The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_009004	Lactococcus lactis subsp. cremoris MG1363, complete genome	2529478	32973	85063	2529478	tRNA,transposase,bacteriocin,integrase	Lactococcus_phage(70.97%)	61	32370:32394	51759:51783
32370:32394	attL	ACGGCATTCAATCAGTGTTTTTTTG	NA	NA	NA	NA
WP_011834138.1|32973_33297_-	sigma-70 family RNA polymerase sigma factor	NA	Q9AZI1	Lactococcus_phage	82.2	1.2e-42
WP_041931235.1|33397_33730_-	hypothetical protein	NA	Q9AZE0	Lactococcus_phage	75.0	3.4e-40
WP_011834140.1|33805_34108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834141.1|34424_35006_-	hypothetical protein	NA	Q9AZI4	Lactococcus_phage	89.6	7.0e-89
WP_011834142.1|35241_36870_-	DNA primase	NA	Q9AZI5	Lactococcus_phage	98.5	0.0e+00
WP_011834143.1|36880_37675_-	bifunctional DNA primase/polymerase	NA	Q9AZI6	Lactococcus_phage	91.7	2.8e-144
WP_011834144.1|37671_38007_-	hypothetical protein	NA	Q9AZI7	Lactococcus_phage	95.4	4.2e-54
WP_011834146.1|38254_38494_-	hypothetical protein	NA	Q9AZJ0	Lactococcus_phage	92.4	2.2e-36
WP_011834147.1|38535_38817_-	hypothetical protein	NA	Q9AZJ1	Lactococcus_phage	95.7	1.2e-46
WP_011834148.1|38828_39254_-	hypothetical protein	NA	Q9AZF1	Lactococcus_phage	92.2	2.8e-71
WP_011834149.1|39258_39453_-	DUF1655 domain-containing protein	NA	Q9AZF2	Lactococcus_phage	93.8	5.7e-27
WP_011834150.1|39568_39754_-	helix-turn-helix transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	42.6	1.2e-05
WP_011834151.1|39836_40163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834152.1|40518_40734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041931236.1|40889_41282_+	helix-turn-helix domain-containing protein	NA	A5GZ65	Lactococcus_phage	60.9	1.4e-37
WP_011834154.1|41311_41866_+	hypothetical protein	NA	Q9AZJ8	Lactococcus_phage	92.4	2.4e-102
WP_011834155.1|41976_42207_+	hypothetical protein	NA	Q9AZK0	Lactococcus_phage	85.5	1.2e-15
WP_011834156.1|42279_42474_+	hypothetical protein	NA	Q9AZK1	Lactococcus_phage	98.4	1.0e-28
WP_014734881.1|42726_42984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834157.1|43097_44423_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_011834158.1|44504_44711_+	hypothetical protein	NA	Q9AZK3	Lactococcus_phage	64.7	6.7e-18
WP_011834159.1|45200_45443_+	hypothetical protein	NA	Q9AZK2	Lactococcus_phage	98.8	5.1e-33
WP_010905058.1|45578_45803_+	hypothetical protein	NA	Q9AZK3	Lactococcus_phage	100.0	4.5e-36
WP_003331415.1|46466_47690_+|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	100.0	4.9e-233
WP_003331414.1|47701_48460_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	100.0	5.3e-137
WP_011834160.1|48561_48888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905061.1|49621_49786_+|bacteriocin	bacteriocin	bacteriocin	Q9AZK6	Lactococcus_phage	100.0	7.9e-22
WP_010905062.1|49907_50213_+|bacteriocin	bacteriocin immunity protein	bacteriocin	Q9AZK7	Lactococcus_phage	100.0	8.3e-49
WP_011834162.1|50462_51647_+|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	99.5	3.6e-225
WP_014734884.1|52155_52869_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
51759:51783	attR	ACGGCATTCAATCAGTGTTTTTTTG	NA	NA	NA	NA
WP_011834164.1|53630_53996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834165.1|54400_54892_+	hypothetical protein	NA	A0A1S5SAH9	Streptococcus_phage	27.7	2.4e-05
WP_014734885.1|54929_55283_+	DUF1648 domain-containing protein	NA	NA	NA	NA	NA
WP_011675106.1|55404_55563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041931237.1|56003_56453_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_050750505.1|56531_56777_+	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_011834168.1|56869_58492_-	SulP family inorganic anion transporter	NA	NA	NA	NA	NA
WP_003138385.1|58701_59877_-|transposase	IS256-like element IS905 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	32.3	2.5e-32
WP_011834169.1|60022_60544_+	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	42.1	6.0e-31
WP_011834170.1|60872_62048_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_011834171.1|62145_62901_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_011834172.1|63014_63896_+	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011834173.1|64006_65242_+	MFS transporter	NA	NA	NA	NA	NA
WP_011834174.1|65272_66691_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.2	1.0e-40
WP_011834175.1|66909_68502_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_011834176.1|68494_69475_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
WP_011834177.1|69477_70602_-	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA	NA
WP_011834178.1|70690_71692_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_011834179.1|71884_72739_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	30.4	1.7e-11
WP_011834180.1|72817_73468_-	HD domain-containing protein	NA	A0A1S5XYU7	Kurlavirus	32.9	2.0e-15
WP_011834181.1|73517_73844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834182.1|73936_74962_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_011834183.1|75460_75898_+	OsmC family protein	NA	NA	NA	NA	NA
WP_011834184.1|76059_77373_+	APC family permease	NA	NA	NA	NA	NA
WP_011834185.1|77432_77783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834186.1|77842_78838_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_011834187.1|78940_79753_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_011834188.1|80128_81766_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	25.7	5.3e-49
