assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000009105.1_ASM910v1	NC_003116	Neisseria meningitidis Z2491, complete genome	1	68846-68944	1	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	Orphan	GGATTCCCGCCTGCGCGGGAATGACG	26	1	1	68872-68918	NC_003116.1_68513-68559	I-E	1	1	Orphan	DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	NA|82aa|up_5|NC_003116.1_61778_62024_-,NA|132aa|up_4|NC_003116.1_62041_62437_-,NA|82aa|up_3|NC_003116.1_62454_62700_-,NA|162aa|down_6|NC_003116.1_76947_77433_-	NA|242aa|up_9|NC_003116.1_59137_59863_-	COG2360, Aat, Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]	NA|145aa|up_8|NC_003116.1_59932_60367_-	PRK09462, fur, ferric uptake regulator; Provisional	NA|126aa|up_7|NC_003116.1_60585_60963_+	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]	NA|270aa|up_6|NC_003116.1_60972_61782_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|82aa|up_5|NC_003116.1_61778_62024_-	NA	NA|132aa|up_4|NC_003116.1_62041_62437_-	NA	NA|82aa|up_3|NC_003116.1_62454_62700_-	NA	NA|391aa|up_2|NC_003116.1_62707_63880_-	COG0763, LpxB, Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]	NA|331aa|up_1|NC_003116.1_63927_64920_-	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA|920aa|up_0|NC_003116.1_65413_68173_+	PRK10811, rne, ribonuclease E; Reviewed	NA|330aa|down_0|NC_003116.1_68959_69949_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|476aa|down_1|NC_003116.1_70108_71536_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|632aa|down_2|NC_003116.1_71860_73756_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|195aa|down_3|NC_003116.1_73824_74409_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|258aa|down_4|NC_003116.1_75356_76130_-	pfam13614, AAA_31, AAA domain	NA|208aa|down_5|NC_003116.1_76228_76852_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|162aa|down_6|NC_003116.1_76947_77433_-	NA	NA|376aa|down_7|NC_003116.1_77842_78970_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|186aa|down_8|NC_003116.1_79150_79708_+	PRK00083, frr, ribosome recycling factor; Reviewed	NA|249aa|down_9|NC_003116.1_79763_80510_+	pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase
GCF_000009105.1_ASM910v1	NC_003116	Neisseria meningitidis Z2491, complete genome	2	216574-216679	2	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	Orphan	CGAAGGCAAATGCGGCGAGGGCAAATGCGGT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	NA|136aa|up_9|NC_003116.1_201740_202148_-,NA|147aa|down_4|NC_003116.1_219431_219872_+	NA|136aa|up_9|NC_003116.1_201740_202148_-	NA	NA|229aa|up_8|NC_003116.1_202147_202834_-	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins	NA|348aa|up_7|NC_003116.1_202953_203997_+	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|409aa|up_6|NC_003116.1_204159_205386_+	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]	NA|717aa|up_5|NC_003116.1_205671_207822_+	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein	NA|336aa|up_4|NC_003116.1_209577_210585_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|486aa|up_3|NC_003116.1_211061_212519_+	TIGR00924, putative_Di/Tri_peptide_transporter, amino acid/peptide transporter (Peptide:H+ symporter), bacterial	NA|368aa|up_2|NC_003116.1_213430_214534_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|298aa|up_1|NC_003116.1_214636_215530_-	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|150aa|up_0|NC_003116.1_215871_216321_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|281aa|down_0|NC_003116.1_216818_217661_+	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown]	NA|249aa|down_1|NC_003116.1_217650_218397_+	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown]	NA|196aa|down_2|NC_003116.1_218418_219006_+	PRK12532, PRK12532, RNA polymerase sigma factor; Provisional	NA|60aa|down_3|NC_003116.1_219011_219191_+	pfam13490, zf-HC2, Putative zinc-finger	NA|147aa|down_4|NC_003116.1_219431_219872_+	NA	NA|201aa|down_5|NC_003116.1_222046_222649_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|424aa|down_6|NC_003116.1_222682_223954_-	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|106aa|down_7|NC_003116.1_224110_224428_+	pfam14131, DUF4298, Domain of unknown function (DUF4298)	NA|204aa|down_8|NC_003116.1_224479_225091_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|312aa|down_9|NC_003116.1_225153_226089_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
