assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	1	141413-141491	1	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|NC_009089.1_158246_158924_+	NA|278aa|up_9|NC_009089.1_118440_119274_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|NC_009089.1_119261_120128_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|NC_009089.1_120121_120925_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|NC_009089.1_120956_121688_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|NC_009089.1_121807_122239_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|NC_009089.1_122267_122660_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|NC_009089.1_123117_123870_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NC_009089.1_136462_137647_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NC_009089.1_138019_140371_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NC_009089.1_140392_140932_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|263aa|down_0|NC_009089.1_153983_154772_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NC_009089.1_154768_155950_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|NC_009089.1_156253_157156_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|NC_009089.1_157177_158257_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|NC_009089.1_158246_158924_+	NA	NA|72aa|down_5|NC_009089.1_158966_159182_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|NC_009089.1_159210_160290_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|NC_009089.1_160289_161042_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|NC_009089.1_161042_161600_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|NC_009089.1_161769_163116_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	2	143425-143514	2	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	5	143453-143486|143453-143486|143453-143486|143453-143486|143453-143486	NC_009089.1_12556-12589|NC_009089.1_125896-125929|NC_009089.1_132843-132876|NC_009089.1_3152446-3152413|NC_009089.1_1210839-1210872	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|NC_009089.1_158246_158924_+	NA|278aa|up_9|NC_009089.1_118440_119274_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|NC_009089.1_119261_120128_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|NC_009089.1_120121_120925_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|NC_009089.1_120956_121688_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|NC_009089.1_121807_122239_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|NC_009089.1_122267_122660_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|NC_009089.1_123117_123870_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NC_009089.1_136462_137647_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NC_009089.1_138019_140371_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NC_009089.1_140392_140932_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|263aa|down_0|NC_009089.1_153983_154772_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NC_009089.1_154768_155950_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|NC_009089.1_156253_157156_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|NC_009089.1_157177_158257_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|NC_009089.1_158246_158924_+	NA	NA|72aa|down_5|NC_009089.1_158966_159182_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|NC_009089.1_159210_160290_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|NC_009089.1_160289_161042_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|NC_009089.1_161042_161600_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|NC_009089.1_161769_163116_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	3	1125024-1125450	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,6,6	6	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|134aa|up_8|NC_009089.1_1119706_1120108_+,NA|116aa|up_7|NC_009089.1_1120101_1120449_+,NA|146aa|up_5|NC_009089.1_1120866_1121304_+,NA|59aa|up_4|NC_009089.1_1121296_1121473_+,NA|54aa|up_0|NC_009089.1_1124124_1124286_+,NA|187aa|down_0|NC_009089.1_1125949_1126510_+	NA|78aa|up_9|NC_009089.1_1119463_1119697_+	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|134aa|up_8|NC_009089.1_1119706_1120108_+	NA	NA|116aa|up_7|NC_009089.1_1120101_1120449_+	NA	NA|142aa|up_6|NC_009089.1_1120448_1120874_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_5|NC_009089.1_1120866_1121304_+	NA	NA|59aa|up_4|NC_009089.1_1121296_1121473_+	NA	NA|437aa|up_3|NC_009089.1_1121474_1122785_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_2|NC_009089.1_1122801_1123272_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_1|NC_009089.1_1123343_1123784_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|54aa|up_0|NC_009089.1_1124124_1124286_+	NA	NA|187aa|down_0|NC_009089.1_1125949_1126510_+	NA	NA|190aa|down_1|NC_009089.1_1126553_1127123_+	PRK07418, PRK07418, acetolactate synthase large subunit	NA|784aa|down_2|NC_009089.1_1127193_1129545_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|230aa|down_3|NC_009089.1_1129560_1130250_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|657aa|down_4|NC_009089.1_1130242_1132213_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_5|NC_009089.1_1132226_1132487_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_6|NC_009089.1_1132491_1132911_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_7|NC_009089.1_1132911_1133961_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_8|NC_009089.1_1133953_1134571_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|268aa|down_9|NC_009089.1_1134582_1135386_+	pfam12571, DUF3751, Phage tail-collar fibre protein