WP_011834189.1|82265_82520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834190.1|82639_83464_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_164845598.1|83679_85063_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	41.8	1.1e-55
>prophage 2
NC_009004	Lactococcus lactis subsp. cremoris MG1363, complete genome	2529478	400610	412766	2529478	tRNA	Streptococcus_phage(30.0%)	14	NA	NA
WP_011675460.1|400610_400928_+	thioredoxin family protein	NA	A0A0K2FIM3	Achromobacter_phage	31.9	9.0e-06
WP_011834456.1|401033_401660_+|tRNA	DUF4479 and tRNA-binding domain-containing protein	tRNA	NA	NA	NA	NA
WP_011834457.1|401821_403162_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011834458.1|403252_403642_+	single-stranded DNA-binding protein	NA	A0A2I2MUI5	uncultured_Caudovirales_phage	42.3	2.0e-23
WP_011834459.1|403760_404045_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	44.1	1.1e-13
WP_011834460.1|404131_405760_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.4	5.5e-155
WP_011675466.1|405809_406622_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	38.1	1.5e-33
WP_173249647.1|406812_408168_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	32.9	1.4e-31
WP_003131580.1|408232_408934_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.7	1.2e-42
WP_011834462.1|409111_409747_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	65.5	4.5e-73
WP_011834463.1|409879_410740_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	45.2	1.1e-64
WP_011834464.1|410789_411572_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_011834465.1|411564_411891_+	DNA replication initiation control protein YabA	NA	NA	NA	NA	NA
WP_011834466.1|411890_412766_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	66.4	7.1e-101
>prophage 3
NC_009004	Lactococcus lactis subsp. cremoris MG1363, complete genome	2529478	579633	634046	2529478	tRNA,protease,transposase,integrase	Lactococcus_phage(35.0%)	46	607384:607443	612848:612955
WP_011675765.1|579633_580299_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	29.8	2.3e-19
WP_011834608.1|580429_581314_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_011834609.1|581459_582128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675768.1|582292_583195_+	SPFH domain-containing protein	NA	A0A1V0SL90	Klosneuvirus	35.2	1.8e-35
WP_011834610.1|583443_584460_-|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	42.9	4.0e-71
WP_011834611.1|584680_585172_-	hypothetical protein	NA	Q9AZF8	Lactococcus_phage	93.3	3.6e-78
WP_011834612.1|585447_585657_-	hypothetical protein	NA	Q9AZF6	Lactococcus_phage	83.6	2.3e-26
WP_162466999.1|585724_586003_-	hypothetical protein	NA	Q9AZW4	Lactococcus_phage	69.6	5.5e-23
WP_162467000.1|585941_586232_-	hypothetical protein	NA	Q9G0E8	Lactococcus_phage	81.8	1.2e-12
WP_014734944.1|586212_586389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834615.1|586682_588290_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_161769936.1|588213_589146_+	glycosyltransferase family 2 protein	NA	V9QJB1	Oenococcus_phage	49.7	6.6e-81
WP_011834617.1|589411_589903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834618.1|589915_590290_-	PH domain-containing protein	NA	A5GYQ0	Lactococcus_phage	80.6	7.1e-50
WP_011834619.1|590634_590982_-	XRE family transcriptional regulator	NA	A0A182BQC8	Lactococcus_phage	76.3	3.1e-44
WP_011834620.1|591747_592671_+	ribonuclease Z	NA	NA	NA	NA	NA
WP_014734945.1|592663_593365_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011834622.1|593537_595766_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	31.3	2.3e-79
WP_011834623.1|595889_596402_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.0	5.3e-32
WP_011834624.1|596617_597184_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_041931175.1|597319_598960_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_011834626.1|599020_599491_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_101928132.1|601030_602177_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
WP_011834627.1|602408_602864_+	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011834628.1|602853_605304_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	33.9	2.4e-122
WP_011834629.1|605438_605996_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010905473.1|606183_607485_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	87.6	4.0e-217
607384:607443	attL	GACCGTATGGCTAAATACAACCAATTGCTTCGTATTGAAGACCAATTGGCTGAAGTTGCT	NA	NA	NA	NA
WP_011834630.1|607573_608509_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A142F1N9	Bacillus_phage	27.5	4.0e-25
WP_011834631.1|608635_609268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_102032783.1|610647_611759_-|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	4.7e-49
WP_011834633.1|611838_612519_+	abortive infection protein	NA	NA	NA	NA	NA
WP_011834634.1|613052_613724_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.9e-29
612848:612955	attR	GACCGTATGGCTAAATACAACCAATTGCTTCGTATTGAAGACCAATTGGCTGAAGTTGCTCAATACAAAGGTCTTAAAGCATTCTACAACCTTAAAAAATAAGGTTTA	NA	NA	NA	NA
WP_011834635.1|613725_614799_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011834636.1|614810_615380_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011834637.1|615569_617093_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