GCF_000009105.1_ASM910v1	NC_003116	Neisseria meningitidis Z2491, complete genome	3	277640-277736	3	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	Orphan	AGACCTTGGGATAACGGCAATATTCAAAG	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	NA,NA|72aa|down_6|NC_003116.1_293228_293444_-	NA|422aa|up_9|NC_003116.1_267837_269103_+	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme	NA|110aa|up_8|NC_003116.1_269174_269504_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|457aa|up_7|NC_003116.1_269580_270951_-	TIGR01173, Bifunctional_glmU_protein_	NA|91aa|up_6|NC_003116.1_271005_271278_-	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site	NA|244aa|up_5|NC_003116.1_271253_271985_-	TIGR01993, Suppressor_of_disruption_of_TFIIS, pyrimidine 5'-nucleotidase	NA|334aa|up_4|NC_003116.1_272043_273045_+	TIGR01254, Thiamine-binding_periplasmic_protein, ABC transporter periplasmic binding protein, thiB subfamily	NA|283aa|up_3|NC_003116.1_273138_273987_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|162aa|up_2|NC_003116.1_274012_274498_+	pfam02464, CinA, Competence-damaged protein	NA|523aa|up_1|NC_003116.1_274599_276168_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|422aa|up_0|NC_003116.1_276313_277579_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|95aa|down_0|NC_003116.1_278167_278452_+	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	NA|1012aa|down_1|NC_003116.1_279214_282250_+	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]	NA|1390aa|down_2|NC_003116.1_283683_287853_-	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|616aa|down_3|NC_003116.1_287907_289755_-	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|410aa|down_4|NC_003116.1_290319_291549_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|498aa|down_5|NC_003116.1_291660_293154_+	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B	NA|72aa|down_6|NC_003116.1_293228_293444_-	NA	NA|72aa|down_7|NC_003116.1_293436_293652_-	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|448aa|down_8|NC_003116.1_293858_295202_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|267aa|down_9|NC_003116.1_295326_296127_+	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
GCF_000009105.1_ASM910v1	NC_003116	Neisseria meningitidis Z2491, complete genome	4	282800-282975	4	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	Orphan	CTAGATTCCCGCTTTCGCGGGAATGACGG	29	2	27	282829-282873|282829-282873|282829-282873|282829-282873|282829-282873|282829-282873|282829-282873|282829-282873|282829-282873|282829-282873|282829-282873|282829-282873|282829-282873|282829-282873|282829-282873|282829-282873|282903-282945|282903-282945|282903-282945|282903-282945|282903-282945|282903-282945|282903-282945|282903-282945|282903-282945|282903-282945|282903-282945	NC_003116.1_248265-248309|NC_003116.1_583343-583299|NC_003116.1_862498-862542|NC_003116.1_862737-862781|NC_003116.1_1630117-1630161|NC_003116.1_1630417-1630461|NC_003116.1_1675041-1674997|NC_003116.1_1675657-1675613|NC_003116.1_1683668-1683624|NC_003116.1_1961763-1961719|NC_003116.1_1968578-1968534|NC_003116.1_208788-208744|NC_003116.1_368627-368671|NC_003116.1_369219-369263|NC_003116.1_1675313-1675269|NC_003116.1_1961312-1961268|NC_003116.1_1630191-1630233|NC_003116.1_1675583-1675541|NC_003116.1_1681837-1681795|NC_003116.1_1682060-1682018|NC_003116.1_1682481-1682439|NC_003116.1_1682704-1682662|NC_003116.1_1682800-1682758|NC_003116.1_1683052-1683010|NC_003116.1_1961689-1961647|NC_003116.1_1968504-1968462|NC_003116.1_1969000-1968958	I-E	2	2	Orphan	DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	NA,NA|72aa|down_4|NC_003116.1_293228_293444_-,NA|125aa|down_9|NC_003116.1_298109_298484_-	NA|457aa|up_9|NC_003116.1_269580_270951_-	TIGR01173, Bifunctional_glmU_protein_	NA|91aa|up_8|NC_003116.1_271005_271278_-	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site	NA|244aa|up_7|NC_003116.1_271253_271985_-	TIGR01993, Suppressor_of_disruption_of_TFIIS, pyrimidine 5'-nucleotidase	NA|334aa|up_6|NC_003116.1_272043_273045_+	TIGR01254, Thiamine-binding_periplasmic_protein, ABC transporter periplasmic binding protein, thiB subfamily	NA|283aa|up_5|NC_003116.1_273138_273987_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|162aa|up_4|NC_003116.1_274012_274498_+	pfam02464, CinA, Competence-damaged protein	NA|523aa|up_3|NC_003116.1_274599_276168_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|422aa|up_2|NC_003116.1_276313_277579_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|95aa|up_1|NC_003116.1_278167_278452_+	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	NA|1012aa|up_0|NC_003116.1_279214_282250_+	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]	NA|1390aa|down_0|NC_003116.1_283683_287853_-	