The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_012121	Staphylococcus carnosus subsp. carnosus TM300, complete genome	2566424	380127	392600	2566424		uncultured_Caudovirales_phage(50.0%)	9	NA	NA
WP_015899630.1|380127_381192_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.2	9.8e-20
WP_015899633.1|382066_383569_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.1	3.8e-70
WP_015899634.1|383797_385318_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	36.9	1.2e-71
WP_015899635.1|385482_385986_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	65.0	7.8e-52
WP_015899636.1|385988_386879_-	DMT family transporter	NA	NA	NA	NA	NA
WP_015899637.1|387759_388152_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	67.7	6.1e-44
WP_041612941.1|388123_390229_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	87.3	0.0e+00
WP_015899639.1|390367_391342_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	92.9	2.2e-172
WP_174221513.1|391643_392600_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.1	3.4e-133
>prophage 2
NC_012121	Staphylococcus carnosus subsp. carnosus TM300, complete genome	2566424	470728	518911	2566424	portal,protease,integrase,tail,holin,terminase,capsid,plate	Staphylococcus_phage(49.09%)	69	469451:469467	477811:477827
469451:469467	attL	AAGATATTAATGATGTA	NA	NA	NA	NA
WP_174221512.1|470728_471988_+	SufS family cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.4	1.3e-103
WP_015899719.1|471977_472448_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_015899720.1|472678_474076_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_015899721.1|474143_475193_-|integrase	site-specific integrase	integrase	A0A2H4J4I8	uncultured_Caudovirales_phage	88.5	2.3e-183
WP_015899722.1|475669_475852_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015899723.1|476193_476658_-	ImmA/IrrE family metallo-endopeptidase	NA	H9A0K3	Staphylococcus_phage	56.0	1.7e-45
WP_015899724.1|476673_476997_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JP51	Staphylococcus_phage	61.0	3.8e-28
WP_050731401.1|477171_477399_+	helix-turn-helix transcriptional regulator	NA	Q4ZD52	Staphylococcus_phage	54.8	7.1e-13
WP_015899725.1|477435_478203_+	phage antirepressor	NA	M1RZB2	Staphylococcus_phage	68.3	4.5e-91
477811:477827	attR	TACATCATTAATATCTT	NA	NA	NA	NA
WP_165380129.1|478217_478364_+	hypothetical protein	NA	A0A2H4JB78	uncultured_Caudovirales_phage	80.0	6.6e-12
WP_015899727.1|478356_478581_-	hypothetical protein	NA	A0A2H4JDC2	uncultured_Caudovirales_phage	93.2	1.4e-32
WP_167313206.1|479124_479274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015899728.1|479251_479524_-	hypothetical protein	NA	A0A1J0MFQ1	Staphylococcus_phage	48.8	1.3e-13
WP_015899729.1|479587_479824_+	hypothetical protein	NA	A0A1J0MG48	Staphylococcus_phage	73.8	1.3e-20
WP_041612947.1|479820_480042_+	hypothetical protein	NA	Q4ZCA4	Staphylococcus_virus	64.4	6.1e-17
WP_015899730.1|480129_480375_+	hypothetical protein	NA	Q4ZCA3	Staphylococcus_virus	51.2	9.1e-14
WP_015899731.1|480367_480628_+	DUF2483 family protein	NA	Q4ZCA2	Staphylococcus_virus	96.4	1.3e-37
WP_015899732.1|480584_481256_+	ERF family protein	NA	A0A1J0MF78	Staphylococcus_phage	87.3	5.1e-107
WP_015899733.1|481255_481687_+	single-stranded DNA-binding protein	NA	A0A1J0MFD7	Staphylococcus_phage	71.7	9.6e-51
WP_015899734.1|481698_482250_+	HNH endonuclease	NA	A0A2H4PQR4	Staphylococcus_phage	78.1	2.7e-82
WP_015899735.1|482250_482925_+	hypothetical protein	NA	I6TK06	Staphylococcus_virus	81.2	6.7e-107
WP_015899736.1|482921_483683_+	conserved phage C-terminal domain-containing protein	NA	A0A1W6JNI1	Staphylococcus_phage	71.3	6.4e-98
WP_015899737.1|483683_484469_+	ATP-binding protein	NA	A0A1W6JPS4	Staphylococcus_phage	62.5	9.8e-94