WP_011834638.1|617286_618204_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_011834639.1|618463_620827_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	31.6	4.7e-107
WP_011834640.1|620955_621615_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_011834641.1|621617_622835_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_003129585.1|622831_622978_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_011834642.1|623354_624617_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_011834643.1|624721_628135_+	pyruvate carboxylase	NA	NA	NA	NA	NA
WP_011834644.1|628260_629586_+	citrate/2-methylcitrate synthase	NA	NA	NA	NA	NA
WP_011834645.1|629582_632129_+	aconitate hydratase AcnA	NA	NA	NA	NA	NA
WP_011834646.1|632148_633387_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_011834647.1|633446_634046_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	52.6	7.1e-52
>prophage 4
NC_009004	Lactococcus lactis subsp. cremoris MG1363, complete genome	2529478	643148	699801	2529478	transposase,bacteriocin	Staphylococcus_phage(16.67%)	52	NA	NA
WP_102032784.1|643148_644260_-|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	2.8e-49
WP_102032798.1|644314_645115_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_011834657.1|645201_646551_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_011834658.1|646766_647039_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_011834662.1|649641_650532_-|transposase	IS982-like element ISLla2 family transposase	transposase	NA	NA	NA	NA
WP_041931256.1|650981_654059_+	type I restriction endonuclease subunit R	NA	NA	NA	NA	NA
WP_014734957.1|654058_655678_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	49.7	3.2e-123
WP_063283236.1|656261_656894_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	29.6	8.1e-14
WP_003131454.1|657079_658030_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_011834666.1|659930_660578_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
WP_011834667.1|660768_661965_-	amidohydrolase	NA	NA	NA	NA	NA
WP_011834668.1|663029_664286_+	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_101812836.1|664403_664547_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_011834669.1|665113_665431_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011834671.1|665907_666210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834672.1|666206_666383_-|bacteriocin	lactococcin family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_101913470.1|666519_666747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834674.1|666945_667563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834675.1|667839_668520_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	82.7	4.2e-109
WP_011834676.1|668848_669088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834677.1|669247_669745_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011834678.1|670032_670245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834679.1|671498_671690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003140242.1|671741_671918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834680.1|672064_672550_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003331415.1|672798_674022_+|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	100.0	4.9e-233
WP_003331414.1|674033_674792_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	100.0	5.3e-137
WP_011834681.1|676554_676701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834682.1|677107_677389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834683.1|677972_678140_+|bacteriocin	lactococcin family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011834671.1|678146_678449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834685.1|678700_680563_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	36.0	4.7e-102
WP_011834687.1|681268_681496_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_031297113.1|681544_682090_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_011834689.1|682175_682865_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_011834692.1|683541_684558_+	murein tripeptide/oligopeptide ABC transporter ATP binding protein OppD	NA	G9BWD6	Planktothrix_phage	32.3	3.8e-21
WP_010906164.1|684554_685514_+	murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF	NA	G3M9Y6	Bacillus_virus	31.1	1.6e-13
WP_010906163.1|685494_686454_+	murein tripeptide/oligopeptide ABC transporter permease OppB	NA	NA	NA	NA	NA
WP_003140250.1|686463_687348_+	murein tripeptide/oligopeptide ABC transporter permease OppC	NA	NA	NA	NA	NA
WP_011834693.1|687457_689260_+	oligopeptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011834694.1|689384_691268_+	endopeptidase PepO	NA	E3T4I7	Cafeteria_roenbergensis_virus	31.1	1.8e-72
WP_011834695.1|691570_692890_+|transposase	IS4-like element IS1675 family transposase	transposase	NA	NA	NA	NA
WP_011834696.1|693317_693521_+|bacteriocin	lactococcin family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011834697.1|693513_693837_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_011834698.1|694245_694527_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_010890674.1|694697_695000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834700.1|694992_695268_-	DUF2089 family protein	NA	NA	NA	NA	NA