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|616aa|down_1|NC_003116.1_287907_289755_-	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|410aa|down_2|NC_003116.1_290319_291549_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|498aa|down_3|NC_003116.1_291660_293154_+	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B	NA|72aa|down_4|NC_003116.1_293228_293444_-	NA	NA|72aa|down_5|NC_003116.1_293436_293652_-	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|448aa|down_6|NC_003116.1_293858_295202_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|267aa|down_7|NC_003116.1_295326_296127_+	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]	NA|329aa|down_8|NC_003116.1_296166_297153_+	COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|125aa|down_9|NC_003116.1_298109_298484_-	NA
GCF_000009105.1_ASM910v1	NC_003116	Neisseria meningitidis Z2491, complete genome	5	283276-283359	5	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	Orphan	CTAGATTCCCGCTTTCGCGGGAATGACGG	29	1	9	283305-283330|283305-283330|283305-283330|283305-283330|283305-283330|283305-283330|283305-283330|283305-283330|283305-283330	NC_003116.1_879835-879860|NC_003116.1_880676-880701|NC_003116.1_1051272-1051247|NC_003116.1_1052024-1051999|NC_003116.1_1555071-1555096|NC_003116.1_1555588-1555613|NC_003116.1_881189-881214|NC_003116.1_1554323-1554348|NC_003116.1_1556370-1556395	I-E	1	1	Orphan	DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	NA,NA|72aa|down_4|NC_003116.1_293228_293444_-,NA|125aa|down_9|NC_003116.1_298109_298484_-	NA|457aa|up_9|NC_003116.1_269580_270951_-	TIGR01173, Bifunctional_glmU_protein_	NA|91aa|up_8|NC_003116.1_271005_271278_-	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site	NA|244aa|up_7|NC_003116.1_271253_271985_-	TIGR01993, Suppressor_of_disruption_of_TFIIS, pyrimidine 5'-nucleotidase	NA|334aa|up_6|NC_003116.1_272043_273045_+	TIGR01254, Thiamine-binding_periplasmic_protein, ABC transporter periplasmic binding protein, thiB subfamily	NA|283aa|up_5|NC_003116.1_273138_273987_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|162aa|up_4|NC_003116.1_274012_274498_+	pfam02464, CinA, Competence-damaged protein	NA|523aa|up_3|NC_003116.1_274599_276168_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|422aa|up_2|NC_003116.1_276313_277579_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|95aa|up_1|NC_003116.1_278167_278452_+	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	NA|1012aa|up_0|NC_003116.1_279214_282250_+	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]	NA|1390aa|down_0|NC_003116.1_283683_287853_-	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|616aa|down_1|NC_003116.1_287907_289755_-	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|410aa|down_2|NC_003116.1_290319_291549_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|498aa|down_3|NC_003116.1_291660_293154_+	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B	NA|72aa|down_4|NC_003116.1_293228_293444_-	NA	NA|72aa|down_5|NC_003116.1_293436_293652_-	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|448aa|down_6|NC_003116.1_293858_295202_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|267aa|down_7|NC_003116.1_295326_296127_+	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]	NA|329aa|down_8|NC_003116.1_296166_297153_+	COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|125aa|down_9|NC_003116.1_298109_298484_-	NA
GCF_000009105.1_ASM910v1	NC_003116	Neisseria meningitidis Z2491, complete genome	6	374018-374122	6	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	Orphan	GATTCCCACTTTCGTGGGAATGACGG	26	0	0	NA	NA	I-E	1	1	Orphan	DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	NA|70aa|up_7|NC_003116.1_363125_363335_-,NA|62aa|down_0|NC_003116.1_374269_374455_-	NA|90aa|up_9|NC_003116.1_360864_361134_+	COG1925, FruB, Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism]	NA|592aa|up_8|NC_003116.1_361133_362909_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|70aa|up_7|NC_003116.1_363125_363335_-	NA	NA|313aa|up_6|NC_003116.1_363352_364291_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|292aa|up_5|NC_003116.1_364299_365175_-	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|634aa|up_4|NC_003116.1_365772_367674_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|330aa|up_3|NC_003116.1_369453_370443_-	pfam00267, Porin_1, Gram-negative porin	NA|106aa|up_2|NC_003116.1_371687_372005_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|80aa|up_1|NC_003116.1_371998_372238_-	COG2336, MazE, Growth regulator [Signal transduction mechanisms]	