The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_003143	Yersinia pestis CO92, complete genome	4653728	80446	130315	4653728	transposase,protease,tRNA	Bacillus_phage(22.22%)	41	NA	NA
WP_002208973.1|80446_80935_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_002208972.1|81123_82188_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA	NA	NA	NA	NA
WP_002208971.1|82236_83613_-	envelope stress sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.4	1.5e-17
WP_002208970.1|83609_84308_-	envelope stress response regulator transcription factor CpxR	NA	Q6XM27	Feldmannia_irregularis_virus	29.5	1.8e-06
WP_002208969.1|84481_84970_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA	NA
WP_002353252.1|85686_86607_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	54.3	8.6e-73
WP_002208967.1|87168_88071_+	CDF family cation-efflux transporter FieF	NA	NA	NA	NA	NA
WP_002208966.1|88288_89272_+	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_002208965.1|89492_90482_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002218867.1|90731_91508_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002208963.1|91625_93053_-	anion permease	NA	NA	NA	NA	NA
WP_002208962.1|93118_93832_-	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_002208961.1|93828_94566_-	PIG-L family deacetylase	NA	NA	NA	NA	NA
WP_002208960.1|94702_95938_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002208959.1|96169_96937_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_002208958.1|97065_97680_-	DUF1454 family protein	NA	NA	NA	NA	NA
WP_002208957.1|97848_98283_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_002208956.1|98623_99370_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
WP_002208954.1|101531_102380_-	aquaporin family protein	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	27.5	3.2e-13
WP_002208953.1|103007_103247_+	septal ring assembly protein ZapB	NA	NA	NA	NA	NA
WP_002213759.1|103454_103913_-|transposase	IS200/IS605-like element IS1541A family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_001297096.1|105644_106424_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_002430066.1|106423_107446_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.4	6.0e-200
WP_002208949.1|108357_109650_-	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_002215873.1|109862_110102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002228141.1|110731_111316_+	DUF4232 domain-containing protein	NA	NA	NA	NA	NA
WP_002208945.1|111432_111918_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA	NA
WP_002208944.1|112059_112977_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_002208943.1|113212_114544_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.8	1.2e-43
WP_002208942.1|114614_115139_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_002208941.1|115238_116084_-	cell division protein FtsN	NA	NA	NA	NA	NA
WP_002216730.1|116149_117178_-	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA	NA
WP_002208938.1|117530_119729_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_002216737.1|119971_120187_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_002208936.1|120747_121203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002208935.1|121551_121869_-	met regulon transcriptional regulator MetJ	NA	NA	NA	NA	NA
WP_002208934.1|123408_125844_+	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA	NA
WP_002208933.1|126076_126961_+	methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
WP_100067904.1|127138_128493_-|transposase	IS3-like element IS1661 family transposase	transposase	A0A1B1P773	Bacillus_phage	44.7	1.1e-55
WP_002208930.1|128685_129444_-	DeoR/GlpR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002216348.1|129478_130315_-|protease	rhomboid family intramembrane serine protease GlpG	protease	NA	NA	NA	NA
>prophage 2
NC_003143	Yersinia pestis CO92, complete genome	4653728	504734	551206	4653728	plate,transposase,tRNA	Helicobacter_phage(28.57%)	40	NA	NA
WP_002210509.1|504734_507551_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	26.1	1.0e-63
WP_002210508.1|507550_508060_+	signal peptidase II	NA	NA	NA	NA	NA
WP_002228112.1|508127_508586_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_002210506.1|508566_509520_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA	NA
WP_002213775.1|509901_510360_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002210504.1|510812_511634_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_002224759.1|512106_513282_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	34.3	6.9e-51
WP_002210502.1|513297_516531_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_002210501.1|516758_517373_-	LysE family translocator	NA	NA	NA	NA	NA
WP_002210499.1|517696_518497_+	threonine/serine exporter ThrE family protein	NA	NA	NA	NA	NA
WP_002210498.1|518493_518949_+	threonine/serine exporter	NA	NA	NA	NA	NA
WP_002210497.1|519098_519581_+	type 3 dihydrofolate reductase	NA	A0A219UQN5	Bacillus_phage	42.6	4.7e-30
WP_002213775.1|519792_520251_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_071525509.1|520692_521007_+	DUF3757 domain-containing protein	NA	NA	NA	NA	NA
WP_002210493.1|521133_521598_+	DUF3757 domain-containing protein	NA	NA	NA	NA	NA
WP_002210492.1|521687_522557_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH	NA	NA	NA	NA	NA
WP_002210491.1|522573_522951_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_002210490.1|522964_523783_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_002210489.1|523775_524771_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_002210488.1|524754_526059_-	peptidylprolyl isomerase SurA	NA	NA	NA	NA	NA
WP_002228111.1|526126_528469_-	LPS assembly protein LptD	NA	NA	NA	NA	NA
WP_002210486.1|528653_529487_+	co-chaperone DjlA	NA	NA	NA	NA	NA
WP_002210485.1|529784_530405_-|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	tRNA	NA	NA	NA	NA
WP_002214747.1|531627_532371_-	DUF2285 domain-containing protein	NA	NA	NA	NA	NA
WP_002210482.1|532700_533714_+	ImpA family type VI secretion system protein	NA	NA	NA	NA	NA
WP_002210481.1|533724_534285_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_002210480.1|534293_535796_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_002210479.1|535958_536477_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_002210478.1|536550_536994_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_002210477.1|537026_538871_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_002210476.1|538863_539847_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_002210475.1|539864_542453_+	type VI secretion system ATPase TssH	NA	A0A248SJW6	Salicola_phage	28.7	1.9e-77
WP_002210474.1|542556_544905_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	32.9	2.1e-14
WP_002228110.1|544917_545490_+	DUF2169 domain-containing protein	NA	NA	NA	NA	NA
WP_002228109.1|545514_547137_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_002214739.1|547162_548266_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_002210473.1|548258_548876_+	DUF3540 domain-containing protein	NA	NA	NA	NA	NA
WP_002214737.1|548881_549247_+	DUF4150 domain-containing protein	NA	NA	NA	NA	NA
WP_002210471.1|549239_549731_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_002210470.1|549850_551206_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
>prophage 3
NC_003143	Yersinia pestis CO92, complete genome	4653728	572029	628626	4653728	holin,transposase	Escherichia_phage(33.33%)	53	NA	NA
WP_000255944.1|572029_573052_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002397472.1|573139_573391_+	sugar transporter	NA	NA	NA	NA	NA
WP_002210456.1|573631_574234_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_002210455.1|574248_575679_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_002210454.1|575680_576772_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_002210453.1|576774_578337_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_002213775.1|578483_578942_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002210452.1|579370_579586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002216434.1|580263_581220_+	transcriptional regulator LeuO	NA	NA	NA	NA	NA
WP_002216437.1|581751_583557_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.2	3.5e-38
WP_002228103.1|584016_585744_+	acetolactate synthase 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.4	7.8e-59
WP_002210448.1|585746_586241_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_002213759.1|586439_586898_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002210447.1|587402_588413_+	catabolite repressor/activator	NA	NA	NA	NA	NA
WP_002210446.1|588543_588984_-	L-alanine exporter AlaE	NA	NA	NA	NA	NA
WP_087768171.1|589441_589531_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_002210443.1|590085_590544_+	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_002210442.1|590546_591509_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_002210441.1|591505_591823_+	cell division protein FtsL	NA	NA	NA	NA	NA
WP_002210440.1|591888_593652_+	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA	NA
WP_002210439.1|593638_595126_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_002210438.1|595122_596499_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
WP_002210437.1|596492_597575_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_002210436.1|597577_598894_+	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_002210435.1|598893_600096_+	cell division protein FtsW	NA	NA	NA	NA	NA
WP_002210434.1|600092_601163_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_002216457.1|601300_602776_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_002210432.1|602768_603689_+	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_002228100.1|603690_604518_+	cell division protein FtsQ	NA	NA	NA	NA	NA
WP_002210431.1|604544_605801_+	cell division protein FtsA	NA	NA	NA	NA	NA
WP_002210430.1|605873_607025_+	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_002228285.1|607124_608045_+	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_002210428.1|608211_608736_-	DUF721 domain-containing protein	NA	NA	NA	NA	NA
WP_002210427.1|608764_609298_+	secA regulator SecM	NA	NA	NA	NA	NA
WP_002210426.1|609375_612090_+	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_002210424.1|612384_612771_+	8-oxo-dGTP diphosphatase MutT	NA	A0A0B5CYJ3	Rhizoctonia_fumigata_mycovirus	30.4	8.4e-06
WP_001297096.1|613032_613812_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_000255944.1|613811_614834_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002210421.1|615112_615508_-	DoxX family protein	NA	NA	NA	NA	NA
WP_002210420.1|615811_616096_-	YqjK-like family protein	NA	NA	NA	NA	NA
WP_002210419.1|616092_616488_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_002210418.1|616490_616796_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_002210416.1|616950_617331_-	DUF1090 domain-containing protein	NA	NA	NA	NA	NA
WP_002210415.1|617556_617946_-	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA	NA
WP_002210414.1|617942_618641_-	DedA family protein	NA	NA	NA	NA	NA
WP_002218957.1|618918_619452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210412.1|619700_620495_-	transcriptional regulator ExuR	NA	NA	NA	NA	NA