WP_041931261.1|695524_695842_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011834702.1|695838_696666_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834703.1|696900_697455_+	recombinase family protein	NA	A0A286S1P7	Klebsiella_phage	49.7	1.8e-41
WP_011834704.1|697798_698404_-	AbiV family abortive infection protein	NA	NA	NA	NA	NA
WP_102032785.1|698692_699801_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	36.5	3.3e-34
>prophage 5
NC_009004	Lactococcus lactis subsp. cremoris MG1363, complete genome	2529478	775432	821910	2529478	transposase,head,protease,capsid,portal,terminase,bacteriocin,integrase,holin,tail	Lactococcus_phage(98.31%)	66	766402:766418	820943:820959
766402:766418	attL	TTTTTAATATAAAAAAC	NA	NA	NA	NA
WP_014734979.1|775432_776911_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.1	5.9e-15
WP_041168731.1|776913_777855_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_011834767.1|777866_778841_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011834768.1|779031_780165_-|integrase	site-specific integrase	integrase	A0A059NT56	Lactococcus_phage	100.0	1.2e-204
WP_011834769.1|780290_780917_-	DUF308 domain-containing protein	NA	A0A059NT54	Lactococcus_phage	100.0	1.2e-70
WP_011834770.1|780973_781411_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059NT76	Lactococcus_phage	100.0	6.3e-82
WP_011834771.1|781407_781905_-	helix-turn-helix transcriptional regulator	NA	A0A059NT51	Lactococcus_phage	100.0	2.2e-83
WP_011834772.1|782306_783116_-	TIGR02391 family protein	NA	A0A059NT45	Lactococcus_phage	100.0	2.8e-152
WP_003129361.1|783269_783521_+	helix-turn-helix transcriptional regulator	NA	A0A059NT65	Lactococcus_phage	100.0	1.9e-38
WP_011834773.1|783535_783754_+	hypothetical protein	NA	A0A059NT62	Lactococcus_phage	100.0	8.6e-32
WP_011834774.1|783763_784477_+	phage antirepressor Ant	NA	A0A059NT90	Lactococcus_phage	100.0	7.0e-131
WP_011834775.1|784489_784726_+	helix-turn-helix domain-containing protein	NA	A0A059NT59	Lactococcus_phage	100.0	4.3e-37
WP_011834776.1|784879_785113_+	hypothetical protein	NA	A0A059NT46	Lactococcus_phage	100.0	1.8e-35
WP_011834777.1|785067_785346_-	hypothetical protein	NA	A0A059NT68	Lactococcus_phage	100.0	1.1e-47
WP_002819828.1|785451_785700_+	hypothetical protein	NA	A0A059NT64	Lactococcus_phage	100.0	1.0e-36
WP_011834778.1|785696_785873_+	putative transcriptional regulator	NA	A0A059NT92	Lactococcus_phage	100.0	2.2e-25
WP_011834779.1|785977_786496_+	host-nuclease inhibitor Gam family protein	NA	A0A059NT60	Lactococcus_phage	100.0	6.9e-88
WP_011834780.1|786504_787224_+	AAA family ATPase	NA	A0A059NT47	Lactococcus_phage	100.0	4.4e-133
WP_011834781.1|787223_787727_+	hypothetical protein	NA	A0A059NT72	Lactococcus_phage	100.0	9.1e-93
WP_011834782.1|787862_788702_+	phage replisome organiser protein	NA	A0A059NT67	Lactococcus_phage	100.0	1.1e-132
WP_011834783.1|788711_789596_+	ATP-binding protein	NA	A0A059NT94	Lactococcus_phage	100.0	1.6e-164
WP_011834784.1|789592_789757_+	hypothetical protein	NA	A0A059NT61	Lactococcus_phage	100.0	1.9e-23
WP_014734980.1|789746_790166_+	hypothetical protein	NA	A0A059NT48	Lactococcus_phage	100.0	4.6e-74
WP_011834786.1|790166_790406_+	DUF1031 domain-containing protein	NA	A0A059NT75	Lactococcus_phage	100.0	1.4e-38
WP_011834787.1|790511_791036_+	hypothetical protein	NA	A0A059NT70	Lactococcus_phage	100.0	5.5e-93
WP_011676933.1|791049_791256_+	DUF1125 domain-containing protein	NA	A0A1P8BL00	Lactococcus_phage	100.0	2.4e-31
WP_011834788.1|791248_791797_+	DUF1642 domain-containing protein	NA	A0A059NT63	Lactococcus_phage	100.0	2.2e-100
WP_011834789.1|791793_792213_+	dUTP diphosphatase	NA	A0A059NT49	Lactococcus_phage	100.0	3.9e-73
WP_011834790.1|792215_792554_+	hypothetical protein	NA	A0A059NT79	Lactococcus_phage	100.0	8.6e-55
WP_011834791.1|792550_793231_+	hypothetical protein	NA	A0A059NT73	Lactococcus_phage	100.0	1.3e-129
WP_011834792.1|793310_793529_+	hypothetical protein	NA	A0A059NT96	Lactococcus_phage	100.0	2.9e-35
WP_011834793.1|793525_793699_+	DUF1660 domain-containing protein	NA	A0A059NT66	Lactococcus_phage	100.0	6.4e-30
WP_003131928.1|794053_794479_+	DUF722 domain-containing protein	NA	A0A059NT50	Lactococcus_phage	100.0	1.3e-76
WP_003331415.1|794655_795879_+|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	100.0	4.9e-233
WP_003331414.1|795890_796649_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	100.0	5.3e-137
WP_011834794.1|797029_797542_+|terminase	terminase small subunit	terminase	A0A059NT97	Lactococcus_phage	100.0	6.0e-84
WP_011834795.1|797531_798767_+|terminase	PBSX family phage terminase large subunit	terminase	A0A059NT69	Lactococcus_phage	100.0	2.6e-242
WP_011834796.1|798776_800285_+|portal	phage portal protein	portal	A0A059NT52	Lactococcus_phage	100.0	3.9e-264
WP_014734981.1|800241_800406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_102032787.1|800435_800678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834797.1|800674_800962_+|protease	ribosomal-processing cysteine protease Prp	protease	A0A059NT85	Lactococcus_phage	100.0	1.7e-48
WP_011834798.1|800967_802065_+|capsid	minor capsid protein	capsid	A0A059NT80	Lactococcus_phage	100.0	4.3e-204
WP_011834799.1|802097_802628_+	hypothetical protein	NA	A0A059NT98	Lactococcus_phage	100.0	4.9e-97
WP_011834800.1|802687_802846_+	hypothetical protein	NA	A0A059NT71	Lactococcus_phage	100.0	2.6e-22