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	4	1125594-1125820	4,2	CRISPRCasFinder,PILER-CR	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,TTTTATATTAACTAAGTGGTATGTAAAG	29,28	0	0	NA	NA	I-A:I-A	3,2	3	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|134aa|up_8|NC_009089.1_1119706_1120108_+,NA|116aa|up_7|NC_009089.1_1120101_1120449_+,NA|146aa|up_5|NC_009089.1_1120866_1121304_+,NA|59aa|up_4|NC_009089.1_1121296_1121473_+,NA|54aa|up_0|NC_009089.1_1124124_1124286_+,NA|187aa|down_0|NC_009089.1_1125949_1126510_+	NA|78aa|up_9|NC_009089.1_1119463_1119697_+	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|134aa|up_8|NC_009089.1_1119706_1120108_+	NA	NA|116aa|up_7|NC_009089.1_1120101_1120449_+	NA	NA|142aa|up_6|NC_009089.1_1120448_1120874_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_5|NC_009089.1_1120866_1121304_+	NA	NA|59aa|up_4|NC_009089.1_1121296_1121473_+	NA	NA|437aa|up_3|NC_009089.1_1121474_1122785_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_2|NC_009089.1_1122801_1123272_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_1|NC_009089.1_1123343_1123784_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|54aa|up_0|NC_009089.1_1124124_1124286_+	NA	NA|187aa|down_0|NC_009089.1_1125949_1126510_+	NA	NA|190aa|down_1|NC_009089.1_1126553_1127123_+	PRK07418, PRK07418, acetolactate synthase large subunit	NA|784aa|down_2|NC_009089.1_1127193_1129545_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|230aa|down_3|NC_009089.1_1129560_1130250_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|657aa|down_4|NC_009089.1_1130242_1132213_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_5|NC_009089.1_1132226_1132487_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_6|NC_009089.1_1132491_1132911_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_7|NC_009089.1_1132911_1133961_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_8|NC_009089.1_1133953_1134571_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|268aa|down_9|NC_009089.1_1134582_1135386_+	pfam12571, DUF3751, Phage tail-collar fibre protein
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	5	1210874-1210962	5	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTGCGTTAGCACTTTAAGTAACGGAAT	27	1	3	1210901-1210935|1210901-1210935|1210901-1210935	NC_009089.1_125958-125992|NC_009089.1_132905-132939|NC_009089.1_12618-12652	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|638aa|down_2|NC_009089.1_1219344_1221258_+	NA|279aa|up_9|NC_009089.1_1196812_1197649_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|262aa|up_8|NC_009089.1_1197642_1198428_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|351aa|up_7|NC_009089.1_1198427_1199480_+	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold	NA|283aa|up_6|NC_009089.1_1199709_1200558_+	COG2199, COG2199, c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]	NA|555aa|up_5|NC_009089.1_1200547_1202212_+	cd10923, CE4_COG5298, Putative NodB-like catalytic domain of uncharacterized proteins found in bacteria	NA|419aa|up_4|NC_009089.1_1202260_1203517_+	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|694aa|up_3|NC_009089.1_1203539_1205621_+	pfam03170, BcsB, Bacterial cellulose synthase subunit	NA|358aa|up_2|NC_009089.1_1205669_1206743_+	cd19608, GH113_mannanase-like, Glycoside hydrolase family 113 beta-1,4-mannanase and similar proteins	NA|375aa|up_1|NC_009089.1_1206796_1207921_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|325aa|up_0|NC_009089.1_1207998_1208973_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|673aa|down_0|NC_009089.1_1214567_1216586_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|671aa|down_1|NC_009089.1_1217090_1219103_+	pfam01520, Amidase_3, N-acetylmuramoyl-L-alanine amidase	NA|638aa|down_2|NC_009089.1_1219344_1221258_+	NA	NA|740aa|down_3|NC_009089.1_1221250_1223470_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|277aa|down_4|NC_009089.1_1223578_1224409_+	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|1156aa|down_5|NC_009089.1_1224398_1227866_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1276aa|down_6|NC_009089.1_1227865_1231693_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|404aa|down_7|NC_009089.1_1231738_1232950_+	TIGR00619, Nuclease_SbcCD_subunit_D, exonuclease SbcD	NA|1176aa|down_8|NC_009089.1_1232936_1236464_+	TIGR00618, Nuclease_SbcCD_subunit_C, exonuclease SbcC	NA|418aa|down_9|NC_009089.1_1236594_1237848_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	6	1434756-1435639	3,6,2	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	13,13,13	13	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|52aa|down_0|NC_009089.1_1436822_1436978_+,NA|73aa|down_1|NC_009089.1_1437256_1437475_+,NA|128aa|down_2|NC_009089.1_1438695_1439079_-,NA|115aa|down_3|NC_009089.1_1439205_1439550_+,NA|72aa|down_4|NC_009089.1_1439732_1439948_+,NA|106aa|down_5|NC_009089.1_1440933_1441251_-,NA|65aa|down_8|NC_009089.1_1443636_1443831_-	NA|271aa|up_9|NC_009089.1_1421865_1422678_+	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA)	NA|442aa|up_8|NC_009089.1_1422881_1424207_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|360aa|up_7|NC_009089.1_1424419_1425499_+	pfam02618, YceG, YceG-like family	NA|225aa|up_6|NC_009089.1_1425670_1426345_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_5|NC_009089.1_1426331_1427579_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_4|NC_009089.1_1427650_1429315_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|95aa|up_3|NC_009089.1_1429411_1429696_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|506aa|up_2|NC_009089.1_1429718_1431236_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|274aa|up_1|NC_009089.1_1431360_1432182_-	