WP_002353699.1|620757_622059_-	MFS transporter	NA	NA	NA	NA	NA
WP_002210410.1|622806_624216_+	glucuronate isomerase	NA	NA	NA	NA	NA
WP_002210409.1|624414_625866_+	tagaturonate reductase	NA	NA	NA	NA	NA
WP_002210408.1|625876_627367_+	altronate dehydratase	NA	NA	NA	NA	NA
WP_002210407.1|627519_628050_+	YgjV family protein	NA	NA	NA	NA	NA
WP_002213775.1|628167_628626_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
>prophage 4
NC_003143	Yersinia pestis CO92, complete genome	4653728	842802	860311	4653728	transposase	Tupanvirus(50.0%)	7	NA	NA
WP_002211388.1|842802_848622_-	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	31.3	1.3e-41
WP_002214915.1|848634_850323_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	25.0	3.1e-36
WP_002211387.1|850330_856789_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	25.0	8.5e-42
WP_001297096.1|856996_857776_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_000255944.1|857775_858798_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_099156340.1|858879_859176_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_002211384.1|859516_860311_-	thymidylate synthase	NA	R4IFY1	Cronobacter_phage	62.9	8.9e-119
>prophage 5
NC_003143	Yersinia pestis CO92, complete genome	4653728	1014357	1090183	4653728	tRNA,plate,transposase,protease	Escherichia_phage(20.0%)	56	NA	NA
WP_000255944.1|1014357_1015380_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002213759.1|1015563_1016022_-|transposase	IS200/IS605-like element IS1541A family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002209965.1|1016329_1018324_-	transketolase	NA	NA	NA	NA	NA
WP_002209967.1|1018814_1019567_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_071525520.1|1019712_1019823_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_002209968.1|1019856_1020177_-	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA	NA
WP_002209969.1|1020336_1022316_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_002209971.1|1023522_1024677_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	62.1	1.7e-126
WP_002228059.1|1024869_1025382_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_002209973.1|1025479_1026187_+	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_002209975.1|1026438_1027170_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_002209976.1|1027195_1028155_+	glutathione synthase	NA	NA	NA	NA	NA
WP_002209977.1|1028270_1028834_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_002209978.1|1028833_1029256_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_002209979.1|1029435_1030320_+	N-carbamoylputrescine amidase	NA	A7IVZ1	Paramecium_bursaria_Chlorella_virus	51.0	3.1e-80
WP_002209980.1|1030323_1031439_+	agmatine deiminase	NA	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	50.7	3.0e-96
WP_002209981.1|1031547_1032672_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_002215609.1|1032691_1033390_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_002209983.1|1033522_1034344_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_002209984.1|1034631_1035186_+	YggT family protein	NA	NA	NA	NA	NA
WP_002215612.1|1035182_1035473_+	YggU family protein	NA	NA	NA	NA	NA
WP_002215614.1|1035572_1036166_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_002209987.1|1036158_1037289_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_002224905.1|1037478_1046811_-	phage minor structural protein	NA	NA	NA	NA	NA
WP_011566213.1|1047309_1047555_-	DUF2884 family protein	NA	NA	NA	NA	NA
WP_002228656.1|1047512_1048043_-	DUF2884 family protein	NA	NA	NA	NA	NA
WP_002209989.1|1048154_1049081_-	glutaminase B	NA	NA	NA	NA	NA
WP_002209990.1|1049191_1049518_-	YggL family protein	NA	NA	NA	NA	NA
WP_002209991.1|1049517_1050237_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_002228057.1|1050574_1051690_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_002209994.1|1051867_1052140_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_002209995.1|1052322_1053399_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA	NA
WP_002209997.1|1053698_1054799_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002209998.1|1054902_1056936_+	TonB-dependent siderophore receptor	NA	A0A0P0I887	Acinetobacter_phage	26.1	4.5e-05
WP_002209999.1|1057018_1058002_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002210000.1|1058034_1059534_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.7	5.2e-19
WP_002210001.1|1059579_1060539_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002210002.1|1061094_1063257_-	ornithine decarboxylase SpeF	NA	NA	NA	NA	NA
WP_002210005.1|1064585_1065221_-	DUF2345 domain-containing protein	NA	NA	NA	NA	NA
WP_086016632.1|1065828_1066526_-|transposase	IS1 family transposase	transposase	A0A0U2RK18	Escherichia_phage	48.5	1.3e-60
WP_002210008.1|1066621_1067389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210009.1|1067375_1069673_-	M23 family metallopeptidase	NA	NA	NA	NA	NA
WP_002210010.1|1069688_1070324_-	DUF2345 domain-containing protein	NA	NA	NA	NA	NA
WP_002216110.1|1071548_1071743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016590715.1|1071906_1072254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210011.1|1072397_1074620_-	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
WP_002210012.1|1074634_1076983_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	33.3	3.1e-18
WP_002210013.1|1076979_1079628_-	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	29.5	4.8e-92
WP_002210014.1|1080045_1080537_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_002228049.1|1080540_1082277_-	OmpA family protein	NA	NA	NA	NA	NA
WP_002210015.1|1082276_1082963_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_002211664.1|1082959_1084312_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_002215896.1|1084323_1085868_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_002211662.1|1085910_1086411_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_002215900.1|1088686_1089082_-	lipoprotein	NA	NA	NA	NA	NA
WP_002215902.1|1089532_1090183_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 6
NC_003143	Yersinia pestis CO92, complete genome	4653728	1232348	1287490	4653728	transposase,integrase,protease	Escherichia_phage(31.25%)	56	1232280:1232339	1278060:1280016
1232280:1232339	attL	TATTGTCAACGACGGATGAAAAGTGATCCACTTATATCTCCACCAACGGCCCAATATTGA	NA	NA	NA	NA
WP_001297096.1|1232348_1233128_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_000255944.1|1233127_1234150_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002430089.1|1234751_1235063_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	48.1	4.7e-07
WP_002210705.1|1235076_1235391_+	putative addiction module antidote protein	NA	NA	NA	NA	NA
WP_002210707.1|1235739_1236828_-	AAA family ATPase	NA	A0A2H4JFA4	uncultured_Caudovirales_phage	60.4	1.4e-114
WP_002215950.1|1236824_1237784_-	toprim domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	41.0	1.6e-50
WP_002215949.1|1237776_1238319_-	ash family protein	NA	NA	NA	NA	NA
WP_002210709.1|1238318_1238519_-	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	51.7	1.6e-08
WP_002210710.1|1238511_1239399_-|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_002215946.1|1240206_1240434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002215945.1|1240595_1242266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210712.1|1242316_1243405_-	DUF4297 domain-containing protein	NA	NA	NA	NA	NA
WP_002210713.1|1243483_1244683_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	50.2	2.2e-108
WP_002213759.1|1244906_1245365_-|transposase	IS200/IS605-like element IS1541A family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002210714.1|1245999_1246482_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	46.2	3.4e-28
WP_011055694.1|1246540_1247077_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_002210716.1|1247069_1247354_+	RnfH family protein	NA	NA	NA	NA	NA
WP_002210717.1|1247503_1247845_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_002210718.1|1247958_1249620_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_002210719.1|1249706_1250588_-	NAD(+) kinase	NA	NA	NA	NA	NA
WP_002210720.1|1250711_1251290_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_002210721.1|1251397_1252678_-	citrate synthase	NA	NA	NA	NA	NA
WP_002210722.1|1253387_1253777_+	succinate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA	NA
WP_002210723.1|1253770_1254118_+	succinate dehydrogenase membrane anchor subunit	NA	NA	NA	NA	NA
WP_002210724.1|1254118_1255885_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
WP_002210725.1|1255934_1256651_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_002210726.1|1257006_1259814_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_002210727.1|1259843_1261067_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_002210728.1|1261179_1262346_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_002210729.1|1262345_1263218_+	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	34.7	3.6e-20
WP_002210730.1|1263984_1265553_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_002210731.1|1265567_1266707_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_002210732.1|1266719_1266854_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_011191945.1|1266843_1267131_+	cyd operon protein YbgE	NA	NA	NA	NA	NA
WP_002210734.1|1267262_1267664_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_002210735.1|1267663_1268350_+	Tol-Pal system protein TolQ	NA	NA	NA	NA	NA
WP_002210736.1|1268362_1268791_+	colicin uptake protein TolR	NA	NA	NA	NA	NA
WP_002210737.1|1268902_1270069_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_002210738.1|1270188_1271481_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_002210739.1|1271531_1272038_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_002210740.1|1272047_1272857_+	cell division protein CpoB	NA	NA	NA	NA	NA
WP_002210741.1|1273692_1274754_+	quinolinate synthase NadA	NA	NA	NA	NA	NA
WP_002210742.1|1274875_1275601_+	nicotinamide riboside transporter PnuC	NA	A0A2I7SAC7	Vibrio_phage	28.6	8.7e-20
WP_002210743.1|1275715_1276654_-	CDF family zinc transporter ZitB	NA	A0A1V0SED0	Indivirus	42.0	1.2e-10
WP_002210744.1|1277102_1278119_+	3-deoxy-7-phosphoheptulonate synthase AroG	NA	A0A0B6VT43	Edwardsiella_phage	46.8	2.8e-72
WP_001297096.1|1278128_1278908_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_000255944.1|1278907_1279930_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002210745.1|1279988_1280114_+	hypothetical protein	NA	NA	NA	NA	NA