WP_011834801.1|802842_803115_-	DUF3892 domain-containing protein	NA	A0A059NT53	Lactococcus_phage	100.0	1.4e-39
WP_011834802.1|803291_803918_+	DUF4355 domain-containing protein	NA	A0A059NT87	Lactococcus_phage	100.0	2.7e-78
WP_011834803.1|803929_805048_+	Ig-like domain-containing protein	NA	A0A059NT82	Lactococcus_phage	100.0	1.1e-175
WP_011834804.1|805068_805401_+|head,tail	phage head-tail connector protein	head,tail	A0A059NT99	Lactococcus_phage	100.0	1.3e-55
WP_011834805.1|805381_805735_+	hypothetical protein	NA	A0A059NT74	Lactococcus_phage	100.0	4.9e-61
WP_011676912.1|805718_806267_+	hypothetical protein	NA	A0A059NT55	Lactococcus_phage	100.0	6.0e-98
WP_011834806.1|806266_806629_+	hypothetical protein	NA	A0A059NT89	Lactococcus_phage	100.0	1.0e-61
WP_011834807.1|806641_807055_+|tail	major tail protein	tail	A0A059NT84	Lactococcus_phage	100.0	1.6e-71
WP_011834808.1|807131_807542_+	hypothetical protein	NA	A0A059NTA0	Lactococcus_phage	100.0	1.3e-68
WP_014734984.1|807565_807937_+	hypothetical protein	NA	A0A059NT78	Lactococcus_phage	100.0	1.1e-47
WP_011834810.1|807968_812669_+|tail	tail protein	tail	A0A059NT57	Lactococcus_phage	100.0	0.0e+00
WP_011834811.1|812680_813046_+	hypothetical protein	NA	A0A059NT91	Lactococcus_phage	100.0	1.4e-63
WP_011834812.1|813057_815595_+	hypothetical protein	NA	A0A059NT86	Lactococcus_phage	100.0	0.0e+00
WP_011676905.1|815591_815729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834813.1|815728_817222_+	hypothetical protein	NA	A0A059NTA1	Lactococcus_phage	100.0	2.2e-280
WP_011834814.1|817302_817608_+	hypothetical protein	NA	A0A059NT81	Lactococcus_phage	100.0	2.8e-52
WP_011834815.1|817594_817819_+|holin	holin	holin	A0A059NT58	Lactococcus_phage	100.0	1.1e-34
WP_011834816.1|817815_819105_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A059NT93	Lactococcus_phage	100.0	3.3e-248
WP_011834817.1|819286_820246_+	Abi family protein	NA	A0A059NT88	Lactococcus_phage	100.0	2.2e-180
WP_173249648.1|820517_820673_+|holin	bacteriophage holin	holin	A0A059NTA2	Lactococcus_phage	98.0	2.2e-21
WP_011834819.1|821177_821600_+|bacteriocin	garvicin Q family class II bacteriocin	bacteriocin	NA	NA	NA	NA
820943:820959	attR	GTTTTTTATATTAAAAA	NA	NA	NA	NA
WP_011834820.1|821604_821910_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 6
NC_009004	Lactococcus lactis subsp. cremoris MG1363, complete genome	2529478	945824	954765	2529478	transposase	Synechococcus_phage(33.33%)	6	NA	NA
WP_102032788.1|945824_947217_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	45.0	5.9e-57
WP_011834921.1|947598_948405_+	hypothetical protein	NA	A0A1P8BMN5	Lactococcus_phage	47.6	2.2e-11
WP_011834922.1|948592_951196_+	ATP-dependent chaperone ClpB	NA	K4FB40	Cronobacter_phage	32.7	1.4e-123
WP_011834923.1|951379_952402_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	41.5	2.4e-60
WP_011676469.1|952430_952979_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	32.0	1.5e-19
WP_014734995.1|953169_954765_+	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	34.1	6.6e-12
>prophage 7
NC_009004	Lactococcus lactis subsp. cremoris MG1363, complete genome	2529478	1026183	1034978	2529478	transposase	Bacillus_phage(33.33%)	8	NA	NA
WP_011834981.1|1026183_1027737_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	37.8	3.5e-34
WP_011676390.1|1027726_1028437_-	response regulator transcription factor	NA	A0A1V0SGR9	Hokovirus	30.1	5.3e-06
WP_011676389.1|1028620_1028956_+	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_011834982.1|1029742_1030273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164845598.1|1030383_1031767_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	41.8	1.1e-55
WP_102032790.1|1031841_1032943_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	40.4	1.7e-38
WP_003331414.1|1032984_1033743_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	100.0	5.3e-137
WP_011834984.1|1033754_1034978_-|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	99.8	2.4e-232
>prophage 8
NC_009004	Lactococcus lactis subsp. cremoris MG1363, complete genome	2529478	1224963	1231444	2529478	transposase	Lactococcus_phage(83.33%)	10	NA	NA
WP_011835138.1|1224963_1225821_+	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	30.6	1.2e-28
WP_011835139.1|1226568_1226769_+	hypothetical protein	NA	Q9AZK6	Lactococcus_phage	55.8	2.6e-06
WP_003132324.1|1226899_1227100_+	cold shock domain-containing protein	NA	Q9AZD3	Lactococcus_phage	50.8	8.2e-13
WP_011835124.1|1227377_1227578_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	93.9	2.4e-28
WP_011835140.1|1228093_1228333_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_011835141.1|1228362_1228923_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_011835142.1|1228932_1229121_+	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_011835143.1|1229141_1229402_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_003331414.1|1229450_1230209_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	100.0	5.3e-137
WP_003331415.1|1230220_1231444_-|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	100.0	4.9e-233
>prophage 9
NC_009004	Lactococcus lactis subsp. cremoris MG1363, complete genome	2529478	1505889	1519571	2529478		Bacillus_virus(25.0%)	12	NA	NA
WP_011835376.1|1505889_1508364_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.8	1.8e-96