sd00006, TPR, Tetratricopeptide repeat	NA|476aa|up_0|NC_009089.1_1432372_1433800_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|52aa|down_0|NC_009089.1_1436822_1436978_+	NA	NA|73aa|down_1|NC_009089.1_1437256_1437475_+	NA	NA|128aa|down_2|NC_009089.1_1438695_1439079_-	NA	NA|115aa|down_3|NC_009089.1_1439205_1439550_+	NA	NA|72aa|down_4|NC_009089.1_1439732_1439948_+	NA	NA|106aa|down_5|NC_009089.1_1440933_1441251_-	NA	NA|130aa|down_6|NC_009089.1_1442311_1442701_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|170aa|down_7|NC_009089.1_1443025_1443535_+	pfam04892, VanZ, VanZ like family	NA|65aa|down_8|NC_009089.1_1443636_1443831_-	NA	NA|131aa|down_9|NC_009089.1_1444346_1444739_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	7	1645194-1646018	4,7,3	PILER-CR,CRISPRCasFinder,CRT	no	DinG	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type IV-A	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	11,12,12	12	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|51aa|up_0|NC_009089.1_1644761_1644914_+,NA|80aa|down_4|NC_009089.1_1653164_1653404_+,NA|59aa|down_5|NC_009089.1_1653590_1653767_-	NA|260aa|up_9|NC_009089.1_1634627_1635407_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|195aa|up_8|NC_009089.1_1635500_1636085_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|477aa|up_7|NC_009089.1_1636284_1637715_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_6|NC_009089.1_1638032_1638977_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_5|NC_009089.1_1639247_1640183_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|198aa|up_4|NC_009089.1_1640301_1640895_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|143aa|up_3|NC_009089.1_1641001_1641430_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|223aa|up_2|NC_009089.1_1641496_1642165_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_1|NC_009089.1_1642282_1643638_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|51aa|up_0|NC_009089.1_1644761_1644914_+	NA	NA|578aa|down_0|NC_009089.1_1646343_1648077_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|NC_009089.1_1648316_1649162_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|NC_009089.1_1649192_1651427_-	cd01948, EAL, EAL domain	NA|270aa|down_3|NC_009089.1_1652210_1653020_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|NC_009089.1_1653164_1653404_+	NA	NA|59aa|down_5|NC_009089.1_1653590_1653767_-	NA	NA|225aa|down_6|NC_009089.1_1654271_1654946_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|122aa|down_7|NC_009089.1_1655796_1656162_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|262aa|down_8|NC_009089.1_1656626_1657412_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|265aa|down_9|NC_009089.1_1657508_1658303_-	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	8	1756278-1756833	5,8,4	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	1	1	1756373-1756408	NC_009089.1_1103665-1103700	I-A:I-A:I-A	8,8,8	8	TypeV	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|50aa|up_9|NC_009089.1_1745085_1745235_+,NA|190aa|up_7|NC_009089.1_1746149_1746719_+,NA|61aa|up_4|NC_009089.1_1749668_1749851_-,NA|95aa|down_0|NC_009089.1_1757000_1757285_-,NA|330aa|down_5|NC_009089.1_1761734_1762724_+	NA|50aa|up_9|NC_009089.1_1745085_1745235_+	NA	NA|300aa|up_8|NC_009089.1_1745245_1746145_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|NC_009089.1_1746149_1746719_+	NA	NA|216aa|up_6|NC_009089.1_1746885_1747533_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|NC_009089.1_1747922_1748837_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|NC_009089.1_1749668_1749851_-	NA	NA|283aa|up_3|NC_009089.1_1750280_1751129_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|NC_009089.1_1751147_1751975_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|308aa|up_1|NC_009089.1_1751949_1752873_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|NC_009089.1_1753525_1755619_+	cd01948, EAL, EAL domain	NA|95aa|down_0|NC_009089.1_1757000_1757285_-	NA	NA|273aa|down_1|NC_009089.1_1757491_1758310_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_2|NC_009089.1_1758442_1760563_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_3|NC_009089.1_1760588_1760816_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_4|NC_009089.1_1761142_1761583_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|330aa|down_5|NC_009089.1_1761734_1762724_+	NA	NA|403aa|down_6|NC_009089.1_1763200_1764409_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_7|NC_009089.1_1764469_1765351_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|315aa|down_8|NC_009089.1_1765736_1766681_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_9|NC_009089.1_1766903_1767449_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	9	1935482-1936495	6,9,5	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	15,15,15	15	TypeV	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|96aa|down_0|NC_009089.1_1936903_1937191_+,NA|59aa|down_5|NC_009089.1_1943510_1943687_-,NA|341aa|down_6|NC_009089.1_1944261_1945284_+,NA|258aa|down_8|NC_009089.1_1946190_1946964_+	