1278060:1280016	attR	TATTGTCAACGACGGATGAAAAGTGATCCACTTATATCTCCACCAACGGCCCAATATTGATCCACCGTTTTACTCAGGATTAGCTTCTGCTATAACCCCGGCCTTTCGTTTCTGTCTGAGTCGATAGCTTTCTCCTTTGATTTGAACGACATGTGAGTGGTGTAAGATACGGTCCAGCATCGCTGAGGTCAGTGCTGCATCACCGGCGAACGTTTGATCCCACTGCCCGAACGGCAGATTGGATGTCAGGATCATTGCGCTCTTTTCGTAACGTTTAGCGATGACCTGGAAGAACAGCTTTGCTTCTTCCTGACTGAACGGCAGATAGCCTATTTCATCAATGATGAGCAGGCGGGGGGCCATTACTCCACGCTGAAGCGTCGTTTTATAACGGCCCTGACGTTGTGCCGTAGATAACTGAAGTAACAGATCTGCTGCTGTTGTGAAGCGAACTTTGATACCTGCACGGACTGCTTCATAGCCCATCGCTATTGCCAGATGGGTTTTCCCCACACCTGATGGCCCCAGTAATACGATATTTTCATTACGTTCTATGAAGCTGAGTGAGCGTAACGACTGGAGTTGCTTCTGCGGTGCTCCGGTGGCGAATGTGAAGTCATACTCTTCGAACGTTTTCACCGCCGGGAAGGCTGCCATTCGGGTATACATCGCCTGTTTACGTTGATGACGTGCCAGTTTTTCTTCATGAAGCAGATGCTCCAGGAAGTCCATATAACTCCATTCCTGGTCTACTGCCTGTTGTGACAGCGCAGGCGCTGCGCTTATAAGGCTTTCCAGTTGCAACTGCCCGGCGAGCGCCATCAGTCGTTGATGTTGCAGTTCCATCATCACGCCACTCCTCTGCAGAATGAGTCGTAGATGGAGAGTGGATGATGCAGGGGGTGTTTGTCGAAGTTCACCAGATTTTCATCAAGATGCACGTCATACTCTTTTTTCTCCGGAGGCAGTGCCAGCATGGACTGCTGCTCTTCGAGCCAGCGATCGCAGGGACGGGCCTGGATTGTTTCATGCTTTCGTTGGTTAGCGACATCGTGCAGCCAGCGCAGACCGTGGCGGTTGGCTGTTTCAACATCGACAGTGATCCCCATCGGGCGCAGGCGAGTCATTAGTGGGATGTAAAAACTGTTACGGGTGTACTGCACCATCCGTTCCACCTTACCTTTAGTCTGTGCCCTGAAGGGGCGACACAGTCGGGGAGAGAAGCCCATCTCCTTGCCGAACTGCCACAGCGAAGGATGGAACCGGTGCTGACCGGTCTGATATGCGTCACGTTGCAGAACCACAGTTTTCATATTGTCATACAACACTTCGCGCGGCACACCACCAAAGAAGCGGAACGCATTACGATGGCAGGTCTCCAGCGTGTCATAACGCATATTGTCAGTGAATTCGATGTACAGCATTCGGCTGTATCCGAGAACAGCAACGAACACGTGAAGCGGTGAGCGACCATTACGCATAGTGCCCCAGTCAACCTGCATCTGTCGTCCGGGTTCAGTTTCGAACCGAACGGCAGGCTCCTGCTCCTGAGGAACCGAGAGAGAACGAATGAATGCCCTGAGAATGGTCATTCCGCCACGATATCCCTGGTCTCTGATCTCGCGAGCGATTACCGTTGCCGGGATTTTGTAAGGATGAGCATCGGCGATGCGTTGACGAATATAATCCCGGTATTCATCCAGGAGTGAAGCAACAGCAGGTCGCGGCGTATATTTTGGCGGCTCAGATTTTGCCTGCAAATAACGTTTAACGGTATTGCGGGAGATCCCCAGTTCTCTGGCAATCGCCCGGCTACTCATTCCCTGCTTGTGCAGGATTTTAATTTCCATAACTGTCTCAAAAGTGACCATAAACTCTCCTGAATCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTTACA	NA	NA	NA	NA
WP_002210746.1|1280295_1281048_-	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA	NA
WP_002210747.1|1281394_1281730_-	phosphate starvation-inducible protein PsiF	NA	NA	NA	NA	NA
WP_002216812.1|1282022_1282919_-	galactose-1-epimerase	NA	NA	NA	NA	NA
WP_002216814.1|1282939_1283092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210748.1|1283085_1284237_-	galactokinase	NA	NA	NA	NA	NA
WP_002210749.1|1284233_1285286_-	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_002210750.1|1285295_1286312_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	44.8	3.0e-79
WP_002210751.1|1286671_1287490_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 7
NC_003143	Yersinia pestis CO92, complete genome	4653728	1310197	1383937	4653728	holin,transposase,protease,tRNA	Helicobacter_phage(15.0%)	59	NA	NA
WP_002213775.1|1310197_1310656_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002220180.1|1310884_1312588_-|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	31.5	9.4e-57
WP_002218281.1|1312610_1314083_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_002218278.1|1314140_1314737_-	transcriptional regulator BetI	NA	NA	NA	NA	NA
WP_002430091.1|1315101_1317123_+|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	28.3	6.0e-18
WP_002214199.1|1317354_1318248_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002214197.1|1318285_1319134_-	DMT family transporter	NA	NA	NA	NA	NA
WP_002214195.1|1319479_1320343_+	xanthosine phosphorylase	NA	Q5YBA4	Grouper_iridovirus	40.7	2.3e-51
WP_002213775.1|1321271_1321730_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002210776.1|1322144_1323074_+	DUF4097 domain-containing protein	NA	NA	NA	NA	NA
WP_002228612.1|1323373_1324312_+|tRNA	tRNA dihydrouridine(16) synthase DusC	tRNA	NA	NA	NA	NA
WP_002210778.1|1324385_1324565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210780.1|1324903_1325839_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_002210781.1|1325959_1327672_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_002210782.1|1327881_1328421_+	class IV adenylate cyclase	NA	NA	NA	NA	NA
WP_002214185.1|1328446_1328788_-	HNH nuclease family protein	NA	NA	NA	NA	NA
WP_002210785.1|1329100_1330204_+	suppressor of fused domain protein	NA	NA	NA	NA	NA
WP_002210786.1|1330388_1330637_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_002210787.1|1330844_1331681_+	phosphonate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.1	6.1e-17
WP_002210788.1|1331717_1332647_+	phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002210789.1|1332749_1333610_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_002210790.1|1333612_1334494_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_002210791.1|1334739_1335213_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	50.7	1.7e-37
WP_002210792.1|1335647_1336916_+	urea ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002210793.1|1337039_1338641_+	urea ABC transporter permease subunit UrtB	NA	NA	NA	NA	NA
WP_002210794.1|1338640_1339717_+	urea ABC transporter permease subunit UrtC	NA	NA	NA	NA	NA
WP_002210795.1|1339713_1340550_+	urea ABC transporter ATP-binding protein UrtD	NA	A0A285PWH2	Cedratvirus	28.2	4.2e-10
WP_002223523.1|1340643_1341342_+	urea ABC transporter ATP-binding subunit UrtE	NA	A0A2H4PQG7	Staphylococcus_phage	25.6	6.4e-12
WP_002210797.1|1341456_1342314_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA	NA
WP_002210798.1|1342337_1343753_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_002210799.1|1343907_1344762_-	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA	NA
WP_002214183.1|1345497_1345965_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_079993142.1|1345968_1346430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002210801.1|1346690_1347845_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002210802.1|1347841_1348780_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.5	6.4e-23
WP_002353933.1|1348914_1349613_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002210804.1|1350090_1351425_+	arginine/agmatine antiporter	NA	NA	NA	NA	NA
WP_002210805.1|1351494_1353801_+	arginine decarboxylase	NA	NA	NA	NA	NA
WP_002210806.1|1353918_1354122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210807.1|1354246_1355137_-	drug/metabolite exporter YedA	NA	NA	NA	NA	NA
WP_002210809.1|1355548_1356664_-	porin OmpF2	NA	Q1MVN1	Enterobacteria_phage	54.5	2.1e-110
WP_002210810.1|1356933_1359114_+	ATP-dependent DNA helicase DinG	NA	A0A127AW80	Bacillus_phage	26.3	1.1e-44
WP_002210811.1|1359181_1360621_-	catalase	NA	A0A2K9L0T1	Tupanvirus	38.8	4.9e-99
WP_002210812.1|1360981_1361524_+	YfaZ family protein	NA	NA	NA	NA	NA
WP_002221775.1|1361780_1362989_-	tyrosine transporter TyrP	NA	NA	NA	NA	NA
WP_002210814.1|1363607_1364801_+	nicotinamide mononucleotide deamidase-related protein YfaY	NA	NA	NA	NA	NA
WP_002210815.1|1364858_1365368_-|protease	serine protease inhibitor ecotin	protease	NA	NA	NA	NA
WP_002210816.1|1365402_1365660_-	2Fe-2S ferredoxin-like protein	NA	G9IAA2	Pseudomonas_phage	54.9	4.0e-20
WP_002210817.1|1365663_1366794_-	ribonucleotide-diphosphate reductase subunit beta	NA	G9IAA3	Pseudomonas_phage	78.6	7.6e-172
WP_002210818.1|1366956_1369245_-	ribonucleoside-diphosphate reductase subunit alpha	NA	I3UMG3	Colwellia_phage	64.9	1.1e-286
WP_002210820.1|1369738_1370467_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_002210821.1|1370728_1373404_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	34.4	4.0e-102
WP_002228028.1|1373591_1376465_+	two-component system sensor histidine kinase RcsC	NA	A0A1V0SGX0	Hokovirus	28.3	3.8e-42
WP_002210824.1|1376532_1377186_-	transcriptional regulator RcsB	NA	NA	NA	NA	NA
WP_002216094.1|1377188_1377761_-	Hpt domain-containing protein	NA	NA	NA	NA	NA
WP_002216093.1|1377928_1379881_-	phosphotransferase RcsD	NA	NA	NA	NA	NA
WP_002210825.1|1379904_1381059_-	MFS transporter	NA	NA	NA	NA	NA
WP_002210826.1|1382161_1383277_+	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	57.6	9.6e-111
WP_002213775.1|1383478_1383937_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
>prophage 8
NC_003143	Yersinia pestis CO92, complete genome	4653728	1399962	1420647	4653728	plate,transposase,tail,coat	Pseudomonas_phage(20.0%)	22	NA	NA
WP_002208856.1|1399962_1401471_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	B5TK67	Pseudomonas_phage	44.2	2.4e-104
WP_002208855.1|1401492_1401861_+|tail	phage tail tube protein	tail	NA	NA	NA	NA
WP_002208854.1|1401862_1402162_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_002208853.1|1402282_1403776_+|coat	coat protein	coat	NA	NA	NA	NA
WP_002208852.1|1404042_1405449_+	DNA circularization protein	NA	Q8SBG8	Shigella_phage	33.7	2.1e-17
WP_002208850.1|1405445_1406501_+|tail	tail protein	tail	M1PVV2	Vibrio_phage	27.2	1.3e-37
WP_002215460.1|1406516_1407113_+|plate	phage baseplate assembly protein	plate	NA	NA	NA	NA
WP_002208848.1|1407109_1407565_+	phage GP46 family protein	NA	A0A0C4UR04	Shigella_phage	43.8	4.3e-17
WP_002208847.1|1407568_1408705_+|plate	baseplate J/gp47 family protein	plate	B5TK75	Pseudomonas_phage	30.5	4.5e-31
WP_002215458.1|1408701_1408962_+	DUF2313 domain-containing protein	NA	NA	NA	NA	NA
WP_002208846.1|1408958_1409306_+	DUF2313 domain-containing protein	NA	A0A2P9JZK7	Alteromonadaceae_phage	41.3	6.4e-21
WP_002208845.1|1409402_1410182_+|tail	tail fiber protein	tail	Q9MCR6	Enterobacteria_phage	52.4	7.1e-52
WP_002208843.1|1410479_1411220_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002208842.1|1411510_1412947_+	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
WP_002208841.1|1413072_1413435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002208840.1|1414134_1414623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002208839.1|1414635_1415784_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_002230704.1|1416140_1416524_-	DUF927 domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	66.7	7.8e-36
WP_002208837.1|1416754_1418551_-	DUF3413 domain-containing protein	NA	NA	NA	NA	NA
WP_002208836.1|1418578_1418806_-	YejL family protein	NA	NA	NA	NA	NA
WP_002208835.1|1418983_1419988_+	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	47.7	3.1e-84
WP_002213775.1|1420188_1420647_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
>prophage 9
NC_003143	Yersinia pestis CO92, complete genome	4653728	1532160	1541797	4653728	transposase,protease,tRNA	Planktothrix_phage(16.67%)	8	NA	NA
WP_002211351.1|1532160_1534110_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	37.7	8.8e-35
WP_002211350.1|1534390_1534654_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	59.7	3.6e-16
WP_002211349.1|1535014_1535335_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	42.7	8.2e-15
WP_002211348.1|1535360_1537637_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.7	7.4e-166
WP_002213759.1|1537929_1538388_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002211347.1|1538759_1538978_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_002211346.1|1539143_1539854_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_002211344.1|1540072_1541797_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	31.8	3.3e-17
>prophage 10
NC_003143	Yersinia pestis CO92, complete genome	4653728	1585712	1659851	4653728	plate,transposase,protease,tRNA	Helicobacter_phage(23.08%)	60	NA	NA
WP_002211311.1|1585712_1586498_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
WP_002211310.1|1586494_1587817_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_002211309.1|1587797_1588526_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_002211308.1|1588522_1592980_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_002213759.1|1593195_1593654_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002217987.1|1593937_1595794_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_002211305.1|1596017_1596566_+	YcbK family protein	NA	A0A0K1LLY2	Rhodobacter_phage	34.7	7.8e-05
WP_002211304.1|1596626_1597274_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	32.3	2.2e-22