NA|266aa|up_0|NC_003116.1_372360_373158_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|62aa|down_0|NC_003116.1_374269_374455_-	NA	NA|231aa|down_1|NC_003116.1_374565_375258_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|248aa|down_2|NC_003116.1_375254_375998_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|188aa|down_3|NC_003116.1_376026_376590_-	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA|551aa|down_4|NC_003116.1_377327_378980_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|414aa|down_5|NC_003116.1_379049_380291_-	PRK10483, PRK10483, tryptophan permease; Provisional	NA|243aa|down_6|NC_003116.1_380442_381171_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|306aa|down_7|NC_003116.1_381206_382124_+	TIGR00938, homoserine_kinase_homolog, homoserine kinase, Neisseria type	NA|173aa|down_8|NC_003116.1_382462_382981_-	TIGR01313, Thermosensitive_gluconokinase, carbohydrate kinase, thermoresistant glucokinase family	NA|462aa|down_9|NC_003116.1_383000_384386_-	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
GCF_000009105.1_ASM910v1	NC_003116	Neisseria meningitidis Z2491, complete genome	7	463271-463354	7	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	Orphan	CTAGATTCCCGCTTTCGCGGGAATGACGG	29	1	9	463300-463325|463300-463325|463300-463325|463300-463325|463300-463325|463300-463325|463300-463325|463300-463325|463300-463325	NC_003116.1_879835-879860|NC_003116.1_880676-880701|NC_003116.1_1051272-1051247|NC_003116.1_1052024-1051999|NC_003116.1_1555071-1555096|NC_003116.1_1555588-1555613|NC_003116.1_881189-881214|NC_003116.1_1554323-1554348|NC_003116.1_1556370-1556395	I-E	1	1	Orphan	DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	NA,NA|67aa|down_2|NC_003116.1_469594_469795_-,NA|130aa|down_3|NC_003116.1_469803_470193_-	NA|407aa|up_9|NC_003116.1_447547_448768_+	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase	NA|31aa|up_8|NC_003116.1_448827_448920_-	pfam16951, MaAIMP_sms, Putative methionine and alanine importer, small subunit	NA|512aa|up_7|NC_003116.1_448916_450452_-	cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain	NA|218aa|up_6|NC_003116.1_450664_451318_-	COG3676, COG3676, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|97aa|up_5|NC_003116.1_451546_451837_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|545aa|up_4|NC_003116.1_451929_453564_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|811aa|up_3|NC_003116.1_454151_456584_-	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|358aa|up_2|NC_003116.1_456614_457688_-	pfam16960, HpuA, Haemoglobin-haptoglobin utilisation, porphyrin transporter	NA|506aa|up_1|NC_003116.1_458955_460473_+	pfam04575, DUF560, Protein of unknown function (DUF560)	NA|594aa|up_0|NC_003116.1_460531_462313_-	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]	NA|1069aa|down_0|NC_003116.1_463712_466919_-	cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases	NA|481aa|down_1|NC_003116.1_468117_469560_-	cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like	NA|67aa|down_2|NC_003116.1_469594_469795_-	NA	NA|130aa|down_3|NC_003116.1_469803_470193_-	NA	NA|306aa|down_4|NC_003116.1_470400_471318_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|267aa|down_5|NC_003116.1_471490_472291_+	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|259aa|down_6|NC_003116.1_472338_473115_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|165aa|down_7|NC_003116.1_473165_473660_+	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD	NA|197aa|down_8|NC_003116.1_473696_474287_+	COG2854, Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|93aa|down_9|NC_003116.1_474343_474622_+	COG3113, COG3113, Predicted NTP binding protein (contains STAS domain) [General function prediction only]
GCF_000009105.1_ASM910v1	NC_003116	Neisseria meningitidis Z2491, complete genome	8	506126-506235	8	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	Orphan	TTTCTAGATTCCCGCTTTTGCGGGAATGATGGCGG	35	1	1	506161-506200	NC_003116.1_506975-507014	I-E	1	1	Orphan	DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	NA|46aa|up_1|NC_003116.1_504233_504371_+,NA|68aa|down_9|NC_003116.1_519357_519561_-	NA|292aa|up_9|NC_003116.1_495703_496579_+	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|466aa|up_8|NC_003116.1_496616_498014_+	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|141aa|up_7|NC_003116.1_498024_498447_+	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|302aa|up_6|NC_003116.1_498801_499707_+	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|137aa|up_5|NC_003116.1_499783_500194_+	