assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000009385.1_ASM938v1	NC_009332	Streptococcus pyogenes str. Manfredo, complete genome	1	819458-819558	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3	Orphan	TATAATTAGACTATACCAATTTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3	NA|262aa|up_6|NC_009332.1_810841_811627_-,NA	NA|755aa|up_9|NC_009332.1_806218_808483_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|207aa|up_8|NC_009332.1_808739_809360_-	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|205aa|up_7|NC_009332.1_810100_810715_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_6|NC_009332.1_810841_811627_-	NA	NA|233aa|up_5|NC_009332.1_811636_812335_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|124aa|up_4|NC_009332.1_812334_812706_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|1037aa|up_3|NC_009332.1_812890_816001_+	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|338aa|up_2|NC_009332.1_816080_817094_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|501aa|up_1|NC_009332.1_817156_818659_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|186aa|up_0|NC_009332.1_818876_819434_+	TIGR02227, Inactive_signal_peptidase_IA	NA|605aa|down_0|NC_009332.1_819609_821424_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|112aa|down_1|NC_009332.1_821619_821955_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|214aa|down_2|NC_009332.1_822061_822703_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|210aa|down_3|NC_009332.1_822712_823342_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|279aa|down_4|NC_009332.1_823357_824194_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|258aa|down_5|NC_009332.1_824564_825338_+	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|412aa|down_6|NC_009332.1_825707_826943_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|441aa|down_7|NC_009332.1_827062_828385_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|773aa|down_8|NC_009332.1_828913_831232_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|83aa|down_9|NC_009332.1_831594_831843_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_000009385.1_ASM938v1	NC_009332	Streptococcus pyogenes str. Manfredo, complete genome	2	1674639-1674784	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3	Orphan	TCATTTTGTAGAAAAAGAAAATTTCTAACTCTTCGCTTTTTCCTACCATAACAT	54	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3	NA,NA|84aa|down_0|NC_009332.1_1676831_1677083_-,NA|95aa|down_7|NC_009332.1_1684605_1684890_-,NA|79aa|down_9|NC_009332.1_1685576_1685813_+	NA|543aa|up_9|NC_009332.1_1659915_1661544_+	cd08518, PBP2_NikA_DppA_OppA_like_19, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|326aa|up_8|NC_009332.1_1661656_1662634_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|274aa|up_7|NC_009332.1_1662630_1663452_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|268aa|up_6|NC_009332.1_1663463_1664267_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|209aa|up_5|NC_009332.1_1664250_1664877_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|67aa|up_4|NC_009332.1_1664957_1665158_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|824aa|up_3|NC_009332.1_1665326_1667798_-	TIGR01363, pneumococcal_histidine_triad_A_protein, streptococcal histidine triad protein	NA|307aa|up_2|NC_009332.1_1667810_1668731_-	cd01017, AdcA, Metal binding protein AdcA	NA|1151aa|up_1|NC_009332.1_1668993_1672446_-	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|493aa|up_0|NC_009332.1_1672814_1674293_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|84aa|down_0|NC_009332.1_1676831_1677083_-	NA	NA|543aa|down_1|NC_009332.1_1677160_1678789_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|463aa|down_2|NC_009332.1_1678890_1680279_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|218aa|down_3|NC_009332.1_1680275_1680929_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_4|NC_009332.1_1681022_1682240_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|225aa|down_5|NC_009332.1_1682252_1682927_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|423aa|down_6|NC_009332.1_1682913_1684182_-	COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane]	NA|95aa|down_7|NC_009332.1_1684605_1684890_-	NA	NA|99aa|down_8|NC_009332.1_1685036_1685333_-	pfam14131, DUF4298, Domain of unknown function (DUF4298)	NA|79aa|down_9|NC_009332.1_1685576_1685813_+	NA