NA|329aa|up_9|NC_009089.1_1917695_1918682_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_8|NC_009089.1_1919165_1920896_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|172aa|up_7|NC_009089.1_1921420_1921936_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|825aa|up_6|NC_009089.1_1922741_1925216_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_5|NC_009089.1_1925215_1926673_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_4|NC_009089.1_1927095_1929453_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_3|NC_009089.1_1929538_1929856_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	cas14j|373aa|up_2|NC_009089.1_1930874_1931993_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|252aa|up_1|NC_009089.1_1932168_1932924_+	pfam12395, DUF3658, Protein of unknown function	NA|424aa|up_0|NC_009089.1_1933563_1934835_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|96aa|down_0|NC_009089.1_1936903_1937191_+	NA	NA|184aa|down_1|NC_009089.1_1937729_1938281_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|323aa|down_2|NC_009089.1_1938465_1939434_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_3|NC_009089.1_1939728_1941573_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|177aa|down_4|NC_009089.1_1941877_1942408_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_5|NC_009089.1_1943510_1943687_-	NA	NA|341aa|down_6|NC_009089.1_1944261_1945284_+	NA	NA|296aa|down_7|NC_009089.1_1945297_1946185_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_8|NC_009089.1_1946190_1946964_+	NA	NA|242aa|down_9|NC_009089.1_1947075_1947801_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	10	2298603-2298770	7	PILER-CR	no	csa3	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type I-A	AGTTTTATATCAACTATGTGGTATGTAAAGTTTTTA	36	0	0	NA	NA	I-A	2	2	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|133aa|up_3|NC_009089.1_2295112_2295511_-,NA|59aa|up_1|NC_009089.1_2297642_2297819_+,NA|55aa|down_2|NC_009089.1_2300317_2300482_-,NA|20aa|down_6|NC_009089.1_2302906_2302966_+	NA|119aa|up_9|NC_009089.1_2286354_2286711_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|204aa|up_8|NC_009089.1_2288109_2288721_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|113aa|up_7|NC_009089.1_2289018_2289357_+	pfam12650, DUF3784, Domain of unknown function (DUF3784)	NA|479aa|up_6|NC_009089.1_2289763_2291200_-	PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|479aa|up_5|NC_009089.1_2291447_2292884_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|184aa|up_4|NC_009089.1_2293711_2294263_-	pfam17099, TrpP, Tryptophan transporter TrpP	NA|133aa|up_3|NC_009089.1_2295112_2295511_-	NA	NA|162aa|up_2|NC_009089.1_2295866_2296352_-	pfam08239, SH3_3, Bacterial SH3 domain	NA|59aa|up_1|NC_009089.1_2297642_2297819_+	NA	NA|67aa|up_0|NC_009089.1_2298044_2298245_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|61aa|down_0|NC_009089.1_2298995_2299178_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|282aa|down_1|NC_009089.1_2299248_2300094_+	pfam13026, DUF3887, Protein of unknown function (DUF3887)	NA|55aa|down_2|NC_009089.1_2300317_2300482_-	NA	NA|111aa|down_3|NC_009089.1_2301022_2301355_-	pfam02627, CMD, Carboxymuconolactone decarboxylase family	NA|214aa|down_4|NC_009089.1_2301598_2302240_-	COG5658, COG5658, Predicted integral membrane protein [Function unknown]	csa3|98aa|down_5|NC_009089.1_2302220_2302514_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|20aa|down_6|NC_009089.1_2302906_2302966_+	NA	NA|251aa|down_7|NC_009089.1_2303481_2304234_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|552aa|down_8|NC_009089.1_2304292_2305948_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|360aa|down_9|NC_009089.1_2307220_2308300_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	11	2662916-2663867	10,6,8	CRISPRCasFinder,CRT,PILER-CR	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	14,14,13	14	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|138aa|up_5|NC_009089.1_2659170_2659584_+,NA|99aa|up_4|NC_009089.1_2659602_2659899_+,NA|106aa|up_3|NC_009089.1_2660181_2660499_+,NA|155aa|up_2|NC_009089.1_2660634_2661099_+,NA|54aa|up_1|NC_009089.1_2661426_2661588_-,NA|51aa|up_0|NC_009089.1_2662572_2662725_-,NA|51aa|down_1|NC_009089.1_2665250_2665403_-,NA|108aa|down_2|NC_009089.1_2665676_2666000_-,NA|85aa|down_3|NC_009089.1_2666035_2666290_-,NA|57aa|down_6|NC_009089.1_2670077_2670248_+,NA|59aa|down_9|NC_009089.1_2671950_2672127_+	NA|687aa|up_9|NC_009089.1_2654800_2656861_-	cd16923, HATPase_VanS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Enterococcus faecium VanS	NA|231aa|up_8|NC_009089.1_2657056_2657749_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|125aa|up_7|NC_009089.1_2658360_2658735_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|78aa|up_6|NC_009089.1_2658953_2659187_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|138aa|up_5|NC_009089.1_2659170_2659584_+	NA	NA|99aa|up_4|NC_009089.1_2659602_2659899_+	NA	NA|106aa|up_3|NC_009089.1_2660181_2660499_+	NA	NA|155aa|up_2|NC_009089.1_2660634_2661099_+	NA	NA|54aa|up_1|NC_009089.1_2661426_2661588_-	NA	NA|51aa|up_0|NC_009089.1_2662572_2662725_-	NA	NA|308aa|down_0|NC_009089.1_2664133_2665057_-	pfam09851, SHOCT, Short C-terminal domain	NA|51aa|down_1|NC_009089.1_2665250_2665403_-	NA	NA|108aa|down_2|NC_009089.1_2665676_2666000_-	NA	NA|85aa|down_3|NC_009089.1_2666035_2666290_-	NA	NA|126aa|down_4|NC_009089.1_2668013_2668391_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|165aa|down_5|NC_009089.1_2669194_2669689_+	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|57aa|down_6|NC_009089.1_2670077_2670248_+	NA	NA|117aa|down_7|NC_009089.1_2671075_2671426_+	pfam12676, DUF3796, Protein of unknown function (DUF3796)	NA|67aa|down_8|NC_009089.1_2671427_2671628_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|59aa|down_9|NC_009089.1_2671950_2672127_+	NA