WP_015899738.1|484634_485042_+	RusA family crossover junction endodeoxyribonuclease	NA	Q4ZC94	Staphylococcus_virus	71.1	7.4e-53
WP_015899739.1|485038_485215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015899740.1|485220_485751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115314409.1|485811_486228_+	DUF3310 domain-containing protein	NA	A0A2H4JAP9	uncultured_Caudovirales_phage	63.2	4.6e-18
WP_015899742.1|486220_486706_+	nucleoside 2-deoxyribosyltransferase	NA	A0A1W6JQI2	Staphylococcus_phage	69.1	6.6e-56
WP_015899743.1|486752_486950_+	hypothetical protein	NA	Q4ZC85	Staphylococcus_virus	61.7	1.9e-14
WP_041612949.1|486942_487146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015899744.1|487146_487656_+	dUTP pyrophosphatase	NA	A0A1W6JQ84	Staphylococcus_phage	73.6	9.3e-61
WP_015899745.1|487705_487912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015899746.1|487912_488155_+	DUF1381 domain-containing protein	NA	U3PD04	Staphylococcus_phage	72.9	8.4e-12
WP_041612950.1|488161_488434_+	hypothetical protein	NA	A0A2H4JEE2	uncultured_Caudovirales_phage	83.3	6.5e-37
WP_015899747.1|488426_488711_+	hypothetical protein	NA	A0A1D6Z237	Staphylococcus_phage	55.6	4.7e-22
WP_174221511.1|488777_489101_+	hypothetical protein	NA	A0A2H4JHD4	uncultured_Caudovirales_phage	63.2	3.2e-06
WP_015899748.1|489234_489414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015899749.1|489426_489840_+	hypothetical protein	NA	A0A2H4J3L6	uncultured_Caudovirales_phage	66.9	4.3e-48
WP_041612952.1|490134_490467_+	HNH endonuclease	NA	D2XR61	Bacillus_phage	59.6	3.0e-28
WP_015899750.1|490643_490991_+	hypothetical protein	NA	A0A1W6JQ38	Staphylococcus_phage	69.6	4.0e-39
WP_015899751.1|490987_492628_+|terminase	terminase large subunit	terminase	A0A059T7Q8	Listeria_phage	69.1	1.0e-225
WP_115314408.1|492693_493815_+|portal	phage portal protein	portal	A0A075M040	Staphylococcus_phage	56.2	4.1e-117
WP_015899753.1|493804_494521_+|protease	Clp protease ClpP	protease	A0A1W6JPK0	Staphylococcus_phage	47.6	2.3e-57
WP_015899754.1|494545_495664_+|capsid	phage major capsid protein	capsid	A0A1W6JPL4	Staphylococcus_phage	77.7	1.7e-163
WP_015899755.1|495736_496033_+	hypothetical protein	NA	A8ATA0	Listeria_phage	45.3	3.3e-18
WP_015899756.1|496007_496373_+	hypothetical protein	NA	A8ATA1	Listeria_phage	44.4	4.4e-20
WP_015899757.1|496369_496777_+	hypothetical protein	NA	R4WAN5	Staphylococcus_phage	62.4	6.5e-41
WP_015899758.1|496773_497169_+	hypothetical protein	NA	Q4ZCL5	Staphylococcus_virus	64.1	7.0e-40
WP_015899759.1|497210_497852_+|tail	tail protein	tail	Q9B0D5	Staphylococcus_virus	77.9	5.6e-95
WP_015899760.1|497928_498390_+	Ig domain-containing protein	NA	Q9B0D4	Staphylococcus_phage	63.1	1.7e-45
WP_015899761.1|498437_498782_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	60.4	8.8e-31
WP_015899762.1|498832_498988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015899763.1|499001_501107_+|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	58.9	6.9e-102
WP_081427455.1|501054_505263_+	peptidoglycan DD-metalloendopeptidase family protein	NA	H9A126	Staphylococcus_phage	53.0	9.2e-122
WP_015899765.1|505259_506093_+|tail	phage tail family protein	tail	R4WAV3	Staphylococcus_phage	54.0	6.6e-72
WP_015899766.1|506103_507669_+|tail	phage tail protein	tail	A0A2H4J2R7	uncultured_Caudovirales_phage	50.8	7.3e-149
WP_015899767.1|507661_507880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015899768.1|507884_509840_+	right-handed parallel beta-helix repeat-containing protein	NA	A0A2H4JHN3	uncultured_Caudovirales_phage	35.2	3.5e-15
WP_015899769.1|509842_511267_+|plate	BppU family phage baseplate upper protein	plate	D7RWE2	Brochothrix_phage	45.9	6.5e-35
WP_015899770.1|511271_511628_+	hypothetical protein	NA	I6SAV6	Staphylococcus_virus	31.0	1.2e-09
