assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000008925.1_ASM892v1	NC_007929	Lactobacillus salivarius UCC118, complete sequence	1	120840-122773	1,1,1,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR	no	cas9,cas1,cas2,csn2	cas9,cas1,cas2,csn2,DinG,csa3,DEDDh,cas3,cas14j	Type II-A,Type II-C,Type II-B	GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC,GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC,GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC,AGTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACCT,GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC	36,36,36,38,36	0	0	NA	NA	NA:NA:NA:NA:NA	28,27,21,21,21	28	TypeII-A,TypeII-C,TypeII-B	cas9,cas1,cas2,csn2,DinG,csa3,DEDDh,cas3,cas14j,Cas14u_CAS-V	NA|166aa|up_5|NC_007929.1_114068_114566_+,NA	NA|517aa|up_9|NC_007929.1_109120_110671_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|364aa|up_8|NC_007929.1_111091_112183_+	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|395aa|up_7|NC_007929.1_112190_113375_+	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains	NA|199aa|up_6|NC_007929.1_113376_113973_+	cd10033, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily	NA|166aa|up_5|NC_007929.1_114068_114566_+	NA	cas9|1150aa|up_4|NC_007929.1_114739_118189_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas9|191aa|up_3|NC_007929.1_118185_118758_+	pfam16595, Cas9_PI, PAM-interacting domain of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|NC_007929.1_118951_119857_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|NC_007929.1_119834_120140_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|NC_007929.1_120136_120808_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|107aa|down_0|NC_007929.1_122940_123261_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|202aa|down_1|NC_007929.1_123263_123869_+	COG4709, COG4709, Predicted membrane protein [Function unknown]	NA|322aa|down_2|NC_007929.1_123871_124837_+	pfam13349, DUF4097, Putative adhesin	NA|77aa|down_3|NC_007929.1_124855_125086_+	pfam04024, PspC, PspC domain	NA|104aa|down_4|NC_007929.1_125425_125737_+	pfam08951, EntA_Immun, Enterocin A Immunity	NA|505aa|down_5|NC_007929.1_126138_127653_+	PRK00047, glpK, glycerol kinase GlpK	NA|610aa|down_6|NC_007929.1_127665_129495_+	NF033461, glycerol3P_ox_1, type 1 glycerol-3-phosphate oxidase	NA|236aa|down_7|NC_007929.1_129530_130238_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|363aa|down_8|NC_007929.1_130356_131445_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|267aa|down_9|NC_007929.1_131460_132261_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
GCF_000008925.1_ASM892v1	NC_007929	Lactobacillus salivarius UCC118, complete sequence	2	971037-971115	2	CRISPRCasFinder	no		cas9,cas1,cas2,csn2,DinG,csa3,DEDDh,cas3,cas14j	Orphan	TTTCAGAAGAACTACTACTTTCATC	25	0	0	NA	NA	NA	1	1	Orphan	cas9,cas1,cas2,csn2,DinG,csa3,DEDDh,cas3,cas14j,Cas14u_CAS-V	NA|122aa|up_1|NC_007929.1_969504_969870_-,NA|215aa|up_0|NC_007929.1_970038_970683_-,NA|89aa|down_0|NC_007929.1_972085_972352_-,NA|78aa|down_7|NC_007929.1_978975_979209_-,NA|195aa|down_8|NC_007929.1_979568_980153_+	NA|773aa|up_9|NC_007929.1_961785_964104_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|291aa|up_8|NC_007929.1_964159_965032_-	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|289aa|up_7|NC_007929.1_965059_965926_-	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]	NA|154aa|up_6|NC_007929.1_965940_966402_-	pfam04284, DUF441, Protein of unknown function (DUF441)	NA|199aa|up_5|NC_007929.1_966528_967125_-	COG3601, COG3601, Predicted membrane protein [Function unknown]	NA|243aa|up_4|NC_007929.1_967427_968156_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|197aa|up_3|NC_007929.1_968155_968746_-	PRK00135, scpB, segregation and condensation protein B; Reviewed	NA|262aa|up_2|NC_007929.1_968735_969521_-	PRK00104, scpA, segregation and condensation protein A; Reviewed	NA|122aa|up_1|NC_007929.1_969504_969870_-	NA	NA|215aa|up_0|NC_007929.1_970038_970683_-	NA	NA|89aa|down_0|NC_007929.1_972085_972352_-	NA	NA|468aa|down_1|NC_007929.1_972458_973862_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|176aa|down_2|NC_007929.1_973880_974408_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|299aa|down_3|NC_007929.1_974434_975331_-	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC	NA|392aa|down_4|NC_007929.1_975522_976698_-	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]	NA|321aa|down_5|NC_007929.1_976971_977934_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|298aa|down_6|NC_007929.1_978048_978942_-	pfam14243, DUF4343, Domain of unknown function (DUF4343)	NA|78aa|down_7|NC_007929.1_978975_979209_-	NA	NA|195aa|down_8|NC_007929.1_979568_980153_+	NA	NA|95aa|down_9|NC_007929.1_980255_980540_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated
GCF_000008925.1_ASM892v1	NC_007929	Lactobacillus salivarius UCC118, complete sequence	3	1546992-1547212	3	CRISPRCasFinder	no		cas9,cas1,cas2,csn2,DinG,csa3,DEDDh,cas3,cas14j	Orphan	TTTGCTAATTGATTTACACCACTTGTTAATGCTGGAATTTGTGCATTCATTTG	53	0	0	NA	NA	NA	1	1	Orphan	cas9,cas1,cas2,csn2,DinG,csa3,DEDDh,cas3,cas14j,Cas14u_CAS-V	NA|296aa|up_7|NC_007929.1_1540359_1541247_-,NA|274aa|up_5|NC_007929.1_1541991_1542813_-,NA|80aa|up_1|NC_007929.1_1544969_1545209_-,NA|193aa|down_2|NC_007929.1_1551381_1551960_-,NA|194aa|down_3|NC_007929.1_1551973_1552555_-,NA|179aa|down_4|NC_007929.1_1552733_1553270_-	NA|216aa|up_9|NC_007929.1_1538692_1539340_-	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|297aa|up_8|NC_007929.1_1539466_1540357_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|296aa|up_7|NC_007929.1_1540359_1541247_-	NA	NA|209aa|up_6|NC_007929.1_1541320_1541947_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|274aa|up_5|NC_007929.1_1541991_1542813_-	NA	NA|274aa|up_4|NC_007929.1_1542865_1543687_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|114aa|up_3|NC_007929.1_1543759_1544101_-	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD)	NA|260aa|up_2|NC_007929.1_1544100_1544880_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|80aa|up_1|NC_007929.1_1544969_1545209_-	NA	NA|276aa|up_0|NC_007929.1_1545302_1546130_+	cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases	NA|264aa|down_0|NC_007929.1_1549121_1549913_-	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|273aa|down_1|NC_007929.1_1550106_1550925_-	pfam13248, zf-ribbon_3, zinc-ribbon domain	NA|193aa|down_2|NC_007929.1_1551381_1551960_-	NA	NA|194aa|down_3|NC_007929.1_1551973_1552555_-	NA	NA|179aa|down_4|NC_007929.1_1552733_1553270_-	NA	NA|158aa|down_5|NC_007929.1_1553244_1553718_-	PRK14559, PRK14559, serine/threonine phosphatase	NA|229aa|down_6|NC_007929.1_1553861_1554548_-	PRK14116, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|396aa|down_7|NC_007929.1_1554641_1555829_-	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|352aa|down_8|NC_007929.1_1555829_1556885_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|311aa|down_9|NC_007929.1_1556995_1557928_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter
GCF_000008925.1_ASM892v1	NC_006529	Lactobacillus salivarius UCC118 plasmid pSF118-20, complete sequence	1	4706-4807	1	CRISPRCasFinder	no			Orphan	GTCTATTTTTTAGACTTTCGCTCGTAGCAAGGGTTT	36	0	0	NA	NA	NA	1	1	Orphan	cas9,cas1,cas2,csn2,DinG,csa3,DEDDh,cas3,cas14j,Cas14u_CAS-V	NA|71aa|up_3|NC_006529.1_2398_2611_+,NA|93aa|up_2|NC_006529.1_2627_2906_+,NA|52aa|up_0|NC_006529.1_3831_3987_-,NA|84aa|down_0|NC_006529.1_5870_6122_-,NA|47aa|down_8|NC_006529.1_12476_12617_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|687aa|up_4|NC_006529.1_66_2127_-	pfam03389, MobA_MobL, MobA/MobL family	NA|71aa|up_3|NC_006529.1_2398_2611_+	NA	NA|93aa|up_2|NC_006529.1_2627_2906_+	NA	NA|250aa|up_1|NC_006529.1_3037_3787_-	COG3177, COG3177, Fic family protein [Function unknown]	NA|52aa|up_0|NC_006529.1_3831_3987_-	NA	NA|84aa|down_0|NC_006529.1_5870_6122_-	NA	NA|270aa|down_1|NC_006529.1_6125_6935_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|191aa|down_2|NC_006529.1_7010_7583_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|444aa|down_3|NC_006529.1_8111_9443_+	PRK07251, PRK07251, FAD-containing oxidoreductase	NA|187aa|down_4|NC_006529.1_10871_11432_+	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP	NA|62aa|down_5|NC_006529.1_11443_11629_+	COG5547, COG5547, Small integral membrane protein [Function unknown]	NA|181aa|down_6|NC_006529.1_11656_12199_+	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|84aa|down_7|NC_006529.1_12213_12465_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|47aa|down_8|NC_006529.1_12476_12617_+	NA	NA|72aa|down_9|NC_006529.1_12814_13030_+	pfam05532, CsbD, CsbD-like