WP_002430096.1|1597427_1597544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002211303.1|1597697_1598888_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_002354007.1|1599144_1600224_-	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	56.5	3.2e-111
WP_002211301.1|1600524_1601925_-|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.2	6.5e-80
WP_002228013.1|1602423_1603629_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_002220013.1|1604344_1606960_+	aminopeptidase N	NA	NA	NA	NA	NA
WP_002211296.1|1607577_1608588_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_002211295.1|1608770_1609322_+	cell division protein ZapC	NA	NA	NA	NA	NA
WP_002211294.1|1609347_1610460_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_002211293.1|1610559_1612680_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_002211292.1|1612685_1614599_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	28.9	1.5e-47
WP_002211291.1|1614727_1616014_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_002211290.1|1616000_1617653_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_002211289.1|1617649_1618228_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_002228015.1|1618497_1618665_+	ribosome modulation factor	NA	NA	NA	NA	NA
WP_002213775.1|1618862_1619321_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_001297096.1|1620481_1621261_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_000255944.1|1621260_1622283_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002211286.1|1622916_1623105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002220006.1|1623370_1623889_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_002224683.1|1623957_1625709_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_002226586.1|1625919_1626375_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_002213775.1|1626543_1627002_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002213066.1|1627191_1628253_-	porin OmpA	NA	NA	NA	NA	NA
WP_002213065.1|1628610_1629117_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_002213064.1|1629345_1629981_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_002213063.1|1630082_1632221_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_002213062.1|1632250_1632697_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_002213061.1|1632890_1634876_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	28.4	5.3e-19
WP_002213060.1|1634936_1635401_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_002213058.1|1635579_1636260_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_002213056.1|1636575_1636992_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_002213054.1|1637100_1637418_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_002213052.1|1637478_1638669_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	W6LLI2	Streptococcus_phage	28.1	2.1e-26
WP_002213049.1|1638762_1639041_+	acylphosphatase	NA	NA	NA	NA	NA
WP_002213046.1|1639092_1639422_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_002213039.1|1643067_1645485_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002213038.1|1645638_1646385_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	31.4	3.3e-14
WP_002213036.1|1647115_1647334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002213034.1|1647597_1648122_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
WP_002213032.1|1648111_1649395_+	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA	NA
WP_002213030.1|1649396_1650134_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002213028.1|1650149_1651388_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_002213026.1|1651380_1652100_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_002213025.1|1652101_1652854_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_002213024.1|1652856_1653645_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002228570.1|1653731_1654172_+	lipocalin-like domain-containing protein	NA	NA	NA	NA	NA
WP_002213017.1|1654209_1654458_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_002213016.1|1654556_1655405_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_002213014.1|1656393_1656894_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_002214707.1|1656936_1658487_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_002213011.1|1658498_1659851_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
>prophage 11
NC_003143	Yersinia pestis CO92, complete genome	4653728	1684715	1734156	4653728	plate,lysis,transposase,tRNA	Escherichia_phage(16.67%)	41	NA	NA
WP_002211940.1|1684715_1686479_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_002211941.1|1686442_1687528_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_002214552.1|1687502_1688084_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_002211943.1|1688083_1688536_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_002211944.1|1688560_1689928_+	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_002211945.1|1690139_1690763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002227996.1|1691445_1693041_+	ABC-F family ATPase	NA	A0A2K9L0W2	Tupanvirus	28.5	6.1e-58
WP_002211947.1|1693268_1693922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002209743.1|1693965_1695174_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002211948.1|1695309_1696080_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
WP_002211949.1|1696081_1697356_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_002211950.1|1697890_1699201_-	darobactin maturation radical SAM/SPASM protein DarE	NA	NA	NA	NA	NA
WP_002211951.1|1699210_1699879_-	darobactin export ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.0	1.4e-35
WP_002211952.1|1699880_1701143_-	darobactin export ABC transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_002215886.1|1701144_1703505_-	darobactin export ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002227980.1|1703588_1703801_-	peptide antibiotic darobactin C	NA	NA	NA	NA	NA
WP_002211956.1|1704057_1704900_-	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
WP_002211957.1|1704920_1706060_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	29.9	5.2e-35
WP_002211958.1|1706333_1707203_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002211959.1|1707338_1708490_+	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA	NA
WP_002211960.1|1708673_1709336_+	GTP cyclohydrolase I FolE	NA	R9TJA5	Vibrio_phage	53.5	5.8e-55
WP_002211961.1|1709390_1710557_+	DUF418 family protein	NA	NA	NA	NA	NA
WP_002215885.1|1711304_1712312_+	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA	NA
WP_002211964.1|1712541_1714062_+	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.9	2.6e-10
WP_002211965.1|1714082_1715093_+	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA	NA
WP_002211966.1|1715537_1716275_-	outer membrane permeability protein SanA	NA	NA	NA	NA	NA
WP_002211968.1|1716555_1718253_-	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
WP_002211969.1|1718608_1719493_-	cytidine deaminase	NA	NA	NA	NA	NA
WP_002211970.1|1719818_1720514_-|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
WP_002211971.1|1720510_1720918_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_002211973.1|1721159_1722341_-	MFS transporter	NA	NA	NA	NA	NA
WP_002211974.1|1722673_1723927_-	LVIVD repeat-containing protein	NA	NA	NA	NA	NA
WP_002211975.1|1723944_1725021_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002228565.1|1725718_1726381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001297096.1|1726645_1727425_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_000255944.1|1727424_1728447_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002213775.1|1728557_1729016_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002211870.1|1729179_1731207_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.1	8.0e-55
WP_002211871.1|1731471_1732584_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_002211872.1|1732828_1733470_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	37.9	1.0e-35
WP_002211873.1|1733574_1734156_+	dCTP deaminase	NA	I4AZP2	Saccharomonospora_phage	43.2	2.5e-33
>prophage 12
NC_003143	Yersinia pestis CO92, complete genome	4653728	1777850	1833747	4653728	transposase	uncultured_virus(27.27%)	48	NA	NA
WP_002209743.1|1777850_1779059_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002216388.1|1779021_1782174_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_002211911.1|1783198_1784503_+	MFS transporter	NA	NA	NA	NA	NA
WP_002211912.1|1784511_1784934_-	thiol-disulfide oxidoreductase DCC family protein	NA	NA	NA	NA	NA
WP_002216393.1|1785361_1786102_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002211916.1|1786149_1786992_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_002211917.1|1787023_1788301_+	L-fuconate dehydratase	NA	NA	NA	NA	NA
WP_002211919.1|1788597_1789743_+	FMN-dependent L-lactate dehydrogenase LldD	NA	NA	NA	NA	NA
WP_002211920.1|1789947_1791315_-	argininosuccinate synthase	NA	A0A140XAJ5	Dickeya_phage	93.7	7.0e-63
WP_002224723.1|1791608_1793039_+	EmmdR/YeeO family multidrug/toxin efflux MATE transporter	NA	NA	NA	NA	NA
WP_002211922.1|1793066_1794407_-	MFS transporter	NA	NA	NA	NA	NA
WP_002211923.1|1794442_1795324_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_002217591.1|1795900_1796596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211926.1|1796685_1797225_+	DUF2058 domain-containing protein	NA	NA	NA	NA	NA
WP_002213125.1|1798091_1798721_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002213124.1|1798978_1800271_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_002213122.1|1800290_1800797_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_002213121.1|1800920_1801913_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002213120.1|1802435_1803176_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA	NA
WP_002216586.1|1803381_1803546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002213113.1|1803562_1805689_-	alpha-galactosidase	NA	NA	NA	NA	NA
WP_042468818.1|1805766_1807044_-	MFS transporter	NA	NA	NA	NA	NA
WP_002209743.1|1807068_1808277_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002217041.1|1808239_1808536_-	biofilm formation regulator BssS	NA	NA	NA	NA	NA
WP_002213110.1|1809041_1809287_-	DNA damage-inducible protein I	NA	K7PM44	Enterobacteria_phage	51.3	2.6e-13
WP_002213109.1|1809599_1810646_-	dihydroorotase	NA	NA	NA	NA	NA
WP_002213107.1|1810880_1811168_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_002209743.1|1811444_1812653_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002354074.1|1812748_1816405_-	ribonuclease E	NA	NA	NA	NA	NA
WP_002210927.1|1816988_1817951_+	23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA	NA	NA	NA	NA
WP_002213759.1|1818170_1818629_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002210928.1|1818783_1819380_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_002210930.1|1819521_1820046_+	23S rRNA accumulation protein YceD	NA	NA	NA	NA	NA
WP_002210931.1|1820058_1820226_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_002210932.1|1820259_1821294_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_002210933.1|1821300_1822251_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_002210934.1|1822288_1823218_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_002210935.1|1823231_1823966_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	33.1	7.7e-16