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	12	2825549-2825706	9	PILER-CR	no	cas3,cas5,cas7,cas6	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AGGTTTAAGATTAACTAAGTGG---------ATTTCA	37	0	0	NA	NA	NA	2	2	Unclear	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|492aa|down_3|NC_009089.1_2830131_2831607_-,NA|59aa|down_5|NC_009089.1_2832449_2832626_-	NA|448aa|up_9|NC_009089.1_2818005_2819349_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|79aa|up_8|NC_009089.1_2819361_2819598_-	pfam07873, YabP, YabP family	NA|188aa|up_7|NC_009089.1_2819810_2820374_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|NC_009089.1_2820566_2821064_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|NC_009089.1_2821174_2821618_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|NC_009089.1_2821647_2821827_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|NC_009089.1_2821989_2822340_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|NC_009089.1_2822382_2823681_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|NC_009089.1_2823682_2824441_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|NC_009089.1_2824459_2825407_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|NC_009089.1_2825847_2828256_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|266aa|down_1|NC_009089.1_2828282_2829080_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|339aa|down_2|NC_009089.1_2829095_2830112_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|492aa|down_3|NC_009089.1_2830131_2831607_-	NA	cas6|246aa|down_4|NC_009089.1_2831611_2832349_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|59aa|down_5|NC_009089.1_2832449_2832626_-	NA	NA|370aa|down_6|NC_009089.1_2833084_2834194_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_7|NC_009089.1_2834223_2834991_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|458aa|down_8|NC_009089.1_2835178_2836552_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_9|NC_009089.1_2836587_2837523_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	13	2907464-2907889	10,11,7	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATATGGAATGTAAAT,ATTTACATTCCATATAGTTAATATAAAAC,ATTTACATTCCATATAGTTAATATAAAAC	29,29,29	0	0	NA	NA	I-A:I-A:I-A	6,6,6	6	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|53aa|down_0|NC_009089.1_2908174_2908333_-	NA|253aa|up_9|NC_009089.1_2895801_2896560_-	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]	NA|451aa|up_8|NC_009089.1_2896690_2898043_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|517aa|up_7|NC_009089.1_2898139_2899690_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|272aa|up_6|NC_009089.1_2899740_2900556_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|161aa|up_5|NC_009089.1_2900576_2901059_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|127aa|up_4|NC_009089.1_2901342_2901723_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|406aa|up_3|NC_009089.1_2901817_2903035_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|543aa|up_2|NC_009089.1_2903693_2905322_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|332aa|up_1|NC_009089.1_2905442_2906438_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|128aa|up_0|NC_009089.1_2906615_2906999_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|53aa|down_0|NC_009089.1_2908174_2908333_-	NA	NA|457aa|down_1|NC_009089.1_2908691_2910062_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|373aa|down_2|NC_009089.1_2910275_2911394_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|223aa|down_3|NC_009089.1_2911710_2912379_-	pfam04892, VanZ, VanZ like family	NA|807aa|down_4|NC_009089.1_2913232_2915653_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|117aa|down_5|NC_009089.1_2916006_2916357_-	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|191aa|down_6|NC_009089.1_2916473_2917046_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|230aa|down_7|NC_009089.1_2917046_2917736_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|213aa|down_8|NC_009089.1_2918011_2918650_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|668aa|down_9|NC_009089.1_2918802_2920806_+	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	14	3139477-3139802	12	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTACCATCTATTTGTTGCCATCCTGT	26	0	0	NA	NA	NA	5	5	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|107aa|down_2|NC_009089.1_3142665_3142986_-,NA|664aa|down_3|NC_009089.1_3142975_3144967_-,NA|458aa|down_7|NC_009089.1_3155756_3157130_-	NA|218aa|up_9|NC_009089.1_3124463_3125117_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|448aa|up_8|NC_009089.1_3125619_3126963_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|455aa|up_7|NC_009089.1_3127141_3128506_+	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	NA|622aa|up_6|NC_009089.1_3128683_3130549_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|406aa|up_5|NC_009089.1_3130784_3132002_-	cd17396, MFS_YdiM_like, Inner membrane transport protein YdiM and similar proteins of the Major Facilitator Superfamily of transporters	NA|290aa|up_4|NC_009089.1_3132201_3133071_-	PRK12548, PRK12548, shikimate dehydrogenase	NA|641aa|up_3|NC_009089.1_3133146_3135069_-	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2	NA|283aa|up_2|NC_009089.1_3135147_3135996_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|294aa|up_1|NC_009089.1_3136408_3137290_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|270aa|up_0|NC_009089.1_3137497_3138307_-	cd01027, TOPRIM_RNase_M5_like, TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea	NA|338aa|down_0|NC_009089.1_3140561_3141575_-	PLN02240, PLN02240, UDP-glucose 4-epimerase	NA|290aa|down_1|NC_009089.1_3141598_3142468_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|107aa|down_2|NC_009089.1_3142665_3142986_-	NA	NA|664aa|down_3|NC_009089.1_3142975_3144967_-	NA	NA|848aa|down_4|NC_009089.1_3145089_3147633_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|226aa|down_5|NC_009089.1_3148376_3149054_+	cd05826, Sortase_B, Sortase domain found in class B sortases	NA|313aa|down_6|NC_009089.1_3154446_3155385_+	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs	NA|458aa|down_7|NC_009089.1_3155756_3157130_-	NA	NA|441aa|down_8|NC_009089.1_3157358_3158681_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|235aa|down_9|NC_009089.1_3158673_3159378_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	15	3194435-3194610	13	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	2	2	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NC_009089.1_3195903_3196569_+	NA|205aa|up_9|NC_009089.1_3182463_3183078_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NC_009089.1_3183092_3183542_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NC_009089.1_3183566_3185774_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NC_009089.1_3185847_3186360_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NC_009089.1_3186372_3188823_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NC_009089.1_3188835_3190500_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NC_009089.1_3190797_3191295_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NC_009089.1_3191323_3192703_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NC_009089.1_3193007_3193154_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NC_009089.1_3193183_3193762_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NC_009089.1_3195903_3196569_+	NA	NA|901aa|down_1|NC_009089.1_3197074_3199777_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NC_009089.1_3199802_3201353_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NC_009089.1_3201675_3203388_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NC_009089.1_3203741_3204002_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NC_009089.1_3204194_3205406_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NC_009089.1_3205637_3207371_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NC_009089.1_3207410_3207809_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NC_009089.1_3207811_3209359_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NC_009089.1_3209673_3210579_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	16	3194717-3195006	14	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	4	4	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NC_009089.1_3195903_3196569_+	NA|205aa|up_9|NC_009089.1_3182463_3183078_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NC_009089.1_3183092_3183542_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NC_009089.1_3183566_3185774_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NC_009089.1_3185847_3186360_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NC_009089.1_3186372_3188823_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NC_009089.1_3188835_3190500_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NC_009089.1_3190797_3191295_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NC_009089.1_3191323_3192703_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NC_009089.1_3193007_3193154_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NC_009089.1_3193183_3193762_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NC_009089.1_3195903_3196569_+	NA	NA|901aa|down_1|NC_009089.1_3197074_3199777_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NC_009089.1_3199802_3201353_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NC_009089.1_3201675_3203388_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NC_009089.1_3203741_3204002_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NC_009089.1_3204194_3205406_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NC_009089.1_3205637_3207371_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NC_009089.1_3207410_3207809_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NC_009089.1_3207811_3209359_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NC_009089.1_3209673_3210579_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	17	3195209-3195299	15	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NC_009089.1_3195903_3196569_+	NA|205aa|up_9|NC_009089.1_3182463_3183078_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NC_009089.1_3183092_3183542_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NC_009089.1_3183566_3185774_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NC_009089.1_3185847_3186360_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NC_009089.1_3186372_3188823_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NC_009089.1_3188835_3190500_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NC_009089.1_3190797_3191295_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NC_009089.1_3191323_3192703_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NC_009089.1_3193007_3193154_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NC_009089.1_3193183_3193762_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NC_009089.1_3195903_3196569_+	NA	