COG3171, COG3171, Uncharacterized protein conserved in bacteria [Function unknown]	NA|688aa|up_4|NC_003116.1_500214_502278_+	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|363aa|up_3|NC_003116.1_502294_503383_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|280aa|up_2|NC_003116.1_503382_504222_+	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]	NA|46aa|up_1|NC_003116.1_504233_504371_+	NA	NA|269aa|up_0|NC_003116.1_504370_505177_+	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]	NA|242aa|down_0|NC_003116.1_507125_507851_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|265aa|down_1|NC_003116.1_508059_508854_+	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|164aa|down_2|NC_003116.1_511313_511805_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|249aa|down_3|NC_003116.1_512368_513115_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|522aa|down_4|NC_003116.1_513176_514742_-	PRK00074, guaA, GMP synthase; Reviewed	NA|622aa|down_5|NC_003116.1_514841_516707_-	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA	NA|309aa|down_6|NC_003116.1_516844_517771_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|122aa|down_7|NC_003116.1_517956_518322_-	COG3326, COG3326, Predicted membrane protein [Function unknown]	NA|321aa|down_8|NC_003116.1_518368_519331_-	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|68aa|down_9|NC_003116.1_519357_519561_-	NA
GCF_000009105.1_ASM910v1	NC_003116	Neisseria meningitidis Z2491, complete genome	9	608413-609504	1,9,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas9	DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	 Type II-B,Type II-B,Type II-A, or Type II-C?,Type II-C	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT,GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT,GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	36,36,36	0	0	NA	NA	NA:NA:NA	16,16,16	16	TypeII-B,TypeII-B,TypeII-A,orTypeII-C?,TypeII-C	DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	NA,NA|70aa|down_5|NC_003116.1_618570_618780_+	NA|144aa|up_9|NC_003116.1_592269_592701_-	COG2510, COG2510, Predicted membrane protein [Function unknown]	NA|559aa|up_8|NC_003116.1_592875_594552_+	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	NA|364aa|up_7|NC_003116.1_594666_595758_+	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|623aa|up_6|NC_003116.1_596019_597888_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|432aa|up_5|NC_003116.1_597949_599245_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|307aa|up_4|NC_003116.1_599543_600464_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|930aa|up_3|NC_003116.1_600605_603395_+	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|166aa|up_2|NC_003116.1_604581_605079_+	PRK00376, lspA, lipoprotein signal peptidase	NA|323aa|up_1|NC_003116.1_605107_606076_+	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|186aa|up_0|NC_003116.1_606163_606721_-	cd07533, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar to Parvibaculum lavamentivorans  HAD-superfamily hydrolase, subfamily IA, variant 1	cas2|109aa|down_0|NC_003116.1_609567_609894_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|305aa|down_1|NC_003116.1_609886_610801_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1083aa|down_2|NC_003116.1_610867_614116_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|1145aa|down_3|NC_003116.1_614393_617828_-	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated	NA|122aa|down_4|NC_003116.1_618227_618593_+	COG2501, COG2501, S4-like RNA binding protein [Replication, recombination, and repair]	NA|70aa|down_5|NC_003116.1_618570_618780_+	NA	NA|279aa|down_6|NC_003116.1_619075_619912_+	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|431aa|down_7|NC_003116.1_619963_621256_-	COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]	NA|637aa|down_8|NC_003116.1_621311_623222_-	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|392aa|down_9|NC_003116.1_623269_624445_-	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
