assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000009285.1_ASM928v2	NC_008313	Cupriavidus necator H16 chromosome 1, complete sequence	1	3494181-3494289	1	CRISPRCasFinder	no		cas3,RT,csa3,c2c9_V-U4,DinG,DEDDh,WYL	Orphan	GTAGCCGCCGCGCTCTTCGGCCAGC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,c2c9_V-U4,DinG,DEDDh,WYL	NA|188aa|up_5|NC_008313.1_3483417_3483981_+,NA|101aa|down_3|NC_008313.1_3501274_3501577_-	NA|573aa|up_9|NC_008313.1_3479975_3481694_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|82aa|up_8|NC_008313.1_3481877_3482123_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|99aa|up_7|NC_008313.1_3482156_3482453_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|254aa|up_6|NC_008313.1_3482653_3483415_+	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension	NA|188aa|up_5|NC_008313.1_3483417_3483981_+	NA	NA|266aa|up_4|NC_008313.1_3484542_3485340_+	cd11297, PIN_LabA-like_N_1, uncharacterized subfamily of N-terminal LabA-like PIN domains	NA|72aa|up_3|NC_008313.1_3486318_3486534_+	pfam08845, SymE_toxin, Toxin SymE, type I toxin-antitoxin system	NA|787aa|up_2|NC_008313.1_3487047_3489408_+	sd00006, TPR, Tetratricopeptide repeat	NA|345aa|up_1|NC_008313.1_3490486_3491521_-	TIGR03187, hypothetical_protein, DGQHR domain	NA|396aa|up_0|NC_008313.1_3492020_3493208_-	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated	NA|206aa|down_0|NC_008313.1_3496907_3497525_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|542aa|down_1|NC_008313.1_3497521_3499147_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|702aa|down_2|NC_008313.1_3499172_3501278_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|101aa|down_3|NC_008313.1_3501274_3501577_-	NA	NA|313aa|down_4|NC_008313.1_3501583_3502522_-	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|465aa|down_5|NC_008313.1_3502663_3504058_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|181aa|down_6|NC_008313.1_3504114_3504657_+	PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase; Provisional	NA|205aa|down_7|NC_008313.1_3504703_3505318_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|298aa|down_8|NC_008313.1_3505454_3506348_-	PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional	NA|248aa|down_9|NC_008313.1_3506344_3507088_-	cd00254, LT-like, lytic transglycosylase(LT)-like domain
GCF_000009285.1_ASM928v2	NC_008314	Cupriavidus necator H16 chromosome 2, complete sequence	1	203086-203188	1	CRISPRCasFinder	no		DEDDh,csa3,DinG	Orphan	TGGTGACCGGCGCCAGCGGCGAACC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,c2c9_V-U4,DinG,DEDDh,WYL	NA|82aa|up_8|NC_008314.1_194751_194997_-,NA	NA|327aa|up_9|NC_008314.1_193717_194698_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|82aa|up_8|NC_008314.1_194751_194997_-	NA	NA|188aa|up_7|NC_008314.1_195137_195701_-	pfam02325, YGGT, YGGT family	NA|153aa|up_6|NC_008314.1_195938_196397_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|224aa|up_5|NC_008314.1_196529_197201_+	PRK11280, PRK11280, hypothetical protein; Provisional	NA|514aa|up_4|NC_008314.1_197197_198739_-	PRK08316, PRK08316, acyl-CoA synthetase; Validated	NA|237aa|up_3|NC_008314.1_198865_199576_-	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|253aa|up_2|NC_008314.1_199669_200428_-	cd09170, PLDc_Nuc, Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins	NA|69aa|up_1|NC_008314.1_200611_200818_+	pfam07311, Dodecin, Dodecin	NA|556aa|up_0|NC_008314.1_200995_202663_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|370aa|down_0|NC_008314.1_204989_206099_+	pfam15984, Collagen_mid, Bacterial collagen, middle region	NA|59aa|down_1|NC_008314.1_206469_206646_+	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]	NA|159aa|down_2|NC_008314.1_206667_207144_+	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|159aa|down_3|NC_008314.1_207216_207693_+	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]	NA|318aa|down_4|NC_008314.1_207743_208697_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|471aa|down_5|NC_008314.1_208716_210129_+	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]	NA|414aa|down_6|NC_008314.1_210175_211417_+	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]	NA|439aa|down_7|NC_008314.1_211418_212735_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|309aa|down_8|NC_008314.1_212727_213654_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|346aa|down_9|NC_008314.1_213685_214723_+	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]