NA|901aa|down_1|NC_009089.1_3197074_3199777_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NC_009089.1_3199802_3201353_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NC_009089.1_3201675_3203388_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NC_009089.1_3203741_3204002_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NC_009089.1_3204194_3205406_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NC_009089.1_3205637_3207371_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NC_009089.1_3207410_3207809_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NC_009089.1_3207811_3209359_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NC_009089.1_3209673_3210579_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	18	3303866-3304077	16	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TCTTCTGATGGTGGTACTGGAGGATT	26	0	0	NA	NA	NA	3	3	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|459aa|up_6|NC_009089.1_3295402_3296779_+,NA	NA|169aa|up_9|NC_009089.1_3292793_3293300_-	PRK10519, PRK10519, hypothetical protein; Provisional	NA|216aa|up_8|NC_009089.1_3293301_3293949_-	COG3314, COG3314, Uncharacterized protein conserved in bacteria [Function unknown]	NA|391aa|up_7|NC_009089.1_3293962_3295135_-	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme	NA|459aa|up_6|NC_009089.1_3295402_3296779_+	NA	NA|177aa|up_5|NC_009089.1_3297714_3298245_-	pfam12641, Flavodoxin_3, Flavodoxin domain	NA|365aa|up_4|NC_009089.1_3298320_3299415_-	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|149aa|up_3|NC_009089.1_3299416_3299863_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|397aa|up_2|NC_009089.1_3300168_3301359_+	PRK06836, PRK06836, pyridoxal phosphate-dependent aminotransferase	NA|321aa|up_1|NC_009089.1_3301528_3302491_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|221aa|up_0|NC_009089.1_3302612_3303275_-	cd20183, M34_PPEP, Pro-Pro endopeptidase (PPEP) and similar proteins; belongs to peptidase family M34	NA|393aa|down_0|NC_009089.1_3306893_3308072_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|925aa|down_1|NC_009089.1_3308696_3311471_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|419aa|down_2|NC_009089.1_3311642_3312899_-	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|501aa|down_3|NC_009089.1_3312970_3314473_-	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]	NA|397aa|down_4|NC_009089.1_3314563_3315754_-	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family	NA|363aa|down_5|NC_009089.1_3315992_3317081_-	COG3949, COG3949, Uncharacterized membrane protein [Function unknown]	NA|233aa|down_6|NC_009089.1_3317365_3318064_-	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|502aa|down_7|NC_009089.1_3318177_3319683_-	cd16956, HATPase_YehU-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli YehU	NA|424aa|down_8|NC_009089.1_3320189_3321461_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|535aa|down_9|NC_009089.1_3322276_3323881_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	19	3396821-3397048	17,11	CRISPRCasFinder,PILER-CR	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTATATTAACTATGTGGTATGTAAA	29,28	0	0	NA	NA	I-A:I-A	3,2	3	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|187aa|up_0|NC_009089.1_3396130_3396691_-,NA|54aa|down_0|NC_009089.1_3398354_3398516_-,NA|59aa|down_4|NC_009089.1_3401167_3401344_-,NA|146aa|down_5|NC_009089.1_3401336_3401774_-,NA|116aa|down_7|NC_009089.1_3402191_3402539_-,NA|134aa|down_8|NC_009089.1_3402532_3402934_-	NA|268aa|up_9|NC_009089.1_3387254_3388058_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|206aa|up_8|NC_009089.1_3388069_3388687_-	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|350aa|up_7|NC_009089.1_3388679_3389729_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|140aa|up_6|NC_009089.1_3389729_3390149_-	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|87aa|up_5|NC_009089.1_3390153_3390414_-	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|657aa|up_4|NC_009089.1_3390427_3392398_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|230aa|up_3|NC_009089.1_3392390_3393080_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|784aa|up_2|NC_009089.1_3393095_3395447_-	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|190aa|up_1|NC_009089.1_3395517_3396087_-	PRK07418, PRK07418, acetolactate synthase large subunit	NA|187aa|up_0|NC_009089.1_3396130_3396691_-	NA	NA|54aa|down_0|NC_009089.1_3398354_3398516_-	NA	NA|147aa|down_1|NC_009089.1_3398856_3399297_-	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|157aa|down_2|NC_009089.1_3399368_3399839_-	pfam09393, DUF2001, Phage tail tube protein	NA|437aa|down_3|NC_009089.1_3399855_3401166_-	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|59aa|down_4|NC_009089.1_3401167_3401344_-	NA	NA|146aa|down_5|NC_009089.1_3401336_3401774_-	NA	NA|142aa|down_6|NC_009089.1_3401766_3402192_-	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|116aa|down_7|NC_009089.1_3402191_3402539_-	NA	NA|134aa|down_8|NC_009089.1_3402532_3402934_-	NA	NA|78aa|down_9|NC_009089.1_3402943_3403177_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	20	3397192-3397617	18,8,12	CRISPRCasFinder,CRT,PILER-CR	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	6,6,4	6	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|187aa|up_0|NC_009089.1_3396130_3396691_-,NA|54aa|down_0|NC_009089.1_3398354_3398516_-,NA|59aa|down_4|NC_009089.1_3401167_3401344_-,NA|146aa|down_5|NC_009089.1_3401336_3401774_-,NA|116aa|down_7|NC_009089.1_3402191_3402539_-,NA|134aa|down_8|NC_009089.1_3402532_3402934_-	NA|268aa|up_9|NC_009089.1_3387254_3388058_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|206aa|up_8|NC_009089.1_3388069_3388687_-	