assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000009265.1_ASM926v1	NC_008380	Rhizobium leguminosarum bv. viciae 3841, complete genome	1	1053886-1053968	1	CRISPRCasFinder	no		DEDDh,WYL,cas3,csa3	Orphan	TGCCGAAAAGTGTGAGCGGTTTTCGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,csa3	NA,NA	NA|332aa|up_9|NC_008380.1_1041017_1042013_-	cd12834, ZntB_u1, Uncharacterized bacterial subgroup of the Salmonella typhimurium Zn2+ transporter ZntB-like subfamily	NA|593aa|up_8|NC_008380.1_1042222_1044001_+	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5	NA|252aa|up_7|NC_008380.1_1044030_1044786_+	PRK06023, PRK06023, crotonase/enoyl-CoA hydratase family protein	NA|335aa|up_6|NC_008380.1_1044848_1045853_-	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain	NA|113aa|up_5|NC_008380.1_1045977_1046316_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|417aa|up_4|NC_008380.1_1046330_1047581_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|262aa|up_3|NC_008380.1_1047577_1048363_-	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|332aa|up_2|NC_008380.1_1048452_1049448_+	pfam14415, DUF4424, Domain of unknown function (DUF4424)	NA|646aa|up_1|NC_008380.1_1049664_1051602_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|639aa|up_0|NC_008380.1_1051865_1053782_-	COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]	NA|308aa|down_0|NC_008380.1_1054027_1054951_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|256aa|down_1|NC_008380.1_1055037_1055805_-	cd05233, SDR_c, classical (c) SDRs	NA|84aa|down_2|NC_008380.1_1055891_1056143_-	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|312aa|down_3|NC_008380.1_1056145_1057081_-	cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII	NA|134aa|down_4|NC_008380.1_1057368_1057770_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|224aa|down_5|NC_008380.1_1057905_1058577_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|475aa|down_6|NC_008380.1_1058578_1060003_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|274aa|down_7|NC_008380.1_1060047_1060869_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|276aa|down_8|NC_008380.1_1060861_1061689_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|347aa|down_9|NC_008380.1_1061698_1062739_-	COG0687, PotD, Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
GCF_000009265.1_ASM926v1	NC_008380	Rhizobium leguminosarum bv. viciae 3841, complete genome	2	1148547-1148845	1	CRT	no	csa3	DEDDh,WYL,cas3,csa3	Type I-A	GANCCGCCNGTGCCGACNGT	20	0	0	NA	NA	NA	5	5	Orphan	DEDDh,WYL,cas3,csa3	NA|68aa|up_9|NC_008380.1_1136839_1137043_-,NA|216aa|up_4|NC_008380.1_1143582_1144230_+,NA|148aa|up_1|NC_008380.1_1147502_1147946_-,NA|116aa|up_0|NC_008380.1_1147955_1148303_-,NA|295aa|down_0|NC_008380.1_1149085_1149970_-,NA|78aa|down_2|NC_008380.1_1153764_1153998_+,NA|151aa|down_3|NC_008380.1_1154173_1154626_+	NA|68aa|up_9|NC_008380.1_1136839_1137043_-	NA	NA|971aa|up_8|NC_008380.1_1137039_1139952_-	cd01948, EAL, EAL domain	NA|204aa|up_7|NC_008380.1_1139951_1140563_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|433aa|up_6|NC_008380.1_1140592_1141891_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|475aa|up_5|NC_008380.1_1141894_1143319_-	PRK09225, PRK09225, threonine synthase; Validated	NA|216aa|up_4|NC_008380.1_1143582_1144230_+	NA	NA|230aa|up_3|NC_008380.1_1144550_1145240_-	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|610aa|up_2|NC_008380.1_1145439_1147269_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|148aa|up_1|NC_008380.1_1147502_1147946_-	NA	NA|116aa|up_0|NC_008380.1_1147955_1148303_-	NA	NA|295aa|down_0|NC_008380.1_1149085_1149970_-	NA	NA|1205aa|down_1|NC_008380.1_1150078_1153693_+	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown]	NA|78aa|down_2|NC_008380.1_1153764_1153998_+	NA	NA|151aa|down_3|NC_008380.1_1154173_1154626_+	NA	csa3|229aa|down_4|NC_008380.1_1154671_1155358_-	pfam12840, HTH_20, Helix-turn-helix domain	NA|110aa|down_5|NC_008380.1_1155430_1155760_+	pfam07978, NIPSNAP, NIPSNAP	NA|117aa|down_6|NC_008380.1_1155756_1156107_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|381aa|down_7|NC_008380.1_1156285_1157428_+	COG0863, COG0863, DNA modification methylase [DNA replication, recombination, and repair]	NA|122aa|down_8|NC_008380.1_1157594_1157960_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|205aa|down_9|NC_008380.1_1157963_1158578_-	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive
GCF_000009265.1_ASM926v1	NC_008380	Rhizobium leguminosarum bv. viciae 3841, complete genome	3	2416760-2416839	2	CRISPRCasFinder	no		DEDDh,WYL,cas3,csa3	Orphan	AGCAATTCCAGCAAAAGTGTGTAG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,csa3	NA,NA	NA|81aa|up_9|NC_008380.1_2406958_2407201_+	PRK00395, hfq, RNA-binding protein Hfq; Provisional	NA|442aa|up_8|NC_008380.1_2407278_2408604_+	TIGR03156, GTP_HflX, GTP-binding protein HflX	NA|280aa|up_7|NC_008380.1_2408829_2409669_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|up_6|NC_008380.1_2409719_2410307_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|479aa|up_5|NC_008380.1_2410575_2412012_+	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT)	NA|105aa|up_4|NC_008380.1_2412014_2412329_+	pfam11011, DUF2849, Protein of unknown function (DUF2849)	NA|557aa|up_3|NC_008380.1_2412337_2414008_+	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]	NA|171aa|up_2|NC_008380.1_2414018_2414531_+	COG3749, COG3749, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_1|NC_008380.1_2414569_2415781_+	PRK07494, PRK07494, UbiH/UbiF family hydroxylase	NA|321aa|up_0|NC_008380.1_2415748_2416711_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|312aa|down_0|NC_008380.1_2416935_2417871_-	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain	NA|264aa|down_1|NC_008380.1_2418141_2418933_-	cd05233, SDR_c, classical (c) SDRs	NA|510aa|down_2|NC_008380.1_2419287_2420817_-	cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde Dehydrogenase	NA|362aa|down_3|NC_008380.1_2421358_2422444_+	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|349aa|down_4|NC_008380.1_2422736_2423783_-	TIGR03858, LLM_2I7G, probable oxidoreductase, LLM family	NA|346aa|down_5|NC_008380.1_2424170_2425208_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|265aa|down_6|NC_008380.1_2425785_2426580_-	pfam07885, Ion_trans_2, Ion channel	NA|257aa|down_7|NC_008380.1_2426691_2427462_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|250aa|down_8|NC_008380.1_2427550_2428300_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|102aa|down_9|NC_008380.1_2428804_2429110_-	pfam07345, DUF1476, Domain of unknown function (DUF1476)
GCF_000009265.1_ASM926v1	NC_008380	Rhizobium leguminosarum bv. viciae 3841, complete genome	4	2690763-2690905	3	CRISPRCasFinder	no		DEDDh,WYL,cas3,csa3	Orphan	CCTATTCCAGCGATTACACCAACGACAGCGACGGCTTCGCCCCAAGC	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,csa3	NA,NA|235aa|down_2|NC_008380.1_2693281_2693986_+,NA|154aa|down_9|NC_008380.1_2699946_2700408_-	NA|468aa|up_9|NC_008380.1_2681125_2682529_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|146aa|up_8|NC_008380.1_2682882_2683320_+	cd08353, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|400aa|up_7|NC_008380.1_2683321_2684521_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|150aa|up_6|NC_008380.1_2684685_2685135_+	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase	NA|255aa|up_5|NC_008380.1_2685380_2686145_+	COG3821, COG3821, Predicted membrane protein [Function unknown]	NA|330aa|up_4|NC_008380.1_2686144_2687134_+	COG3503, COG3503, Predicted membrane protein [Function unknown]	NA|131aa|up_3|NC_008380.1_2687158_2687551_-	cd04776, HTH_GnyR, Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR	NA|472aa|up_2|NC_008380.1_2687615_2689031_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|165aa|up_1|NC_008380.1_2689273_2689768_+	PRK12846, PRK12846, peptide deformylase; Reviewed	NA|173aa|up_0|NC_008380.1_2689852_2690371_+	pfam04972, BON, BON domain	NA|240aa|down_0|NC_008380.1_2691149_2691869_-	PRK14341, PRK14341, lipoyl(octanoyl) transferase LipB	NA|328aa|down_1|NC_008380.1_2692233_2693217_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|235aa|down_2|NC_008380.1_2693281_2693986_+	NA	NA|674aa|down_3|NC_008380.1_2694061_2696083_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|196aa|down_4|NC_008380.1_2696188_2696776_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|156aa|down_5|NC_008380.1_2696786_2697254_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|105aa|down_6|NC_008380.1_2697422_2697737_+	PRK11431, PRK11431, quaternary ammonium compound efflux SMR transporter SugE	NA|131aa|down_7|NC_008380.1_2697778_2698171_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|511aa|down_8|NC_008380.1_2698310_2699843_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|154aa|down_9|NC_008380.1_2699946_2700408_-	NA