WP_011835377.1|1508688_1509138_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011835378.1|1509134_1509968_-	3'-5' exonuclease	NA	A0A0K2SUJ2	Clostridium_phage	39.4	1.2e-20
WP_014735065.1|1509960_1510497_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_011835380.1|1510603_1512538_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.2	5.4e-125
WP_011835381.1|1512816_1513458_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_011675987.1|1513631_1513850_+	redoxin NrdH	NA	C3U2K9	Lactococcus_phage	47.6	5.8e-12
WP_011835382.1|1513851_1514274_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	36.4	2.3e-12
WP_011835383.1|1514410_1516579_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	60.7	5.6e-256
WP_011675984.1|1516863_1517841_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	65.7	6.0e-117
WP_011835384.1|1517950_1518886_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011835385.1|1518878_1519571_-	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	34.8	1.2e-31
>prophage 10
NC_009004	Lactococcus lactis subsp. cremoris MG1363, complete genome	2529478	2018736	2110526	2529478	head,transposase,tRNA,protease,capsid,portal,terminase,integrase,holin,tail	Lactococcus_phage(74.19%)	111	2063322:2063344	2107500:2107522
WP_011835755.1|2018736_2020614_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_011676860.1|2020998_2021562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835756.1|2021694_2022063_-	DUF1033 family protein	NA	NA	NA	NA	NA
WP_014735129.1|2022176_2022578_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_011835758.1|2022570_2023917_-|tRNA	cysteine--tRNA ligase	tRNA	A0A2L2DK39	Acanthamoeba_polyphaga_mimivirus	30.9	8.8e-50
WP_011676864.1|2023929_2024523_-	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
WP_011835759.1|2024536_2025136_-	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_011835760.1|2025241_2026012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835761.1|2026279_2028580_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_011835762.1|2028860_2030006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835763.1|2030370_2031336_+	ribose-phosphate diphosphokinase	NA	A0A2K9L2G2	Tupanvirus	32.8	1.8e-36
WP_011676870.1|2031440_2031872_-	universal stress protein	NA	NA	NA	NA	NA
WP_041931211.1|2032171_2033296_+	cysteine desulfurase	NA	H7BUW1	unidentified_phage	37.1	3.1e-32
WP_011835765.1|2033321_2033666_+	DUF1831 domain-containing protein	NA	NA	NA	NA	NA
WP_003132374.1|2033754_2034942_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.4	2.0e-34
WP_011835766.1|2035185_2035368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011835767.1|2035426_2035543_+	DUF4044 domain-containing protein	NA	NA	NA	NA	NA
WP_011835768.1|2035602_2038401_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	26.2	8.7e-84
WP_011835770.1|2038847_2039783_-	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_014735130.1|2039839_2040631_-	RNA-binding protein	NA	NA	NA	NA	NA
WP_011676877.1|2040627_2040903_-	YggT family protein	NA	NA	NA	NA	NA
WP_011835772.1|2040902_2041493_-	cell division protein SepF	NA	NA	NA	NA	NA
WP_011835773.1|2041526_2042204_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_011835774.1|2042200_2043460_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_011835775.1|2043489_2044860_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_011835776.1|2045021_2045891_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.3	1.7e-14
WP_011835777.1|2046007_2046736_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	A0A2D1A6G0	Rhodococcus_phage	27.7	6.1e-05
WP_011835778.1|2046899_2048000_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_011835779.1|2048137_2048983_-	aldo/keto reductase	NA	A0A1V0SDE7	Indivirus	33.7	4.0e-32
WP_011835780.1|2048994_2050320_-	MFS transporter	NA	NA	NA	NA	NA
WP_011835781.1|2050434_2051313_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011835782.1|2051328_2051733_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011676889.1|2051812_2053123_-	aminopeptidase C	NA	R4TV59	Phaeocystis_globosa_virus	31.7	1.5e-62
WP_011835784.1|2053251_2053926_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_011835785.1|2053943_2054447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835787.1|2054583_2055264_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_011676893.1|2055291_2055570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835788.1|2055562_2056147_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_011835789.1|2056247_2057624_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	35.7	1.2e-30
WP_011835790.1|2057844_2058636_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	33.2	1.1e-31
WP_010906184.1|2058719_2058989_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_011835791.1|2059159_2061037_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	A0A1V0SDC3	Indivirus	32.4	9.8e-23
WP_011835792.1|2061036_2061813_-	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA	NA
WP_011835793.1|2061935_2063210_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
2063322:2063344	attL	AACGTAACTAAAAACGTAACTAA	NA	NA	NA	NA
WP_011835794.1|2064417_2065275_-	lysozyme	NA	Q8LTJ6	Lactococcus_phage	88.6	2.8e-102
WP_011835795.1|2065276_2065738_-|holin	phage holin	holin	Q8LTJ7	Lactococcus_phage	89.7	1.2e-46