WP_002220787.1|1824119_1824356_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	45.6	7.7e-10
WP_002213079.1|1824450_1825692_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_002213775.1|1825891_1826350_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002213080.1|1826765_1827572_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_002217396.1|1827860_1828886_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_002213082.1|1828875_1829514_+	dTMP kinase	NA	Q2Z0N0	Pseudomonas_phage	36.1	4.6e-25
WP_002213083.1|1829513_1830536_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_002213084.1|1830550_1831360_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_002213085.1|1831665_1833099_+	PTS glucose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_002213759.1|1833288_1833747_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
>prophage 13
NC_003143	Yersinia pestis CO92, complete genome	4653728	1929717	1947705	4653728	transposase,protease,coat	Escherichia_phage(50.0%)	15	NA	NA
WP_000255944.1|1929717_1930740_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002215943.1|1931146_1931536_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_002210859.1|1931645_1931885_-	YebV family protein	NA	NA	NA	NA	NA
WP_002210858.1|1932092_1933082_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_002210857.1|1933287_1935735_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_002210856.1|1935922_1936675_-	molecular chaperone	NA	NA	NA	NA	NA
WP_002216611.1|1936705_1937263_-|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
WP_002216613.1|1937283_1937814_-|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
WP_002210852.1|1937819_1938374_-|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
WP_010981402.1|1938852_1941504_-	PqiB family protein	NA	NA	NA	NA	NA
WP_002367629.1|1941472_1942720_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA	NA
WP_002210850.1|1942951_1943449_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_002210849.1|1943544_1944258_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_002210848.1|1944277_1946350_+	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	34.8	4.0e-86
WP_002210847.1|1946823_1947705_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 14
NC_003143	Yersinia pestis CO92, complete genome	4653728	2352408	2452065	4653728	lysis,tail,holin,tRNA,transposase,integrase	Escherichia_phage(14.81%)	103	2362960:2362990	2404684:2404714
WP_002211184.1|2352408_2353107_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_002211183.1|2353243_2353849_+	Slp family lipoprotein	NA	NA	NA	NA	NA
WP_087768167.1|2353849_2353957_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_002211182.1|2354491_2356180_+	long-chain-fatty-acid--CoA ligase FadD	NA	A0A2H4PQM9	Staphylococcus_phage	28.9	1.8e-31
WP_002211181.1|2356339_2357461_+	ribonuclease D	NA	NA	NA	NA	NA
WP_002211180.1|2357697_2357967_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_002211179.1|2357970_2358783_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_002220631.1|2358807_2359494_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_002211743.1|2360214_2360487_+	YcgL domain-containing protein	NA	NA	NA	NA	NA
WP_002215627.1|2360627_2361713_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_002211740.1|2361783_2362440_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_002211739.1|2362542_2362989_+	YcgN family cysteine cluster protein	NA	NA	NA	NA	NA
2362960:2362990	attL	ATATTGAATAAGCCGAGTTGGGCTAAATAAC	NA	NA	NA	NA
WP_002211738.1|2363015_2364254_-|integrase	site-specific integrase	integrase	Q20GI2	Phage_258-320	53.3	2.3e-121
WP_000255944.1|2364323_2365346_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_001297096.1|2365345_2366125_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_002215632.1|2366292_2366553_-	excisionase family protein	NA	Q859D3	Escherichia_coli_phage	42.9	1.7e-10
WP_002211736.1|2367577_2368024_+	recombination protein NinB	NA	A0A2H4J8D9	uncultured_Caudovirales_phage	62.5	3.9e-47
WP_002211735.1|2368097_2368703_+	recombination protein NinG	NA	A0A1P8DTE0	Proteus_phage	56.9	2.8e-56
WP_002215636.1|2368703_2369093_+	antitermination protein	NA	A0A1W6JNX1	Morganella_phage	68.8	1.4e-45
WP_002215638.1|2369096_2369315_+	ash family protein	NA	NA	NA	NA	NA
WP_002211732.1|2369363_2369927_+	Bro-N domain-containing protein	NA	B6SD63	Bacteriophage	58.0	9.4e-30
WP_002211731.1|2370350_2370560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002215644.1|2370556_2370832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002430108.1|2371077_2371275_+|holin	phage holin family protein	holin	B6SD15	Bacteriophage	64.4	4.9e-18
WP_002211730.1|2371305_2371818_+	lysozyme	NA	I6PBN2	Cronobacter_phage	61.6	9.7e-50
WP_002211729.1|2371802_2372261_+|lysis	lysis protein	lysis	A0A2H4JHL8	uncultured_Caudovirales_phage	45.3	4.9e-21
WP_002211727.1|2372806_2373520_+	phage antirepressor KilAC domain-containing protein	NA	Q5MBW0	Stx1-converting_phage	60.2	7.6e-69
WP_002211725.1|2373976_2374612_+	hypothetical protein	NA	I6S676	Salmonella_phage	71.4	7.2e-87
WP_002211724.1|2374642_2375092_+	DUF2280 domain-containing protein	NA	I6S1P9	Salmonella_phage	72.9	1.0e-47
WP_002211723.1|2375095_2375680_+	hypothetical protein	NA	A0A0R6PHH0	Moraxella_phage	70.7	4.8e-69
WP_002209743.1|2375727_2376936_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002211722.1|2376940_2377915_+	hypothetical protein	NA	A0A1W6JNY3	Morganella_phage	81.1	2.3e-153
WP_002228445.1|2377914_2378643_+	hypothetical protein	NA	A0A1B0VMH0	Pseudomonas_phage	51.4	4.6e-61
WP_002228446.1|2378661_2379303_+	DUF4055 domain-containing protein	NA	A0A1B0VMH0	Pseudomonas_phage	54.1	3.8e-59
WP_002211721.1|2379303_2380416_+	hypothetical protein	NA	I6PD76	Cronobacter_phage	58.2	6.0e-121
WP_002211720.1|2380537_2381311_+	hypothetical protein	NA	A0A1B0VMG1	Pseudomonas_phage	62.3	2.8e-69
WP_002211719.1|2381324_2382530_+	Ig-like domain-containing protein	NA	A0A1B0VMF8	Pseudomonas_phage	79.2	1.8e-142
WP_002211718.1|2382577_2383060_+	hypothetical protein	NA	G8C7P9	Escherichia_phage	46.1	6.4e-27
WP_002211717.1|2383056_2383311_+	hypothetical protein	NA	J9Q7U0	Salmonella_phage	53.1	2.2e-18
WP_002211716.1|2383312_2383663_+	hypothetical protein	NA	I6PD77	Cronobacter_phage	56.0	6.9e-31
WP_002211715.1|2383664_2384249_+	hypothetical protein	NA	G8C7Q1	Escherichia_phage	52.1	3.6e-48
WP_002211714.1|2384245_2384653_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_002211713.1|2384718_2385639_+	Ig-like domain-containing protein	NA	I6PBN6	Cronobacter_phage	49.1	4.4e-61
WP_002211712.1|2385651_2385963_+	hypothetical protein	NA	I6PDG2	Cronobacter_phage	58.3	1.4e-30
WP_071525538.1|2386010_2386271_+	DUF1799 domain-containing protein	NA	A0A0S2SY90	Pseudomonas_phage	50.0	3.7e-13
WP_002211711.1|2386271_2389775_+|tail	phage tail tape measure protein	tail	K7PMB9	Enterobacterial_phage	33.2	5.2e-118
WP_002211710.1|2389777_2390119_+|tail	phage tail protein	tail	Q6UAW6	Klebsiella_phage	50.0	1.7e-21
WP_002213759.1|2390423_2390882_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002211709.1|2391002_2391755_+|tail	phage minor tail protein L	tail	A0A1W6JNX9	Morganella_phage	67.7	9.4e-102
WP_002211708.1|2391757_2392468_+	C40 family peptidase	NA	K7P6F5	Enterobacteria_phage	76.8	1.3e-108
WP_002211707.1|2392728_2393361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211706.1|2393439_2393871_-	Arc family DNA-binding protein	NA	G9L6D6	Escherichia_phage	58.4	2.5e-30
WP_002211705.1|2393994_2394162_+	hypothetical protein	NA	G9L6D7	Escherichia_phage	61.8	5.2e-13
WP_002211704.1|2394235_2395243_+	Bro-N domain-containing protein	NA	A0A2H4J0P1	uncultured_Caudovirales_phage	33.0	4.1e-36
WP_002214482.1|2395341_2395893_+	zinc ribbon domain-containing protein	NA	S4TR42	Salmonella_phage	58.0	9.5e-27
WP_002211701.1|2396035_2396251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211700.1|2396306_2396927_+|tail	tail assembly protein	tail	K7PGY0	Enterobacteria_phage	57.0	3.2e-55
WP_002211699.1|2396968_2397133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002359202.1|2397101_2397323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002211698.1|2397498_2400702_+	host specificity protein J	NA	F1C571	Cronobacter_phage	60.5	0.0e+00
WP_002211697.1|2400701_2401700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211696.1|2401716_2402634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211695.1|2402644_2403064_+|tail	tail fiber assembly protein	tail	B6SCW7	Bacteriophage	42.0	5.7e-08
WP_002209743.1|2403284_2404493_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002214492.1|2404797_2405970_-	MFS transporter	NA	NA	NA	NA	NA
2404684:2404714	attR	ATATTGAATAAGCCGAGTTGGGCTAAATAAC	NA	NA	NA	NA
WP_002211693.1|2405973_2407173_-	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.6	2.4e-38
WP_002211692.1|2407189_2407930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002214494.1|2409021_2409378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002227934.1|2409794_2410325_-	disulfide bond formation protein DsbB	NA	NA	NA	NA	NA
WP_002211689.1|2410560_2412135_-	sodium/proton antiporter NhaB	NA	NA	NA	NA	NA
WP_002211688.1|2412378_2413098_+	fatty acid metabolism transcriptional regulator FadR	NA	NA	NA	NA	NA
WP_002211687.1|2413315_2414851_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_002211686.1|2415315_2416620_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_002216508.1|2416635_2417838_-	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	29.1	7.6e-29
WP_002211685.1|2418102_2418972_-	pirin family protein	NA	NA	NA	NA	NA
WP_002211684.1|2419169_2420075_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002211683.1|2420109_2421228_-	DMT family transporter	NA	NA	NA	NA	NA
WP_002216501.1|2421335_2422610_-	YeaH/YhbH family protein	NA	A0A140HLI1	Bacillus_phage	37.1	1.5e-11
WP_002211681.1|2422759_2424694_-	protein kinase YeaG	NA	NA	NA	NA	NA
WP_002430110.1|2425137_2425887_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_002211679.1|2425959_2426835_-	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA	NA
WP_002224141.1|2427148_2428144_-	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_002211677.1|2428491_2428905_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_002217933.1|2428975_2429248_+	YeaC family protein	NA	NA	NA	NA	NA
WP_002211676.1|2429381_2430029_-	bifunctional nicotinamidase/pyrazinamidase	NA	A0A2K9L6K4	Tupanvirus	33.0	1.8e-21
WP_002211675.1|2430043_2431060_-	asparaginase	NA	NA	NA	NA	NA
WP_002211674.1|2431176_2433027_-	signal peptide peptidase SppA	NA	NA	NA	NA	NA
WP_002211673.1|2433189_2433741_+	NAD(P)H nitroreductase	NA	NA	NA	NA	NA
WP_002211671.1|2433965_2435012_+	selenide, water dikinase SelD	NA	NA	NA	NA	NA
WP_002211670.1|2435073_2436999_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	30.4	4.2e-37
WP_002211669.1|2436995_2437286_+	DUF1496 domain-containing protein	NA	NA	NA	NA	NA
WP_002211668.1|2437298_2437685_-	pyrimidine (deoxy)nucleoside triphosphate diphosphatase	NA	NA	NA	NA	NA