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|350aa|up_7|NC_009089.1_3388679_3389729_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|140aa|up_6|NC_009089.1_3389729_3390149_-	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|87aa|up_5|NC_009089.1_3390153_3390414_-	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|657aa|up_4|NC_009089.1_3390427_3392398_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|230aa|up_3|NC_009089.1_3392390_3393080_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|784aa|up_2|NC_009089.1_3393095_3395447_-	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|190aa|up_1|NC_009089.1_3395517_3396087_-	PRK07418, PRK07418, acetolactate synthase large subunit	NA|187aa|up_0|NC_009089.1_3396130_3396691_-	NA	NA|54aa|down_0|NC_009089.1_3398354_3398516_-	NA	NA|147aa|down_1|NC_009089.1_3398856_3399297_-	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|157aa|down_2|NC_009089.1_3399368_3399839_-	pfam09393, DUF2001, Phage tail tube protein	NA|437aa|down_3|NC_009089.1_3399855_3401166_-	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|59aa|down_4|NC_009089.1_3401167_3401344_-	NA	NA|146aa|down_5|NC_009089.1_3401336_3401774_-	NA	NA|142aa|down_6|NC_009089.1_3401766_3402192_-	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|116aa|down_7|NC_009089.1_3402191_3402539_-	NA	NA|134aa|down_8|NC_009089.1_3402532_3402934_-	NA	NA|78aa|down_9|NC_009089.1_3402943_3403177_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	21	3455483-3456758	19,9,13	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	19,17,16	19	Unclear	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|67aa|up_7|NC_009089.1_3448376_3448577_+,NA|260aa|up_1|NC_009089.1_3453759_3454539_+,NA	NA|740aa|up_9|NC_009089.1_3442723_3444943_-	cd01948, EAL, EAL domain	NA|885aa|up_8|NC_009089.1_3445218_3447873_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|NC_009089.1_3448376_3448577_+	NA	NA|197aa|up_6|NC_009089.1_3448783_3449374_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|NC_009089.1_3449376_3450252_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|NC_009089.1_3450327_3451719_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|NC_009089.1_3451722_3452859_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|NC_009089.1_3452890_3453436_-	pfam02632, BioY, BioY family	NA|260aa|up_1|NC_009089.1_3453759_3454539_+	NA	NA|143aa|up_0|NC_009089.1_3454993_3455422_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|NC_009089.1_3456941_3457208_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|NC_009089.1_3457210_3458191_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|173aa|down_2|NC_009089.1_3458193_3458712_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|NC_009089.1_3458759_3461081_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|NC_009089.1_3461091_3461793_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|NC_009089.1_3461794_3462709_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|626aa|down_6|NC_009089.1_3462710_3464588_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|246aa|down_7|NC_009089.1_3464593_3465331_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|306aa|down_8|NC_009089.1_3465408_3466326_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|NC_009089.1_3466605_3468522_-	pfam02687, FtsX, FtsX-like permease family
GCF_000009205.2_ASM920v2	NC_009089	Clostridioides difficile 630, complete genome	22	4150228-4150313	20	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	AAAGTGCTAAAGCACGTCGCCAAC	24	1	1	4150252-4150289	NC_009089.1_3152421-3152458	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|65aa|down_0|NC_009089.1_4152186_4152381_-	NA|477aa|up_9|NC_009089.1_4137953_4139384_+	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|143aa|up_8|NC_009089.1_4139420_4139849_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|235aa|up_7|NC_009089.1_4140036_4140741_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|278aa|up_6|NC_009089.1_4140763_4141597_-	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase	NA|249aa|up_5|NC_009089.1_4141597_4142344_-	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|298aa|up_4|NC_009089.1_4142421_4143315_-	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown]	NA|312aa|up_3|NC_009089.1_4143311_4144247_-	PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated	NA|230aa|up_2|NC_009089.1_4144249_4144939_-	COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]	NA|470aa|up_1|NC_009089.1_4145069_4146479_-	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|64aa|up_0|NC_009089.1_4146633_4146825_-	pfam04070, DUF378, Domain of unknown function (DUF378)	NA|65aa|down_0|NC_009089.1_4152186_4152381_-	NA	NA|510aa|down_1|NC_009089.1_4152689_4154219_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|160aa|down_2|NC_009089.1_4154233_4154713_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|323aa|down_3|NC_009089.1_4154821_4155790_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|257aa|down_4|NC_009089.1_4155926_4156697_-	PRK13318, PRK13318, type III pantothenate kinase	NA|197aa|down_5|NC_009089.1_4156715_4157306_-	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|323aa|down_6|NC_009089.1_4157489_4158458_-	cd02252, nylC_like, nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC	NA|326aa|down_7|NC_009089.1_4158450_4159428_-	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA|657aa|down_8|NC_009089.1_4159742_4161713_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|463aa|down_9|NC_009089.1_4161746_4163135_-	TIGR02432, tRNAIle-lysidine_synthase, tRNA(Ile)-lysidine synthetase, N-terminal domain