WP_011835796.1|2065753_2066101_-	hypothetical protein	NA	Q38132	Lactococcus_phage	99.1	7.5e-54
WP_011835797.1|2066113_2066350_-	hypothetical protein	NA	Q38320	Lactococcus_phage	93.6	3.2e-32
WP_011835798.1|2066365_2071219_-	serine/threonine protein phosphatase	NA	Q38319	Lactococcus_phage	50.3	0.0e+00
WP_011835799.1|2071215_2072298_-|tail	phage tail component	tail	Q38318	Lactococcus_phage	73.1	1.9e-151
WP_011835800.1|2072221_2072869_-|tail	phage tail family protein	tail	Q38318	Lactococcus_phage	75.4	1.3e-86
WP_011835801.1|2072865_2078013_-|tail	phage tail tape measure protein	tail	Q8LTK2	Lactococcus_phage	91.5	0.0e+00
WP_011835802.1|2078235_2078652_-	hypothetical protein	NA	Q8LTK3	Lactococcus_phage	98.6	3.0e-65
WP_011835803.1|2078796_2079390_-|tail	tail protein	tail	Q94MA4	Lactococcus_phage	100.0	8.4e-106
WP_011835804.1|2079420_2079816_-	DUF806 family protein	NA	Q9AZS3	Lactococcus_phage	99.2	5.7e-66
WP_011835805.1|2079812_2080319_-	HK97 gp10 family phage protein	NA	Q8LTK6	Lactococcus_phage	98.2	1.3e-86
WP_011835806.1|2080320_2080671_-|head	phage head closure protein	head	Q8LTK7	Lactococcus_phage	94.8	3.4e-54
WP_011835807.1|2080645_2080969_-|head,tail	phage gp6-like head-tail connector protein	head,tail	Q94MA8	Lactococcus_phage	98.1	7.7e-53
WP_011835808.1|2081169_2082384_-|capsid	phage major capsid protein	capsid	Q9AZS7	Lactococcus_phage	99.8	3.1e-219
WP_010905934.1|2082395_2083103_-|protease	Clp protease ClpP	protease	Q9AZS8	Lactococcus_phage	100.0	1.4e-120
WP_014735131.1|2083145_2084324_-|portal	phage portal protein	portal	Q77P35	Lactococcus_phage	99.2	2.0e-223
WP_011835810.1|2084320_2084530_-	DUF1056 family protein	NA	Q9AZT0	Lactococcus_phage	98.6	1.5e-28
WP_011835811.1|2084498_2086097_-|terminase	terminase large subunit	terminase	Q8LTL2	Lactococcus_phage	97.0	6.9e-304
WP_011835812.1|2087719_2088118_-|terminase	phage terminase small subunit P27 family	terminase	Q8LTL3	Lactococcus_phage	38.8	4.9e-17
WP_011835813.1|2088299_2088818_-	HNH endonuclease	NA	Q94M78	Lactococcus_phage	97.1	2.5e-98
WP_011835814.1|2088821_2089112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835815.1|2089488_2089890_-	RinA family protein	NA	Q9AZZ1	Lactococcus_phage	99.2	1.2e-68
WP_011835816.1|2089972_2090158_-	hypothetical protein	NA	Q8LTL6	Lactococcus_phage	98.3	1.6e-26
WP_011835817.1|2090154_2090463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014735134.1|2090464_2090644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162466997.1|2090645_2090786_-	hypothetical protein	NA	Q8LTL7	Lactococcus_phage	97.8	1.7e-20
WP_003331414.1|2090894_2091653_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	100.0	5.3e-137
WP_003331415.1|2091664_2092888_-|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	100.0	4.9e-233
WP_014735135.1|2092943_2093087_-	hypothetical protein	NA	Q8LTL7	Lactococcus_phage	90.0	6.9e-14
WP_011835819.1|2093447_2093657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014735136.1|2093705_2093906_-	DUF1660 domain-containing protein	NA	A0A1P8BKA6	Lactococcus_phage	84.8	2.5e-30
WP_011835820.1|2093902_2094133_-	hypothetical protein	NA	A0A1P8BMS6	Lactococcus_phage	46.2	5.7e-10
WP_011835821.1|2094151_2094490_-	DUF1140 family protein	NA	A0A1B1IMW5	Lactococcus_phage	95.5	3.3e-54
WP_011835822.1|2094490_2094910_-	dUTP diphosphatase	NA	Q9MBX9	Lactococcus_phage	98.6	1.6e-71
WP_011835823.1|2094906_2095464_-	DUF1642 domain-containing protein	NA	Q9AZU5	Lactococcus_phage	47.3	4.2e-22
WP_011835824.1|2095479_2095716_-	hypothetical protein	NA	A0A023J2W2	Lactococcus_phage	55.7	2.8e-12
WP_014735137.1|2095696_2095891_-	hypothetical protein	NA	A0A1P8BKQ8	Lactococcus_phage	91.5	2.9e-23
WP_011835825.1|2095887_2096085_-	DUF1125 domain-containing protein	NA	NA	NA	NA	NA
WP_011835826.1|2096085_2096352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835827.1|2096332_2096665_-	hypothetical protein	NA	Q9G0E0	Lactococcus_phage	85.3	2.8e-10
WP_011835830.1|2097311_2097551_-	DUF1031 domain-containing protein	NA	A0A059NT75	Lactococcus_phage	98.7	2.3e-38
WP_011835831.1|2097547_2097922_-	DUF1064 domain-containing protein	NA	Q9AZV2	Lactococcus_phage	97.6	5.2e-61
WP_011835832.1|2097918_2098644_-	hypothetical protein	NA	A0A1P8BKN5	Lactococcus_phage	97.9	1.4e-131
WP_011835833.1|2098643_2099426_-	phage replisome organiser protein	NA	A0A1P8BKN4	Lactococcus_phage	95.4	8.2e-125
WP_011835834.1|2099554_2099980_-	single-stranded DNA-binding protein	NA	Q9MC32	Lactococcus_phage	97.9	8.0e-74
WP_011835835.1|2099972_2100107_-	translation initiation factor	NA	Q0ILF6	Lactococcus_phage	93.2	2.4e-16
WP_011835836.1|2100359_2100731_-	hypothetical protein	NA	Q0ILF6	Lactococcus_phage	100.0	3.3e-68
WP_011835837.1|2100739_2101135_-	hypothetical protein	NA	A0A1P8BL23	Lactococcus_phage	99.2	2.5e-69
WP_011835838.1|2101233_2101476_-	hypothetical protein	NA	A0A1B1IMF7	Lactococcus_phage	97.5	3.7e-36
WP_014735139.1|2101583_2101961_+	DUF2513 domain-containing protein	NA	Q4ZCQ5	Staphylococcus_virus	36.0	7.2e-18
WP_011835840.1|2101953_2102157_-	hypothetical protein	NA	A0A2H4JBS5	uncultured_Caudovirales_phage	39.2	9.8e-06
WP_011835841.1|2102252_2102522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835842.1|2102535_2103294_-	phage repressor protein/antirepressor Ant	NA	A0A1B1IMQ3	Lactococcus_phage	72.2	4.4e-91
WP_011835843.1|2103306_2103555_-	helix-turn-helix transcriptional regulator	NA	J7KK54	Streptococcus_phage	51.7	2.2e-07