WP_002211667.1|2437782_2438589_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_002211665.1|2439398_2440259_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002209743.1|2441130_2442339_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002210667.1|2442301_2443171_-	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	37.3	5.5e-13
WP_002210666.1|2443254_2443719_-	YchJ family protein	NA	NA	NA	NA	NA
WP_002210665.1|2445052_2446069_+	two-component system response regulator RssB	NA	NA	NA	NA	NA
WP_002210664.1|2446375_2447722_+	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	38.3	1.9e-81
WP_002210661.1|2448156_2448555_-	DNA-binding transcriptional regulator H-NS	NA	NA	NA	NA	NA
WP_002210659.1|2449304_2449895_+	thymidine kinase	NA	A0A1Z1LYD5	Serratia_phage	55.8	1.5e-54
WP_001297096.1|2450263_2451043_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_000255944.1|2451042_2452065_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
>prophage 15
NC_003143	Yersinia pestis CO92, complete genome	4653728	3098414	3153665	4653728	transposase,integrase,tRNA	Helicobacter_phage(16.67%)	56	3098307:3098366	3153099:3153810
3098307:3098366	attL	AATAAATATCCTCCGGCATAGCCGGAGGTTTTTCATATGCGCCTATAAGGCTCTGTTACC	NA	NA	NA	NA
WP_002213775.1|3098414_3098873_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002209726.1|3099151_3100162_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_002209727.1|3100161_3101043_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_002209728.1|3101199_3101862_+	DedA family protein	NA	NA	NA	NA	NA
WP_002209729.1|3102092_3103007_+	acetyl-CoA carboxylase, carboxyltransferase subunit beta	NA	NA	NA	NA	NA
WP_002209730.1|3103255_3104560_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_002209731.1|3104679_3105402_+	cell division protein DedD	NA	NA	NA	NA	NA
WP_002209732.1|3105713_3106223_+	colicin V production protein	NA	NA	NA	NA	NA
WP_002209733.1|3106235_3107753_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	42.4	5.0e-86
WP_002209734.1|3107999_3108572_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_002216029.1|3109096_3109879_+	histidine ABC transporter substrate-binding protein HisJ	NA	NA	NA	NA	NA
WP_002209736.1|3109981_3110668_+	histidine ABC transporter permease HisQ	NA	NA	NA	NA	NA
WP_002209737.1|3110664_3111381_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002209738.1|3111394_3112192_+	histidine ABC transporter ATP-binding protein HisP	NA	G9BWD6	Planktothrix_phage	33.5	7.1e-23
WP_002209739.1|3112315_3113224_-	TIGR01777 family protein	NA	NA	NA	NA	NA
WP_002209740.1|3113577_3114270_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_002227850.1|3114470_3115046_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_002209742.1|3115267_3115816_+	NUDIX hydrolase YfcD	NA	NA	NA	NA	NA
WP_002222248.1|3115932_3117189_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_002209743.1|3117328_3118537_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_071525544.1|3118600_3120103_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_002209745.1|3120315_3120561_-	helix-turn-helix domain-containing protein	NA	A0A2I7S995	Vibrio_phage	64.2	7.2e-19
WP_002209746.1|3122082_3122484_+	DUF1240 domain-containing protein	NA	NA	NA	NA	NA
WP_002209748.1|3122716_3123118_+	DUF1240 domain-containing protein	NA	NA	NA	NA	NA
WP_002209749.1|3123129_3123702_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_002227852.1|3123725_3123977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002209751.1|3124015_3124255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002209752.1|3125063_3126980_+	autotransporter adhesin YapC	NA	NA	NA	NA	NA
WP_002224869.1|3127103_3127226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002209753.1|3127514_3128096_+	AbiEi antitoxin N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_002209743.1|3128497_3129706_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
WP_002209756.1|3130157_3132365_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_002209757.1|3132357_3132888_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_002209758.1|3133046_3135428_+	glycoside hydrolase family 3 C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_002209759.1|3135506_3137135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002209762.1|3137607_3138459_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.1	1.2e-49
WP_002209763.1|3138484_3139474_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_002209764.1|3139528_3140422_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000255944.1|3140515_3141538_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_001297096.1|3141537_3142317_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_002215253.1|3142683_3142989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002209765.1|3143085_3143487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002209766.1|3143468_3144788_-	phosphatase PAP2/dual specificity phosphatase family protein	NA	NA	NA	NA	NA
WP_002215255.1|3144780_3146544_-	bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_002209768.1|3146540_3147173_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_002209769.1|3147182_3148112_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_002209770.1|3148104_3148707_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA	NA
WP_002354559.1|3149106_3149313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079866998.1|3149524_3149803_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A192Y6Q1	Salmonella_phage	73.5	4.2e-31
WP_002215266.1|3149885_3150224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002228356.1|3150359_3150857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002215268.1|3150970_3151171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002215270.1|3151429_3151612_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_002209774.1|3151966_3152833_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	34.1	2.2e-30
WP_002209775.1|3152847_3153060_+	ribosome-associated protein YbcJ	NA	NA	NA	NA	NA
WP_002213775.1|3153206_3153665_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
3153099:3153810	attR	AATAAATATCCTCCGGCATAGCCGGAGGTTTTTCATATGCGCCTATAAGGCTCTGTTACCAGCCGCGCCCTAACAGGCGCATCGCGATCTGACATTTGCATCTATGGATTACTTACGGCCCGTAAACGGGCTACCGGGATACGGGATCGAGAGTTGCTCACCCATTTTATCCTCTTCCAATTGGTGCTTTATGTATTCTTGTATCCTGGCCGTGTTTTTCCCTACCGTATCAACGTAATACCCTCGACACCAAAACTCCCTGTTACGGTATTTGAACTTCAAATCGCCAAACTGCTCATAAAGCATCAGACTGCTCTTTCCCTTCAGGTACCCCATAAATCCCGAGACACTCATCTTGGGCGGGATCTCCAGAAGCATATGGATGTGATCCACACAGCATTCTGCTTCCAGGATATTCACGTTTTTCCATTCGCACAGTTTTCTTAAAATACTGCCAATCGCTCTGCGTTTTTCCCTGTAGAACACCTGCCTTCGGTACTTCGGCGCAAAAACTATATGATATTTACAGTTCCATCGGGTGTGCGCTAAGCTCTTTTCATCCCTCATTGGGACCCCCTTTTGATTTCTTGTTGAACATTTGCAGTTGCCAGACCGCAAACTGTTTTAACAAATCAAAAGGGGTTTTTATAACTGACCCAAAGCTGAAAGCTTTACTGAACCCCCAGCCTAGCTGGGGGTTTTCTGGGCACAA	NA	NA	NA	NA
>prophage 16
NC_003143	Yersinia pestis CO92, complete genome	4653728	3218017	3285781	4653728	plate,transposase,tRNA	Helicobacter_phage(14.29%)	58	NA	NA
WP_002209820.1|3218017_3219214_-|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	tRNA	NA	NA	NA	NA
WP_002209821.1|3219475_3219904_-	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	39.4	1.1e-17
WP_002215515.1|3220230_3222651_-	peptidase inhibitor family I36 protein	NA	NA	NA	NA	NA
WP_146737630.1|3223340_3227729_+	autotransporter YapA	NA	NA	NA	NA	NA
WP_002215508.1|3228286_3231445_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_002215505.1|3231410_3231731_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_071525548.1|3231809_3231935_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_002209828.1|3232068_3233022_-	enhanced serine sensitivity protein SseB	NA	NA	NA	NA	NA
WP_002209829.1|3233100_3234399_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	39.0	9.7e-38
WP_002209830.1|3234538_3234739_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_002209831.1|3234768_3235104_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_002209832.1|3235106_3237059_-	Fe-S protein assembly chaperone HscA	NA	F2Y2E1	Organic_Lake_phycodnavirus	37.8	1.8e-96
WP_002209833.1|3237301_3237826_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_002209834.1|3237936_3238260_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	47.7	7.8e-21
WP_002209835.1|3238529_3238916_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	77.3	5.4e-53
WP_002209836.1|3238946_3240176_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	33.1	8.6e-36
WP_002222202.1|3240229_3240724_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_002217034.1|3240879_3241653_-|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_002213305.1|3241771_3242575_+	inositol-1-monophosphatase	NA	NA	NA	NA	NA
WP_002213775.1|3242778_3243237_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002217028.1|3243383_3244406_-	nickel/cobalt transporter	NA	NA	NA	NA	NA
WP_002213310.1|3244396_3245071_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_002213314.1|3245212_3246574_+	stationary phase inducible protein CsiE	NA	NA	NA	NA	NA
WP_002213316.1|3246570_3247728_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
WP_002227864.1|3248079_3248628_-	attachment invasion locus protein Ail	NA	A0A1B0VBR9	Salmonella_phage	36.7	6.8e-25
WP_002223388.1|3248737_3248920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002211552.1|3249071_3250325_-	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	52.5	2.8e-98
WP_002211553.1|3250865_3252056_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_002211554.1|3253588_3253927_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
WP_002211555.1|3253941_3255564_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.5	1.1e-94
WP_002211556.1|3255723_3257061_-	two-component system response regulator GlrR	NA	W8CYM9	Bacillus_phage	37.4	1.2e-11
WP_072120864.1|3257023_3258046_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA	NA
WP_002216114.1|3258094_3259531_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	23.8	3.1e-13
WP_002213759.1|3259751_3260210_-|transposase	IS200/IS605-like element IS1541A family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002216113.1|3260199_3260424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002211559.1|3261436_3261997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211560.1|3262448_3262898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032487261.1|3263205_3263313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211561.1|3263309_3267200_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	59.5	8.8e-127
WP_002211562.1|3267515_3268976_+	membrane-bound lytic murein transglycosylase MltF	NA	I1VXB7	Halocynthia_phage	41.4	7.1e-13
WP_002211563.1|3269084_3269687_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	34.1	6.5e-05
WP_002211564.1|3269757_3270453_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
WP_002211565.1|3270679_3271567_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_002211566.1|3271774_3272614_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002211567.1|3272775_3273036_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.5	9.3e-17