GCF_000009105.1_ASM910v1	NC_003116	Neisseria meningitidis Z2491, complete genome	10	632195-632419	10	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	Orphan	CCGTCATTCCCGCGCAGGCGGGAATC	26	1	11	632344-632393|632344-632393|632344-632393|632344-632393|632344-632393|632344-632393|632344-632393|632344-632393|632344-632393|632344-632393|632344-632393	NC_003116.1_431286-431237|NC_003116.1_458480-458529|NC_003116.1_729285-729236|NC_003116.1_1065003-1064954|NC_003116.1_1554121-1554170|NC_003116.1_1554869-1554918|NC_003116.1_1814413-1814364|NC_003116.1_1814974-1814925|NC_003116.1_1983978-1983929|NC_003116.1_1984885-1984836|NC_003116.1_1985193-1985144	I-E	3	3	Orphan	DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	NA,NA	NA|279aa|up_9|NC_003116.1_619075_619912_+	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|431aa|up_8|NC_003116.1_619963_621256_-	COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]	NA|637aa|up_7|NC_003116.1_621311_623222_-	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|392aa|up_6|NC_003116.1_623269_624445_-	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|414aa|up_5|NC_003116.1_624522_625764_-	pfam02397, Bac_transf, Bacterial sugar transferase	NA|388aa|up_4|NC_003116.1_625756_626920_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|474aa|up_3|NC_003116.1_628017_629439_-	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]	NA|370aa|up_2|NC_003116.1_629633_630743_-	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|155aa|up_1|NC_003116.1_630774_631239_-	COG1327, COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]	NA|281aa|up_0|NC_003116.1_631268_632111_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|360aa|down_0|NC_003116.1_632754_633834_-	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed	NA|171aa|down_1|NC_003116.1_633913_634426_-	PRK00131, aroK, shikimate kinase; Reviewed	NA|762aa|down_2|NC_003116.1_635587_637873_-	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion]	NA|182aa|down_3|NC_003116.1_637891_638437_-	COG3168, PilP, Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]	NA|216aa|down_4|NC_003116.1_638454_639102_-	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]	NA|200aa|down_5|NC_003116.1_639102_639702_-	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]	NA|372aa|down_6|NC_003116.1_639704_640820_-	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]	NA|799aa|down_7|NC_003116.1_640971_643368_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|210aa|down_8|NC_003116.1_643488_644118_-	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|208aa|down_9|NC_003116.1_644323_644947_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]
GCF_000009105.1_ASM910v1	NC_003116	Neisseria meningitidis Z2491, complete genome	11	939474-939614	11	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	Orphan	AAGGCGAGGCAACGCTGTACTGGTTTTTGTTAATCCACTATA	42	1	169	939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572|939516-939572	NC_003116.1_38010-38066|NC_003116.1_51815-51871|NC_003116.1_75167-75223|NC_003116.1_77523-77579|NC_003116.1_156989-157045|NC_003116.1_162025-162081|NC_003116.1_162729-162785|NC_003116.1_212823-212879|NC_003116.1_242728-242784|NC_003116.1_335581-335525|NC_003116.1_370870-370926|NC_003116.1_371560-371616|NC_003116.1_382284-382340|NC_003116.1_384612-384556|NC_003116.1_427906-427962|NC_003116.1_428300-428356|NC_003116.1_432335-432279|NC_003116.1_441863-441807|NC_003116.1_457885-457829|NC_003116.1_462782-462726|NC_003116.1_463527-463471|NC_003116.1_467946-467890|NC_003116.1_477995-478051|NC_003116.1_485283-485227|NC_003116.1_517902-517958|NC_003116.1_522212-522156|NC_003116.1_564907-564851|NC_003116.1_568684-568740|NC_003116.1_607582-607638|NC_003116.1_652101-652157|NC_003116.1_655314-655258|NC_003116.1_663546-663602|NC_003116.1_729591-729647|NC_003116.1_791356-791300|NC_003116.1_803167-803223|NC_003116.1_804404-804460|NC_003116.1_839948-840004|NC_003116.1_862130-862074|NC_003116.1_863286-863342|NC_003116.1_892015-891959|NC_003116.1_896645-896701|NC_003116.1_909661-909717|NC_003116.1_921123-921179|NC_003116.1_961627-961683|NC_003116.1_1016652-1016596|NC_003116.1_1026375-1026431|NC_003116.1_1054647-1054703|NC_003116.1_1058238-1058294|NC_003116.1_1059404-1059460|NC_003116.1_1065474-1065530|NC_003116.1_1085397-1085341|NC_003116.1_1131756-1131700|NC_003116.1_1133974-1133918|NC_003116.1_1153386-1153442|NC_003116.1_1169069-1169125|NC_003116.1_1185745-1185689|NC_003116.1_1195142-1195198|NC_003116.1_1203944-1203888|NC_003116.1_1204199-1204143|NC_003116.1_1218208-1218152|NC_003116.1_1245141-1245085|NC_003116.1_1312840-1312896|NC_003116.1_1326596-1326652|NC_003116.1_1329724-1329668|NC_003116.1_1355478-1355534|NC_003116.1_1370870-1370814|NC_003116.1_1458314-1458370|NC_003116.1_1467639-1467583|NC_003116.1_1468035-1467979|NC_003116.1_1487505-1487449|NC_003116.1_1508528-1508584|NC_003116.1_1515862-1515918|NC_003116.1_1541674-1541730|NC_003116.1_1554017-1553961|NC_003116.1_1559486-1559542|NC_003116.1_1600818-1600762|NC_003116.1_1610130-1610186|NC_003116.1_1615145-1615089|NC_003116.1_1622102-1622046|NC_003116.1_1625593-1625