WP_011835844.1|2103659_2103896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011835845.1|2103867_2104089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014735140.1|2104463_2104661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835847.1|2104944_2105442_+	helix-turn-helix domain-containing protein	NA	J7KJ52	Streptococcus_phage	50.4	1.7e-22
WP_011835848.1|2105447_2105882_+	zinc peptidase	NA	NA	NA	NA	NA
WP_011835849.1|2105895_2106231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014735141.1|2106298_2107480_+|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	47.5	2.0e-90
WP_011676957.1|2107774_2108281_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
2107500:2107522	attR	AACGTAACTAAAAACGTAACTAA	NA	NA	NA	NA
WP_011676958.1|2108290_2108479_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_011676959.1|2108489_2109050_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_011676960.1|2109077_2109320_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_011835851.1|2109554_2110526_-|tRNA	methionyl-tRNA formyltransferase	tRNA	NA	NA	NA	NA
>prophage 11
NC_009004	Lactococcus lactis subsp. cremoris MG1363, complete genome	2529478	2212624	2227565	2529478	integrase,terminase	Lactococcus_phage(87.5%)	21	2209415:2209430	2227651:2227666
2209415:2209430	attL	TTTTAACATAGTTCTA	NA	NA	NA	NA
WP_011835936.1|2212624_2212957_-	hypothetical protein	NA	Q9AZE0	Lactococcus_phage	90.7	4.8e-50
WP_011835937.1|2212956_2213397_-|terminase	terminase small subunit	terminase	Q9AZI3	Lactococcus_phage	89.0	8.3e-58
WP_011677047.1|2213529_2214072_-	hypothetical protein	NA	Q9AZI4	Lactococcus_phage	82.2	9.3e-51
WP_011835938.1|2214288_2215917_-	DNA primase	NA	Q9AZI5	Lactococcus_phage	91.9	1.4e-296
WP_011835939.1|2215927_2216722_-	bifunctional DNA primase/polymerase	NA	Q9AZI6	Lactococcus_phage	95.8	1.8e-151
WP_011835940.1|2216718_2217054_-	hypothetical protein	NA	Q9AZI7	Lactococcus_phage	95.4	4.2e-54
WP_011835941.1|2217123_2217363_-	hypothetical protein	NA	Q9AZJ0	Lactococcus_phage	87.3	5.3e-35
WP_011835942.1|2217400_2217682_-	hypothetical protein	NA	Q9AZJ1	Lactococcus_phage	93.5	2.5e-44
WP_011835945.1|2217903_2218107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835946.1|2218103_2218625_-	hypothetical protein	NA	Q9AZJ3	Lactococcus_phage	78.9	7.0e-72
WP_011835947.1|2218883_2219549_-	Rha family transcriptional regulator	NA	R9QNB1	Lactococcus_phage	48.7	1.2e-47
WP_014735153.1|2219711_2219933_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011835948.1|2220103_2220646_+	helix-turn-helix transcriptional regulator	NA	A0A0P0IV68	Lactobacillus_phage	50.8	3.3e-08
WP_014735154.1|2220867_2221098_+	hypothetical protein	NA	Q9AZK0	Lactococcus_phage	84.2	3.5e-15
WP_014735155.1|2221170_2221365_+	hypothetical protein	NA	Q9AZK1	Lactococcus_phage	93.8	2.5e-27
WP_011835949.1|2221546_2222281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011835950.1|2222486_2222672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011835951.1|2222858_2223923_+	hypothetical protein	NA	A0A141E0C6	Streptococcus_phage	54.6	1.6e-102
WP_011835952.1|2224574_2224889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011835953.1|2225692_2225887_+	hypothetical protein	NA	Q9AZK6	Lactococcus_phage	62.3	3.7e-10
WP_011835954.1|2226383_2227565_+|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	46.2	3.1e-91
2227651:2227666	attR	TTTTAACATAGTTCTA	NA	NA	NA	NA
>prophage 12
NC_009004	Lactococcus lactis subsp. cremoris MG1363, complete genome	2529478	2479372	2491949	2529478	integrase	Lactococcus_phage(92.31%)	16	2480030:2480045	2489020:2489035
WP_011836143.1|2479372_2481373_-	ATP-dependent DNA helicase RecG	NA	B2CRJ8	Acidianus_filamentous_virus	24.0	2.1e-07
2480030:2480045	attL	TTCAGAAAACTGTTCA	NA	NA	NA	NA
WP_041931367.1|2481511_2481838_-	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
WP_011836145.1|2481926_2483105_-|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	46.8	3.6e-92
WP_011836146.1|2483632_2484235_-	helix-turn-helix transcriptional regulator	NA	A0A1P8BMN9	Lactococcus_phage	59.1	1.5e-12
WP_014735188.1|2484396_2484600_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011836147.1|2484618_2485311_+	Bro-N domain-containing protein	NA	Q9AZJ5	Lactococcus_phage	47.8	1.1e-19
WP_011836148.1|2485564_2486098_+	hypothetical protein	NA	Q9AZJ3	Lactococcus_phage	62.1	2.0e-50
WP_011836149.1|2486090_2486372_+	hypothetical protein	NA	Q9AZJ1	Lactococcus_phage	94.6	6.1e-46
WP_011836150.1|2486414_2486654_+	hypothetical protein	NA	Q9AZJ0	Lactococcus_phage	91.1	6.3e-36
WP_011836152.1|2486901_2487231_+	hypothetical protein	NA	Q9AZI7	Lactococcus_phage	95.4	2.9e-55
WP_011836153.1|2487339_2488134_+	bifunctional DNA primase/polymerase	NA	Q9AZI6	Lactococcus_phage	94.7	1.5e-150
WP_011836154.1|2488144_2489773_+	DNA primase	NA	Q9AZI5	Lactococcus_phage	92.3	3.4e-298
2489020:2489035	attR	TGAACAGTTTTCTGAA	NA	NA	NA	NA
WP_011836155.1|2490000_2490543_+	hypothetical protein	NA	Q9AZI4	Lactococcus_phage	71.4	4.2e-59
WP_011836156.1|2490815_2491118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011836157.1|2491191_2491602_+	DUF722 domain-containing protein	NA	Q9AZI2	Lactococcus_phage	94.9	8.2e-68
WP_011836158.1|2491625_2491949_+	sigma-70 family RNA polymerase sigma factor	NA	Q9AZI1	Lactococcus_phage	89.7	7.4e-48