WP_002213775.1|3273191_3273650_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002211568.1|3273851_3274232_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_002211569.1|3274231_3274963_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_001297096.1|3275152_3275932_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_000255944.1|3275931_3276954_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002211571.1|3277632_3278982_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_002211572.1|3278985_3279525_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_002211573.1|3279798_3280284_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_002211574.1|3280609_3282112_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_002211575.1|3282135_3282660_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_002211576.1|3282764_3283373_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_002211577.1|3283357_3284548_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_002209743.1|3284572_3285781_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
>prophage 17
NC_003143	Yersinia pestis CO92, complete genome	4653728	3947245	3999872	4653728	transposase,protease	Escherichia_phage(17.65%)	53	NA	NA
WP_002213775.1|3947245_3947704_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002210156.1|3947899_3948352_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_002210155.1|3948391_3948619_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_002210154.1|3948623_3948944_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_002210153.1|3948949_3949342_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_002210152.1|3949708_3950410_-	esterase	NA	NA	NA	NA	NA
WP_000255944.1|3950466_3951489_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_001297096.1|3951488_3952268_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_002210151.1|3953348_3954242_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002210150.1|3954503_3955208_+	pirin family protein	NA	NA	NA	NA	NA
WP_002210149.1|3956144_3957044_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	44.4	1.0e-49
WP_002228200.1|3957106_3959080_+	penicillin-binding protein activator	NA	NA	NA	NA	NA
WP_002210147.1|3959163_3959517_+	YraN family protein	NA	NA	NA	NA	NA
WP_002210146.1|3959787_3960378_+	DnaA initiator-associating protein DiaA	NA	A0A067XQR2	Caulobacter_phage	32.0	3.2e-12
WP_002210145.1|3960388_3960964_+	divisome-associated lipoprotein YraP	NA	NA	NA	NA	NA
WP_002210144.1|3961170_3961896_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_002210143.1|3961892_3962546_-	isoprenoid biosynthesis glyoxalase ElbB	NA	NA	NA	NA	NA
WP_002210142.1|3962787_3965124_-	aerobic respiration two-component sensor histidine kinase ArcB	NA	A0A1V0SGX0	Hokovirus	30.4	9.9e-41
WP_002210140.1|3965387_3966311_-	TIGR01212 family radical SAM protein	NA	NA	NA	NA	NA
WP_002229651.1|3967133_3971600_+	glutamate synthase large subunit	NA	NA	NA	NA	NA
WP_002210138.1|3971609_3973028_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002210137.1|3973468_3973954_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002216203.1|3974106_3974622_-|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	55.6	3.6e-28
WP_002210135.1|3974627_3975269_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_002230558.1|3975448_3975646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002210133.1|3975642_3976035_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_002210132.1|3976049_3976478_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_002210131.1|3976791_3977919_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_002210130.1|3978142_3978547_+	DUF1043 family protein	NA	NA	NA	NA	NA
WP_002218066.1|3978817_3980191_+|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	28.2	7.4e-20
WP_002213775.1|3980307_3980766_-|transposase	IS200/IS605-like element IS1541B family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002210128.1|3980991_3982080_+	outer membrane-stress sensor serine endopeptidase DegS	NA	A0A1B1IRD3	uncultured_Mediterranean_phage	31.8	2.1e-09
WP_002210127.1|3982260_3983523_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_002210126.1|3983676_3983931_-	BolA family iron metabolism protein IbaG	NA	NA	NA	NA	NA
WP_002210125.1|3984077_3984380_-	lipid asymmetry maintenance protein MlaB	NA	NA	NA	NA	NA
WP_002210124.1|3984415_3985039_-	phospholipid-binding protein MlaC	NA	NA	NA	NA	NA
WP_002210123.1|3985051_3985609_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
WP_002210122.1|3985613_3986396_-	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA	NA
WP_002210121.1|3986613_3987432_-	phospholipid ABC transporter ATP-binding protein MlaF	NA	G3M9Y6	Bacillus_virus	31.7	2.2e-19
WP_002210120.1|3987696_3988671_+	calcium/sodium antiporter	NA	NA	NA	NA	NA
WP_002210119.1|3988781_3989768_+	arabinose-5-phosphate isomerase KdsD	NA	A0A2P0VNK5	Tetraselmis_virus	30.8	6.0e-40
WP_002228203.1|3990016_3990580_+	3-deoxy-manno-octulosonate-8-phosphatase KdsC	NA	A0A140XBD6	Dickeya_phage	83.0	9.6e-59
WP_002218352.1|3990576_3991140_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_002210117.1|3991123_3991669_+	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA	NA
WP_002210116.1|3991675_3992401_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.4	1.4e-22
WP_002210115.1|3992462_3993896_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_002213952.1|3994324_3994807_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_002210113.1|3995112_3995967_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	30.0	3.2e-05
WP_002210112.1|3995963_3996236_+	PTS phosphocarrier protein NPr	NA	NA	NA	NA	NA
WP_002210111.1|3996573_3997509_+	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	38.5	1.5e-48
WP_002210110.1|3997520_3997985_+	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_002210109.1|3998122_3998509_+	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA	NA
WP_000255944.1|3998849_3999872_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
>prophage 18
NC_003143	Yersinia pestis CO92, complete genome	4653728	4064441	4139423	4653728	holin,protease,tRNA,plate,transposase	Morganella_phage(22.22%)	59	NA	NA
WP_002213759.1|4064441_4064900_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.0	1.5e-09
WP_002210052.1|4065082_4065295_-	RNA chaperone/antiterminator CspA	NA	A0A1W6JNX5	Morganella_phage	78.6	9.9e-25
WP_002210053.1|4065554_4065767_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	80.0	4.4e-25
WP_002210054.1|4066299_4066767_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_002210055.1|4067242_4068055_+	N-acyl homoserine lactonase family protein	NA	NA	NA	NA	NA
WP_002210056.1|4068119_4069010_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002217470.1|4069187_4069583_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_002210058.1|4069736_4071101_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	25.8	1.0e-13
WP_002210059.1|4071190_4071853_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002210060.1|4071918_4072395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002210061.1|4073148_4073445_-	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA	NA
WP_002210062.1|4073469_4074435_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_002220963.1|4075023_4075905_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
WP_002210065.1|4075980_4077435_-	sodium/panthothenate symporter	NA	NA	NA	NA	NA
WP_002210066.1|4077424_4077667_-	YhdT family protein	NA	NA	NA	NA	NA
WP_162828711.1|4078602_4078779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002210069.1|4079024_4080374_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_002210070.1|4080385_4080850_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_002210071.1|4081007_4081460_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_002210072.1|4081722_4082343_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_002210073.1|4082342_4083443_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_002210074.1|4083665_4084643_-	oxidoreductase	NA	NA	NA	NA	NA
WP_002210075.1|4085043_4086960_+	RNase E specificity factor CsrD	NA	NA	NA	NA	NA
WP_002228205.1|4087296_4088340_+	rod shape-determining protein MreB	NA	F2Y0P3	Organic_Lake_phycodnavirus	22.3	6.0e-06
WP_002210076.1|4088543_4089539_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_002210077.1|4089535_4090024_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_002210078.1|4090037_4090631_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_002210079.1|4090620_4092090_+	ribonuclease G	NA	NA	NA	NA	NA
WP_002210080.1|4092183_4096107_+	AsmA2 domain-containing protein YhdP	NA	NA	NA	NA	NA
WP_002210081.1|4096103_4096973_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_002210082.1|4096984_4098430_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
WP_002210083.1|4098632_4101491_-	RHS repeat protein	NA	NA	NA	NA	NA
WP_002210084.1|4101515_4104347_-	RHS repeat protein	NA	NA	NA	NA	NA
WP_002210086.1|4104547_4104907_-	DUF2570 domain-containing protein	NA	NA	NA	NA	NA
WP_002210087.1|4104903_4105305_-	M15 family metallopeptidase	NA	A0A249XWK9	Proteus_phage	61.0	3.6e-36
WP_002214300.1|4105317_4105620_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_002210089.1|4105753_4110244_-	toxin	NA	NA	NA	NA	NA
WP_002229661.1|4110300_4112442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002229660.1|4112510_4113893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210090.1|4113933_4116435_-	toxin	NA	NA	NA	NA	NA
WP_002214297.1|4116670_4117537_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002210092.1|4117797_4118709_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA	NA
WP_002210093.1|4119011_4119215_+	AaeX family protein	NA	NA	NA	NA	NA
WP_002210094.1|4119222_4120158_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA	NA
WP_002210095.1|4120159_4122115_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA	NA
WP_002214288.1|4124044_4124518_+	ribonuclease Ba	NA	NA	NA	NA	NA
WP_002210098.1|4124522_4124804_+	ribonuclease inhibitor	NA	NA	NA	NA	NA
WP_002210099.1|4124915_4125464_-	ribosome-associated protein	NA	NA	NA	NA	NA
WP_002210100.1|4125644_4126985_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_011055205.1|4127233_4127878_+	hypothetical protein	NA	A0A1B0VBK8	Salmonella_phage	49.0	3.4e-52
WP_002210102.1|4128085_4128472_+	cytochrome b562	NA	NA	NA	NA	NA
WP_002210103.1|4128695_4129106_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA	NA
WP_002210104.1|4129458_4131126_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_002215779.1|4131220_4132636_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_002210106.1|4133046_4134000_-	HTH-type transcriptional regulator TreR	NA	NA	NA	NA	NA
WP_002210107.1|4134233_4134710_-	PliI family lysozyme inhibitor of I-type lysozyme	NA	NA	NA	NA	NA
WP_001297096.1|4134825_4135605_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_000255944.1|4135604_4136627_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002212100.1|4138982_4139423_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
>prophage 1
NC_003131	Yersinia pestis CO92 plasmid pCD1, complete sequence	70305	12609	65166	70305	protease,transposase	Wolbachia_phage(33.33%)	55	NA	NA
WP_002213006.1|12609_13578_+|protease	T3SS effector cysteine protease YopT	protease	NA	NA	NA	NA
WP_002213004.1|13577_13976_+	type III secretion system chaperone SycT	NA	NA	NA	NA	NA
WP_002222515.1|14680_15100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_116442925.1|15848_16094_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_002229779.1|16335_17565_-	type III secretion system effector YopM	NA	NA	NA	NA	NA