WP_015899771.1|511627_511801_+	XkdX family protein	NA	NA	NA	NA	NA
WP_015899772.1|511839_512262_+	hypothetical protein	NA	A0A2H4JID2	uncultured_Caudovirales_phage	77.9	7.2e-59
WP_015899773.1|512248_512647_+	hypothetical protein	NA	A0A2H4JCM1	uncultured_Caudovirales_phage	89.4	2.3e-59
WP_015899774.1|512693_514799_+|plate	BppU family phage baseplate upper protein	plate	Q4ZCC6	Staphylococcus_virus	53.6	1.2e-48
WP_015899775.1|514857_515121_+|holin	phage holin	holin	A0A1W6JNV9	Staphylococcus_phage	75.9	3.6e-32
WP_015899776.1|515120_516524_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCA1	uncultured_Caudovirales_phage	84.2	1.8e-239
WP_015899777.1|517217_517898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015899778.1|517890_518031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015899779.1|518110_518911_+	glycerophosphoryl diester phosphodiesterase	NA	W0TWE2	Staphylococcus_phage	41.1	1.3e-37
>prophage 3
NC_012121	Staphylococcus carnosus subsp. carnosus TM300, complete genome	2566424	689073	700060	2566424		Prochlorococcus_phage(33.33%)	11	NA	NA
WP_015899939.1|689073_689931_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	38.4	3.7e-38
WP_041612960.1|690139_690622_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	3.1e-21
WP_015899941.1|690608_691736_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_015899942.1|691735_692440_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	46.4	2.1e-50
WP_015899943.1|692439_692706_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	A0A1B1IU82	uncultured_Mediterranean_phage	35.0	2.9e-05
WP_015899944.1|692705_693377_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_015899945.1|693369_695559_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	5.6e-139
WP_015899946.1|695537_696959_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.2	3.9e-48
WP_015899947.1|696963_698001_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.8	7.7e-70
WP_015899948.1|697997_698564_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.1	5.5e-30
WP_015899949.1|698581_700060_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	48.5	3.3e-74
>prophage 4
NC_012121	Staphylococcus carnosus subsp. carnosus TM300, complete genome	2566424	1385527	1412528	2566424		Staphylococcus_phage(91.3%)	28	NA	NA
WP_015900611.1|1385527_1386484_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	85.2	2.1e-66
WP_015900612.1|1386488_1387046_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	61.6	1.5e-59
WP_015900613.1|1387108_1388065_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_015900614.1|1388257_1389088_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_015900615.1|1389343_1390339_+	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	64.2	1.3e-114
WP_015900616.1|1390407_1390866_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	80.3	1.1e-57
WP_167313209.1|1390898_1392077_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	70.8	5.0e-166
WP_015900618.1|1392095_1392728_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	63.3	1.3e-72
WP_015900619.1|1392734_1393784_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	58.1	4.2e-116
WP_015900620.1|1394189_1395671_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	64.5	6.5e-14
WP_015900621.1|1395808_1396654_-	glucosaminidase domain-containing protein	NA	A0A1W6JQU5	Staphylococcus_phage	42.9	3.9e-40
WP_015900622.1|1396973_1397195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015900623.1|1397397_1398333_+	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	41.8	4.1e-22
WP_015900624.1|1398316_1398769_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	41.5	8.6e-18
WP_015900625.1|1398896_1399613_-	transaldolase	NA	R9TM64	Synechococcus_phage	36.0	6.6e-20
