The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_011274	Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91, complete genome	4658697	1262954	1339908	4658697	lysis,holin,protease,integrase,terminase,tail,portal	Enterobacteria_phage(29.79%)	81	1305308:1305326	1314915:1314933
WP_000087636.1|1262954_1264034_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.5	3.0e-101
WP_001575998.1|1264008_1264287_-	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	37.5	1.4e-10
WP_000743301.1|1264347_1264776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000280163.1|1264874_1265060_-	DUF1187 family protein	NA	NA	NA	NA	NA
WP_001126031.1|1265106_1265937_-	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	1.3e-104
WP_000023718.1|1265929_1268620_-	exodeoxyribonuclease VIII	NA	Q9QF34	Lambdoid_phage	72.5	5.7e-117
WP_000799627.1|1268760_1269096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000682660.1|1269171_1269378_-	cell division inhibitor protein	NA	I6PBM9	Cronobacter_phage	45.6	3.0e-10
WP_000103933.1|1269381_1269657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158001424.1|1269991_1270222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001574209.1|1270663_1271062_-	helix-turn-helix domain-containing protein	NA	K7PH19	Enterobacteria_phage	56.0	1.2e-18
WP_001033913.1|1271160_1271415_+	helix-turn-helix transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	62.1	9.1e-17
WP_001574210.1|1271401_1271896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000729536.1|1271942_1272941_+	DUF1376 domain-containing protein	NA	A0A0U2RT81	Escherichia_phage	67.3	4.1e-121
WP_158000546.1|1272852_1273395_+	replication protein	NA	A0A0U2JGJ0	Escherichia_phage	75.5	4.1e-67
WP_000089414.1|1273407_1273803_+	DUF977 family protein	NA	A0A088CBK9	Shigella_phage	38.1	2.9e-17
WP_000529512.1|1274089_1275220_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_001237395.1|1275616_1277596_+	MBL fold metallo-hydrolase	NA	A0A2P0VMX1	Tetraselmis_virus	46.3	1.9e-162
WP_000911593.1|1278284_1278533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000940753.1|1278596_1279196_+	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	82.9	4.7e-96
WP_000784710.1|1279192_1279420_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	66.7	2.2e-14
WP_001097218.1|1279549_1280239_+	antitermination protein	NA	I6PDF8	Cronobacter_phage	54.9	2.1e-60
WP_001675188.1|1280335_1280860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798704.1|1281233_1281683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001576005.1|1282043_1282730_-	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM0	Phage_Gifsy-2	99.1	1.1e-130
WP_001574216.1|1283005_1283335_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_000984586.1|1283318_1283771_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
WP_001541990.1|1283788_1284268_+|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
WP_000371784.1|1284475_1285009_+	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
WP_000989239.1|1284965_1287104_+|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.6	7.6e-290
WP_000196190.1|1287100_1287307_+	hypothetical protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
WP_001009209.1|1287303_1288851_+|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	64.3	1.3e-177
WP_010989008.1|1288774_1290856_+|protease	Clp protease ClpP	protease	A0A291AWT6	Escherichia_phage	69.5	4.8e-265
WP_001107906.1|1290946_1291270_+	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	60.4	2.9e-28
WP_000774239.1|1291262_1291562_+	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
WP_000453193.1|1291542_1292109_+|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	95.7	2.1e-13
WP_000196703.1|1292105_1292507_+|tail	tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	2.0e-42
WP_000132759.1|1292518_1293268_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.2	2.4e-89
WP_000478861.1|1293313_1293712_+|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	6.6e-30
WP_010989009.1|1293708_1294038_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
WP_077904894.1|1294117_1297105_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.0	1.1e-265
WP_000978295.1|1297101_1297434_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	2.6e-35
WP_000725267.1|1297532_1298030_+	Ail/Lom family outer membrane beta-barrel protein	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
WP_000877926.1|1298146_1298680_-	superoxide dismutase [Cu-Zn]	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
WP_001152416.1|1298769_1299465_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.0e-89
WP_000606352.1|1299474_1300206_+|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	75.6	1.0e-113
WP_001576012.1|1300109_1300814_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	63.1	2.4e-67
WP_000178848.1|1304277_1304520_+	hypothetical protein	NA	NA	NA	NA	NA
1305308:1305326	attL	TCCGGCACTGACTGGTACG	NA	NA	NA	NA
WP_000143173.1|1306540_1307110_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	91.0	1.5e-96
WP_000161702.1|1307311_1308034_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_001536069.1|1308513_1309314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000622159.1|1310258_1310528_-|integrase	tyrosine-type recombinase/integrase	integrase	K7PHK0	Enterobacteria_phage	47.8	2.7e-11