WP_002229781.1|17958_18168_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002212987.1|19293_20214_-	type III secretion system translocon subunit YopD	NA	NA	NA	NA	NA
WP_002212985.1|20232_21438_-	type III secretion system translocon subunit YopB	NA	NA	NA	NA	NA
WP_002222758.1|21415_21922_-	type III secretion system chaperone SycD/LcrH	NA	NA	NA	NA	NA
WP_002212981.1|21934_22915_-	type III secretion system needle tip protein LcrV	NA	NA	NA	NA	NA
WP_002212973.1|22916_23204_-	type III secretion system chaperone LcrG	NA	NA	NA	NA	NA
WP_002220918.1|23245_23686_-	type III secretion system chaperone LcrR	NA	NA	NA	NA	NA
WP_002212971.1|23682_25797_-	SctV family type III secretion system export apparatus subunit LcrD	NA	NA	NA	NA	NA
WP_002229791.1|25783_26128_-	type III secretion system chaperone YscY	NA	NA	NA	NA	NA
WP_002212969.1|26124_26493_-	type III secretion system protein YscX	NA	NA	NA	NA	NA
WP_002229794.1|26489_26861_-	type III secretion chaperone SycN	NA	NA	NA	NA	NA
WP_002212965.1|26847_27126_-	type III secretion system gatekeeper subunit TyeA	NA	NA	NA	NA	NA
WP_002212958.1|27106_27988_-	SctW family type III secretion system gatekeeper subunit YopN	NA	NA	NA	NA	NA
WP_002212955.1|28185_29505_+	SctN family type III secretion system ATPase YscN	NA	NA	NA	NA	NA
WP_002212952.1|29501_29966_+	type III secretion system central stalk protein YscO	NA	NA	NA	NA	NA
WP_002212950.1|29965_31333_+	type III secretion system needle length determinant YscP	NA	NA	NA	NA	NA
WP_002212948.1|31329_32253_+	SctQ family type III secretion system cytoplasmic ring protein YscQ	NA	NA	NA	NA	NA
WP_002212947.1|32249_32903_+	SctR family type III secretion system export apparatus subunit YscR	NA	NA	NA	NA	NA
WP_002212945.1|32904_33171_+	SctS family type III secretion system export apparatus subunit YscS	NA	NA	NA	NA	NA
WP_002212938.1|33167_33953_+	SctT family type III secretion system export apparatus subunit YscT	NA	NA	NA	NA	NA
WP_002212936.1|33952_35017_+	type III secretion system export apparatus switch protein YscU	NA	NA	NA	NA	NA
WP_002222527.1|35592_35988_+	type III secretion system pilotin YscW	NA	NA	NA	NA	NA
WP_002212931.1|36111_36927_+	virulence regulon transcriptional activator VirF	NA	NA	NA	NA	NA
WP_002229797.1|37005_37104_+	type III secretion system protein YscA	NA	NA	NA	NA	NA
WP_002212925.1|37329_37743_+	type III secretion system chaperone YscB	NA	NA	NA	NA	NA
WP_002212923.1|37748_39572_+	SctC family type III secretion system outer membrane ring subunit YscC	NA	NA	NA	NA	NA
WP_002212919.1|39568_40828_+	SctD family type III secretion system inner membrane ring subunit YscD	NA	NA	NA	NA	NA
WP_002212917.1|40824_41025_+	type III secretion system co-chaperone YscE	NA	NA	NA	NA	NA
WP_002212916.1|41025_41289_+	type III secretion system needle filament protein YscF	NA	NA	NA	NA	NA
WP_002229801.1|41290_41638_+	type III secretion system chaperone YscG	NA	NA	NA	NA	NA
WP_002212915.1|41634_42132_+	T3SS polymerization control protein YopR	NA	NA	NA	NA	NA
WP_002212914.1|42132_42480_+	SctI family type III secretion system inner rod subunit LcrO	NA	NA	NA	NA	NA
WP_002212912.1|42486_43221_+	SctJ family type III secretion inner membrane ring lipoprotein YscJ	NA	NA	NA	NA	NA
WP_002361471.1|43220_43850_+	type III secretion system sorting platform protein YscK	NA	NA	NA	NA	NA
WP_010981371.1|43795_44461_+	SctL family type III secretion system stator protein YscL	NA	NA	NA	NA	NA
WP_002212907.1|44685_45033_+	type III secretion system exported negative regulator LcrQ/YscM1	NA	NA	NA	NA	NA
WP_002213278.1|47121_48528_-	T3SS effector protein-tyrosine-phosphatase YopH	NA	NA	NA	NA	NA
WP_002213287.1|50210_51077_-	type III secretion system effector acetyltransferase YopJ	NA	NA	NA	NA	NA
WP_002213290.1|51472_53671_-	type III secretion system effector protein kinase YopO/YpkA	NA	NA	NA	NA	NA
WP_002229809.1|53678_54128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002213291.1|54873_55113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002213292.1|56290_57169_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA	NA
WP_002233140.1|57149_57224_-	RepA leader peptide Tap	NA	NA	NA	NA	NA
WP_002229817.1|57465_57720_-	replication regulatory protein RepA	NA	NA	NA	NA	NA
WP_002233137.1|57857_58106_-	phospholipase	NA	A0A1B2LRT6	Wolbachia_phage	47.1	9.2e-06
WP_002213294.1|58522_58930_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	29.2	4.7e-07
WP_002213244.1|58953_59271_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_002213246.1|59442_59901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042469136.1|59969_60239_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_002213256.1|62850_65166_-|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	51.6	1.0e-279
>prophage 1
NC_003134	Yersinia pestis CO92 plasmid pMT1, complete sequence	96210	86	62789	96210	tail,transposase,terminase	Salmonella_phage(85.71%)	67	NA	NA
WP_000255944.1|86_1109_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_001297096.1|1108_1888_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_002211769.1|2021_2630_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	62.2	4.8e-64
WP_002211770.1|2931_5820_-|tail	phage tail protein	tail	J9Q6E3	Salmonella_phage	33.1	4.5e-11
WP_002211771.1|5900_6479_-	DUF4376 domain-containing protein	NA	Q9LA61	Enterobacterial_phage	38.8	3.4e-27
WP_002214118.1|6535_11167_-	DUF1983 domain-containing protein	NA	J9Q713	Salmonella_phage	88.6	0.0e+00
WP_002211773.1|11188_11776_-|tail	tail assembly protein	tail	J9Q7F8	Salmonella_phage	92.8	5.1e-103
WP_002211774.1|11763_12561_-	C40 family peptidase	NA	J9Q7R4	Salmonella_phage	96.2	1.4e-156
WP_002211775.1|12553_13252_-|tail	phage minor tail protein L	tail	J9Q7Y5	Salmonella_phage	99.1	7.1e-136
WP_000440566.1|13341_13677_-|tail	phage tail protein	tail	J9Q6E1	Salmonella_phage	97.3	5.7e-59
WP_002211776.1|13718_18296_-	tape measure protein	NA	J9Q712	Salmonella_phage	90.5	0.0e+00
WP_000952684.1|18303_18528_-	hypothetical protein	NA	J9Q7F7	Salmonella_phage	100.0	4.2e-34
WP_000163862.1|18653_18971_-	hypothetical protein	NA	J9Q7R3	Salmonella_phage	98.1	6.0e-50
WP_002211778.1|19030_19777_-	Ig domain-containing protein	NA	J9Q7Y4	Salmonella_phage	98.8	5.2e-129
WP_002211779.1|19851_20235_-	hypothetical protein	NA	J9Q6D8	Salmonella_phage	98.4	1.1e-66
WP_002211780.1|20236_20710_-	hypothetical protein	NA	J9Q711	Salmonella_phage	99.4	8.9e-82
WP_001027662.1|20700_21045_-	hypothetical protein	NA	J9Q7F6	Salmonella_phage	100.0	1.9e-57
WP_002211781.1|21142_21976_-	hypothetical protein	NA	J9Q7R2	Salmonella_phage	99.6	2.9e-152
WP_002211782.1|21975_22410_-	hypothetical protein	NA	J9Q7Y3	Salmonella_phage	99.3	3.1e-73
WP_002211783.1|22453_23116_-	Ig domain-containing protein	NA	J9Q6D6	Salmonella_phage	97.2	8.5e-107
WP_002211784.1|23190_24066_-	hypothetical protein	NA	J9Q710	Salmonella_phage	99.7	8.5e-163
WP_002211785.1|24092_24926_-	hypothetical protein	NA	J9Q7F4	Salmonella_phage	91.3	5.8e-137
WP_002211786.1|24948_26523_-	hypothetical protein	NA	J9Q7R1	Salmonella_phage	99.2	2.4e-301
WP_002211787.1|26556_27813_-|terminase	terminase	terminase	J9Q7Y2	Salmonella_phage	100.0	1.8e-251
WP_002211788.1|27815_28457_-	hypothetical protein	NA	J9Q6D4	Salmonella_phage	98.1	1.2e-108
WP_000176291.1|28652_28919_-	hypothetical protein	NA	J9Q757	Salmonella_phage	100.0	1.3e-42
WP_002211789.1|28928_29819_-	hypothetical protein	NA	J9Q7I6	Salmonella_phage	99.7	6.2e-169
WP_002211790.1|29824_30079_-	hypothetical protein	NA	J9Q7U0	Salmonella_phage	97.6	2.0e-40
WP_002211791.1|30071_30710_-	ATP-binding cassette domain-containing protein	NA	J9Q807	Salmonella_phage	98.1	4.7e-110
WP_002211792.1|30706_31375_-	ParB N-terminal domain-containing protein	NA	J9Q6L1	Salmonella_phage	98.2	9.5e-114
WP_002228791.1|31374_32073_-	ParB N-terminal domain-containing protein	NA	J9Q756	Salmonella_phage	98.7	9.6e-125
WP_002211794.1|32137_33697_+	DEAD/DEAH box helicase	NA	J9Q7I4	Salmonella_phage	99.0	1.1e-293
WP_002214131.1|33699_33978_+	hypothetical protein	NA	J9Q7T9	Salmonella_phage	97.8	4.4e-41
WP_002211796.1|34037_34460_+	hypothetical protein	NA	J9Q806	Salmonella_phage	85.0	4.1e-62
WP_002214134.1|34464_34992_+	transcriptional regulator	NA	J9Q6L0	Salmonella_phage	98.0	6.4e-81
WP_002211799.1|35313_35964_+	hypothetical protein	NA	J9Q754	Salmonella_phage	99.5	4.1e-114
WP_002214137.1|36048_36276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211801.1|36914_37397_-	hypothetical protein	NA	J9Q805	Salmonella_phage	94.4	5.1e-85
WP_002211802.1|37602_37884_-	hypothetical protein	NA	J9Q753	Salmonella_phage	93.5	6.1e-46
WP_002213759.1|38083_38542_-|transposase	IS200/IS605-like element IS1541A family transposase	transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	35.3	5.0e-13
WP_002214145.1|38750_39320_-	hypothetical protein	NA	J9Q7Z7	Salmonella_phage	100.0	5.8e-104
WP_002213303.1|39332_40079_-	hypothetical protein	NA	J9Q6J5	Salmonella_phage	96.4	4.1e-134
WP_002214148.1|40068_41985_-	AAA family ATPase	NA	J9Q741	Salmonella_phage	98.6	0.0e+00
WP_002213300.1|42214_43300_-	metallophosphoesterase	NA	J9Q7S9	Salmonella_phage	98.6	7.7e-206
WP_002213298.1|43715_44738_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002214160.1|45097_45742_-	hypothetical protein	NA	J9Q739	Salmonella_phage	98.1	1.8e-122
WP_002214164.1|46486_47551_+	replication protein RepA	NA	J9Q7H0	Salmonella_phage	98.6	2.4e-188
WP_002222711.1|48119_48332_-	hypothetical protein	NA	J9Q7S8	Salmonella_phage	95.7	6.8e-34
WP_002227818.1|48331_48667_-	hypothetical protein	NA	J9Q7Z5	Salmonella_phage	91.0	5.2e-52
WP_002228796.1|48663_48843_-	hypothetical protein	NA	J9Q6J1	Salmonella_phage	86.4	5.8e-18
WP_002228797.1|48883_49159_-	hypothetical protein	NA	J9Q738	Salmonella_phage	95.6	1.7e-45
WP_002222869.1|49226_49637_-	hypothetical protein	NA	J9Q7G9	Salmonella_phage	97.8	4.1e-75
WP_002222868.1|49620_49992_-	DUF2591 domain-containing protein	NA	J9Q7S7	Salmonella_phage	87.8	4.0e-61
WP_002222866.1|50145_50976_-	hypothetical protein	NA	J9Q7Z4	Salmonella_phage	98.6	9.3e-127
WP_002213439.1|50979_51180_-	hypothetical protein	NA	J9Q6J0	Salmonella_phage	97.0	1.1e-25
WP_000920226.1|52349_52616_-	hypothetical protein	NA	J9Q7G8	Salmonella_phage	100.0	1.6e-40
WP_002225551.1|52615_53560_-	exonuclease	NA	J9Q7S6	Salmonella_phage	99.0	1.3e-180
WP_002213132.1|53620_54649_-	hypothetical protein	NA	J9Q7Z3	Salmonella_phage	98.5	1.3e-165
WP_002213135.1|54768_55200_-	hypothetical protein	NA	J9Q6I8	Salmonella_phage	98.6	2.6e-72
WP_002215095.1|55420_55672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002213141.1|55744_56308_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	64.6	2.2e-63
WP_002425587.1|56337_56763_-	hypothetical protein	NA	J9Q7S4	Salmonella_phage	100.0	7.5e-72
WP_001297096.1|57332_58112_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	4.5e-139
WP_000255944.1|58111_59134_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_002211744.1|59257_61267_-	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	30.3	7.7e-26
WP_002211745.1|61339_61570_-	DUF905 domain-containing protein	NA	NA	NA	NA	NA
WP_002211746.1|62282_62789_-	antirestriction protein ArdA	NA	A0A1I9S7Y0	Rhodococcus_phage	29.5	1.1e-08
