATGTATTGGTTCTT	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	7.1|1942971|26|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	100.00	26	0	0	1	26	2056222	2056197	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	2e-06	42.8	1.0	AGAATTTCAAAAAAGAAATTCTACAG	2056197-2056222	CTGTAGAATTTCTTTTTTGAAATTCT	0
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	10.1|2431749|26|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	100.00	26	0	0	1	26	1732428	1732403	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	2e-06	42.8	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	1732403-1732428	CCGCCAGCTTCTATGTTGGGGCCCCG	0
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	10.1|2431749|26|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	96.15	26	1	0	1	26	931645	931620	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	931620-931645	CCGTCAGCTTCTATGTTGGGGCCCCG	1
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	10.1|2431749|26|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	92.31	26	2	0	1	26	935765	935790	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	935765-935790	CGGGGCCCCAACATAGTAGCAGGCGG	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	10.1|2431749|26|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	92.31	26	2	0	1	26	980700	980725	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	980700-980725	CGGGGCCCCAACACAGAAGCTGGTGG	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	10.1|2431749|26|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	92.31	26	2	0	1	26	1417405	1417430	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	1417405-1417430	CGGGGCCCCAACACAGAAACTGGCGG	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	10.1|2431749|26|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	92.31	26	2	0	1	26	2223179	2223204	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	2223179-2223204	CGGGGCCCCAACACAAAAGCTGGCGG	2
NC_017333	Staphylococcus aureus subsp. aureus ST398, complete genome	10.1|2431749|26|NC_017333|CRISPRCasFinder	NC_017333.1	Staphylococcus aureus subsp. aureus ST398, complete genome	92.31	26	2	0	1	26	2563596	2563571	315263-315462|724389-724497|886613-886695|935963-936043|1602708-1602803|1854733-1854815|1942937-1943030|2212067-2212279|2267698-2267848|2431719-2431804|2548135-2548229|2607860-2607954|2635805-2635915	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	2563571-2563596	CCGCCAGCTACTGTGTTGGGGCCCCG	2