WP_023891551.1|1311171_1311666_-	hypothetical protein	NA	A0A0U2I1R6	Escherichia_phage	71.6	5.7e-23
WP_001013467.1|1311855_1312086_+	hypothetical protein	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
WP_000789530.1|1312928_1313096_-	lytic enzyme	NA	NA	NA	NA	NA
WP_001576014.1|1313160_1313349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000348536.1|1313403_1313895_+	DUF1441 family protein	NA	Q9EYD0	Enterobacteria_phage	55.0	1.8e-40
WP_001687735.1|1315999_1316500_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	77.4	1.5e-63
1314915:1314933	attR	TCCGGCACTGACTGGTACG	NA	NA	NA	NA
WP_001576015.1|1316596_1316797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457876.1|1317366_1317492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000951652.1|1318005_1318152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000848072.1|1318639_1319254_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_000480735.1|1319263_1319422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001233445.1|1319554_1320469_-	DMT family transporter	NA	NA	NA	NA	NA
WP_001576018.1|1323608_1323749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001576019.1|1323914_1324184_-	hypothetical protein	NA	B6SCX2	Bacteriophage	47.9	3.1e-07
WP_001025518.1|1324556_1324976_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000030934.1|1325348_1325825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000422882.1|1326154_1326550_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	9.2e-16
WP_000182072.1|1327233_1327956_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
WP_001134856.1|1328240_1328405_+	membrane protein	NA	NA	NA	NA	NA
WP_000986172.1|1328628_1329279_+	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	50.9	5.5e-58
WP_000457838.1|1329297_1329489_-	YebW family protein	NA	NA	NA	NA	NA
WP_024131108.1|1329599_1329836_-	DUF1480 family protein	NA	NA	NA	NA	NA
WP_001531515.1|1329953_1331393_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
WP_024131472.1|1331470_1334104_-	PqiB family protein	NA	NA	NA	NA	NA
WP_001207294.1|1334072_1335356_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA	NA
WP_001674914.1|1335484_1335982_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_000431401.1|1336079_1336766_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_001091237.1|1336785_1338834_+	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
WP_000984498.1|1339026_1339908_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 2
NC_011274	Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91, complete genome	4658697	2166568	2177075	4658697		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126349.1|2166568_2167882_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565913.1|2167908_2168988_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.7e-16
WP_000648783.1|2168992_2169766_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018223.1|2169781_2170756_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973709.1|2170761_2171313_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.3e-52
WP_000857535.1|2171313_2172192_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.1e-108
WP_001023658.1|2172239_2173139_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
WP_000697846.1|2173138_2174224_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_000981469.1|2174600_2175494_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001144951.1|2175671_2177075_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	4.0e-21
>prophage 3
NC_011274	Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91, complete genome	4658697	2244267	2253436	4658697	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
WP_000195340.1|2244267_2246301_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
WP_000703145.1|2246541_2247000_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	6.4e-53
WP_000950414.1|2247756_2248224_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	89.7	4.3e-73
WP_000598635.1|2248270_2248990_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272845.1|2248986_2250672_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
WP_001240413.1|2250894_2251626_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	1.3e-100
WP_001261696.1|2251685_2251793_+	protein YohO	NA	NA	NA	NA	NA
WP_000824853.1|2251773_2252505_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569176.1|2252488_2253436_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	1.6e-10
>prophage 4
NC_011274	Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91, complete genome	4658697	2489740	2495821	4658697		Salmonella_virus(50.0%)	6	NA	NA
WP_000377778.1|2489740_2490682_+	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	87.8	2.0e-146
WP_001576268.1|2491924_2492314_+	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	85.6	1.1e-50
WP_000703599.1|2492282_2492537_+	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_000400615.1|2492554_2494477_+	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.2	3.6e-299
WP_105789228.1|2495466_2495610_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	82.9	1.7e-12
WP_115335088.1|2495548_2495821_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	68.6	8.3e-08