649|NC_003116.1_1626818-1626874|NC_003116.1_1641557-1641613|NC_003116.1_1683835-1683891|NC_003116.1_1690296-1690240|NC_003116.1_1712318-1712374|NC_003116.1_1754248-1754192|NC_003116.1_1859206-1859150|NC_003116.1_1900252-1900308|NC_003116.1_1940773-1940829|NC_003116.1_1960652-1960708|NC_003116.1_1982477-1982421|NC_003116.1_1983709-1983765|NC_003116.1_1984616-1984672|NC_003116.1_1996102-1996046|NC_003116.1_2036488-2036544|NC_003116.1_2041522-2041466|NC_003116.1_2051829-2051885|NC_003116.1_2054457-2054401|NC_003116.1_2058438-2058382|NC_003116.1_2083813-2083869|NC_003116.1_2115121-2115177|NC_003116.1_2129060-2129116|NC_003116.1_2139291-2139347|NC_003116.1_2154298-2154354|NC_003116.1_2169417-2169473|NC_003116.1_36634-36690|NC_003116.1_53552-53608|NC_003116.1_71728-71784|NC_003116.1_210715-210771|NC_003116.1_257427-257483|NC_003116.1_263873-263817|NC_003116.1_311703-311647|NC_003116.1_367802-367858|NC_003116.1_373476-373420|NC_003116.1_458749-458693|NC_003116.1_509458-509514|NC_003116.1_530526-530470|NC_003116.1_545000-545056|NC_003116.1_701790-701734|NC_003116.1_716896-716840|NC_003116.1_729016-729072|NC_003116.1_735912-735856|NC_003116.1_801313-801257|NC_003116.1_810454-810510|NC_003116.1_812279-812223|NC_003116.1_832127-832183|NC_003116.1_849379-849435|NC_003116.1_880255-880199|NC_003116.1_910516-910460|NC_003116.1_990499-990555|NC_003116.1_1028954-1028898|NC_003116.1_1030314-1030258|NC_003116.1_1071614-1071558|NC_003116.1_1079788-1079732|NC_003116.1_1142554-1142498|NC_003116.1_1190625-1190569|NC_003116.1_1237717-1237661|NC_003116.1_1269496-1269440|NC_003116.1_1271791-1271847|NC_003116.1_1352141-1352085|NC_003116.1_1383991-1384047|NC_003116.1_1401789-1401845|NC_003116.1_1412464-1412408|NC_003116.1_1480819-1480763|NC_003116.1_1522453-1522397|NC_003116.1_1544377-1544321|NC_003116.1_1551861-1551917|NC_003116.1_1630789-1630733|NC_003116.1_1640984-1640928|NC_003116.1_1719682-1719738|NC_003116.1_1765957-1765901|NC_003116.1_1814144-1814200|NC_003116.1_1868056-1868000|NC_003116.1_1895289-1895233|NC_003116.1_1896849-1896905|NC_003116.1_1901268-1901324|NC_003116.1_1902119-1902175|NC_003116.1_1908344-1908288|NC_003116.1_1973477-1973421|NC_003116.1_205543-205599|NC_003116.1_250105-250049|NC_003116.1_290173-290117|NC_003116.1_335165-335109|NC_003116.1_853734-853678|NC_003116.1_1064734-1064790|NC_003116.1_1436928-1436872|NC_003116.1_1549828-1549884|NC_003116.1_1556538-1556482|NC_003116.1_1891725-1891669	NA	1	1	Orphan	DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	NA|99aa|up_3|NC_003116.1_936191_936488_-,NA|202aa|up_1|NC_003116.1_937472_938078_+,NA	NA|67aa|up_9|NC_003116.1_930082_930283_+	COG2906, Bfd, Bacterioferritin-associated ferredoxin [Inorganic ion transport and metabolism]	NA|78aa|up_8|NC_003116.1_930448_930682_+	pfam05768, DUF836, Glutaredoxin-like domain (DUF836)	NA|288aa|up_7|NC_003116.1_931155_932019_-	TIGR01214, dTDP-4-keto-L-rhamnose_reductase, dTDP-4-dehydrorhamnose reductase	NA|288aa|up_6|NC_003116.1_932216_933080_+	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|708aa|up_5|NC_003116.1_933313_935437_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|223aa|up_4|NC_003116.1_935509_936178_-	COG2836, COG2836, Uncharacterized conserved protein [Function unknown]	NA|99aa|up_3|NC_003116.1_936191_936488_-	NA	NA|284aa|up_2|NC_003116.1_936624_937476_+	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|202aa|up_1|NC_003116.1_937472_938078_+	NA	NA|311aa|up_0|NC_003116.1_938271_939204_+	TIGR01139, Cysteine_synthase, cysteine synthase A	NA|300aa|down_0|NC_003116.1_939769_940669_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|340aa|down_1|NC_003116.1_940933_941953_-	PRK10861, PRK10861, signal peptidase I	NA|598aa|down_2|NC_003116.1_942095_943889_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|234aa|down_3|NC_003116.1_944033_944735_-	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|377aa|down_4|NC_003116.1_944902_946033_+	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]	NA|326aa|down_5|NC_003116.1_946066_947044_+	PRK08699, PRK08699, DNA polymerase III subunit delta'; Validated	NA|117aa|down_6|NC_003116.1_947047_947398_+	COG3215, PilZ, Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]	NA|260aa|down_7|NC_003116.1_947402_948182_+	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|49aa|down_8|NC_003116.1_948290_948437_+	COG3042, Hlx, Putative hemolysin [General function prediction only]	NA|104aa|down_9|NC_003116.1_948537_948849_+	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family