WP_015900626.1|1399797_1400103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015900627.1|1400173_1400545_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	65.3	3.3e-39
WP_041612985.1|1400537_1400894_+	CrcB family protein	NA	NA	NA	NA	NA
WP_015900629.1|1400940_1401864_-	ADP-ribosylglycohydrolase family protein	NA	A0A1S6UB21	Serratia_phage	31.6	4.9e-36
WP_015900630.1|1401874_1402717_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	70.0	7.0e-114
WP_015900633.1|1404330_1405236_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	75.2	8.1e-100
WP_015900634.1|1405327_1406524_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	81.9	4.7e-188
WP_015900635.1|1406910_1408503_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	78.8	3.8e-254
WP_065865379.1|1408552_1409332_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	65.7	1.2e-91
WP_015900637.1|1409315_1409789_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	47.1	1.1e-34
WP_015900638.1|1409877_1410132_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	70.6	4.2e-30
WP_015900639.1|1410128_1411136_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	51.0	1.6e-93
WP_015900640.1|1411139_1412528_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	59.7	5.1e-162
>prophage 5
NC_012121	Staphylococcus carnosus subsp. carnosus TM300, complete genome	2566424	1540294	1557463	2566424	terminase,integrase	uncultured_Caudovirales_phage(43.75%)	22	1538365:1538378	1555491:1555504
1538365:1538378	attL	TTAAATCAACGTTT	NA	NA	NA	NA
WP_015900761.1|1540294_1540873_+	hypothetical protein	NA	A0A1D6Z277	Staphylococcus_phage	68.4	1.4e-12
WP_041612995.1|1540923_1541310_-	YbgA family protein	NA	NA	NA	NA	NA
WP_015900763.1|1541337_1541529_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	85.7	3.3e-27
WP_015900764.1|1541577_1542306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015900765.1|1542386_1542935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015900766.1|1542934_1543390_-	SocA family protein	NA	I6R0L8	Salmonella_phage	37.9	6.6e-18
WP_015900767.1|1543511_1543850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015900768.1|1543846_1544161_-	hypothetical protein	NA	A0A2H4JEA5	uncultured_Caudovirales_phage	52.0	1.1e-22
WP_015900769.1|1544453_1544990_-	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	48.6	4.6e-42
WP_041612996.1|1545017_1545491_-|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JB21	uncultured_Caudovirales_phage	68.8	8.6e-53
WP_015900772.1|1547021_1547480_-	hypothetical protein	NA	A0A2H4JGU4	uncultured_Caudovirales_phage	92.1	2.1e-72
WP_015900773.1|1547492_1548128_-	hypothetical protein	NA	A0A2H4JFF8	uncultured_Caudovirales_phage	47.6	1.0e-48
WP_015900774.1|1548321_1548786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015900775.1|1549297_1550818_-	nucleoside triphosphatase	NA	A0A1P8BMT9	Lactococcus_phage	45.1	8.2e-105
WP_015900776.1|1550830_1551718_-	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	51.2	2.0e-79
WP_015900777.1|1551820_1552135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015900779.1|1552310_1552613_-	helix-turn-helix domain-containing protein	NA	A0A2H4JHK0	uncultured_Caudovirales_phage	75.8	2.7e-36
WP_015900780.1|1552613_1553243_-	hypothetical protein	NA	A0A1W6JPC3	Staphylococcus_phage	60.7	1.7e-59
WP_015900781.1|1553246_1553459_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JQE8	Staphylococcus_phage	82.8	1.3e-24
WP_015900784.1|1554273_1555446_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JFF0	uncultured_Caudovirales_phage	77.5	1.4e-173
WP_015900785.1|1555514_1557137_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	53.0	9.9e-157
1555491:1555504	attR	TTAAATCAACGTTT	NA	NA	NA	NA
WP_015900786.1|1557178_1557463_-	co-chaperone GroES	NA	A0A221S4A8	uncultured_virus	37.0	8.9e-13