GCF_000009105.1_ASM910v1	NC_003116	Neisseria meningitidis Z2491, complete genome	12	1736590-1736699	12	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	Orphan	TTGCGTAGGGTGGGCTTCAGCCCACC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	NA|244aa|up_1|NC_003116.1_1732699_1733431_+,NA|104aa|down_1|NC_003116.1_1738845_1739157_+,NA|67aa|down_2|NC_003116.1_1739160_1739361_+,NA|77aa|down_3|NC_003116.1_1739598_1739829_+,NA|101aa|down_4|NC_003116.1_1739856_1740159_+	NA|351aa|up_9|NC_003116.1_1722396_1723449_-	PRK11778, PRK11778, putative inner membrane peptidase; Provisional	NA|188aa|up_8|NC_003116.1_1724295_1724859_-	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|112aa|up_7|NC_003116.1_1725669_1726005_-	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|302aa|up_6|NC_003116.1_1726133_1727039_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|163aa|up_5|NC_003116.1_1727100_1727589_-	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site	NA|301aa|up_4|NC_003116.1_1727735_1728638_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|377aa|up_3|NC_003116.1_1728678_1729809_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|875aa|up_2|NC_003116.1_1730013_1732638_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|244aa|up_1|NC_003116.1_1732699_1733431_+	NA	NA|804aa|up_0|NC_003116.1_1734139_1736551_+	COG1002, COG1002, Type II restriction enzyme, methylase subunits [Defense mechanisms]	NA|405aa|down_0|NC_003116.1_1737619_1738834_+	COG2946, COG2946, Putative phage replication protein RstA [DNA replication, recombination, and repair]	NA|104aa|down_1|NC_003116.1_1738845_1739157_+	NA	NA|67aa|down_2|NC_003116.1_1739160_1739361_+	NA	NA|77aa|down_3|NC_003116.1_1739598_1739829_+	NA	NA|101aa|down_4|NC_003116.1_1739856_1740159_+	NA	NA|535aa|down_5|NC_003116.1_1740505_1742110_+	pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein	NA|95aa|down_6|NC_003116.1_1742412_1742697_+	pfam10734, DUF2523, Protein of unknown function (DUF2523)	NA|396aa|down_7|NC_003116.1_1742697_1743885_+	pfam05707, Zot, Zonular occludens toxin (Zot)	NA|319aa|down_8|NC_003116.1_1744099_1745056_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|228aa|down_9|NC_003116.1_1745394_1746078_-	PRK14118, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase
GCF_000009105.1_ASM910v1	NC_003116	Neisseria meningitidis Z2491, complete genome	13	1759786-1759883	13	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	Orphan	CGTTATTCCCGCGCAGGCGGGAATC	25	1	2	1759811-1759858|1759811-1759858	NC_003116.1_758326-758373|NC_003116.1_758679-758726	I-E	1	1	Orphan	DEDDh,cas2,cas1,cas9,cas3,WYL,DinG	NA|254aa|up_4|NC_003116.1_1754390_1755152_-,NA|84aa|up_3|NC_003116.1_1755251_1755503_+,NA|66aa|down_1|NC_003116.1_1762225_1762423_-,NA|280aa|down_8|NC_003116.1_1768545_1769385_-,NA|163aa|down_9|NC_003116.1_1769732_1770221_-	NA|506aa|up_9|NC_003116.1_1748696_1750214_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|156aa|up_8|NC_003116.1_1750265_1750733_+	cd19926, REC_PilR, phosphoacceptor receiver (REC) domain of type 4 fimbriae expression regulatory protein PilR and similar proteins	NA|251aa|up_7|NC_003116.1_1750836_1751589_+	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase	NA|69aa|up_6|NC_003116.1_1752622_1752829_-	pfam10981, DUF2788, Protein of unknown function (DUF2788)	NA|390aa|up_5|NC_003116.1_1752923_1754093_-	TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase	NA|254aa|up_4|NC_003116.1_1754390_1755152_-	NA	NA|84aa|up_3|NC_003116.1_1755251_1755503_+	NA	NA|269aa|up_2|NC_003116.1_1755554_1756361_+	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|508aa|up_1|NC_003116.1_1756667_1758191_+	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]	NA|471aa|up_0|NC_003116.1_1758288_1759701_+	PRK09496, trkA, Trk system potassium transporter TrkA	NA|322aa|down_0|NC_003116.1_1760004_1760970_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|66aa|down_1|NC_003116.1_1762225_1762423_-	NA	NA|269aa|down_2|NC_003116.1_1762483_1763290_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|290aa|down_3|NC_003116.1_1763339_1764209_-	PRK12335, PRK12335, tellurite resistance protein TehB; Provisional	NA|146aa|down_4|NC_003116.1_1764322_1764760_+	PRK00203, rnhA, ribonuclease H; Reviewed	NA|135aa|down_5|NC_003116.1_1766061_1766466_+	pfam01230, HIT, HIT domain	NA|395aa|down_6|NC_003116.1_1766505_1767690_+	PRK11253, ldcA, L,D-carboxypeptidase A; Provisional	NA|178aa|down_7|NC_003116.1_1767752_1768286_-	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]	NA|280aa|down_8|NC_003116.1_1768545_1769385_-	NA	NA|163aa|down_9|NC_003116.1_1769732_1770221_-	NA
